Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Forward (+)

20644782 .. 20647651

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G194800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGACTCTCAAGTCTACCAGCTCCATCAGAAGGAGTTCTATGTGTGCTTTTAGTAAACACAGCCCTGTCAATCTCCATTGTCAAAGGCATAATCCGATCAGTCCTGCATGTAGTTGGTATCCGTCTCTCATCATCATCATCCTCAACGTCGTCCTCAGCATCGTCACCCCCATCAACAGACTCCACTGAAATCGCCTCAGAATCATTTGAGTTCCATCTCAGTCCATCGGCTAGTTGCATCGAGGAGATCAGGAGCCGAATCCCAGCAATTCGGTTTGACACTGTGTGTAGTTTCAAGCAGCCAGAACATGAATGCCCAGTTTGCCTGTCTGAGTTTGAGCCCGAATCAGAGATAAACCACTTGTCTTGCGGCCATCTTTTCCACAAAACTTGCTTGGAAAAGTGGTTGAACTACTGGAACATTACATGCCCTCTTTGTAGGACTCCTTTAATGCCTGGGGAGGACACACCCTGCGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

162

Amino Acids

17.55

Weight (kDa)

5.28

Isoelectric Point (pI)

80.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	32, 480
AgsI	TTSAA	2 cut(s)	298, 412
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	301
Asp700I	GAANNNNTTC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	5 cut(s)	34, 181, 225, 235, 384
BciT130I	CCWGG	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	302, 373
BlsI	GCNGC	2 cut(s)	303, 374
Bme1390I	CCNGG	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	459
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	170, 249
BmuI	ACTGGG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 480
Bse1I	ACTGG	2 cut(s)	320, 422
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	32, 480
BseMII	CTCAG	4 cut(s)	171, 213, 235, 324
BseNI	ACTGG	2 cut(s)	320, 422
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	32, 480
BsmAI	GTCTC	1 cut(s)	131
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	98, 249
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	4 cut(s)	170, 212, 234, 325
BspLI	GGNNCC	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	320, 422
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	98, 249
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	157, 199, 221, 333
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	101, 252
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	98, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	2 cut(s)	113, 432
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	186, 282
CspCI	CAANNNNNGTGG	4 cut(s)	350, 374, 385, 409
CviAII	CATG	3 cut(s)	110, 311, 429
CviJI	RGCY	7 cut(s)	23, 65, 233, 258, 304, 343, 375
CviKI_1	RGCY	7 cut(s)	23, 65, 233, 258, 304, 343, 375
DdeI	CTNAG	4 cut(s)	157, 199, 221, 333
DpnI	GATC	2 cut(s)	100, 251
DpnII	GATC	2 cut(s)	98, 249
DraIII	CACNNNGTG	1 cut(s)	288
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	113, 314, 432
FaiI	YATR	5 cut(s)	43, 92, 111, 312, 430
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	109, 310, 428
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	302, 373
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	302, 373
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	302, 373
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	375
Hin1II	CATG	3 cut(s)	113, 314, 432
HinfI	GANTC	6 cut(s)	6, 182, 203, 261, 347, 445
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	2 cut(s)	17, 58
Hpy188I	TCNGA	5 cut(s)	31, 98, 202, 334, 352
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	2 cut(s)	17, 58
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	109, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	4 cut(s)	157, 199, 221, 333
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	113, 314, 432
Kzo9I	GATC	2 cut(s)	98, 249
LmnI	GCTCC	2 cut(s)	28, 255
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	170, 249
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	2 cut(s)	100, 251
MboI	GATC	2 cut(s)	98, 249
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	176, 439
MnlI	CCTC	6 cut(s)	154, 166, 208, 238, 444, 457
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	2 cut(s)	98, 249
NlaIII	CATG	3 cut(s)	113, 314, 432
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	165
NspI	RCATGY	2 cut(s)	113, 432
PctI	GAATGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	203, 261, 347
PkrI	GCNGC	2 cut(s)	303, 374
PleI	GAGTC	2 cut(s)	176, 439
PpsI	GAGTC	2 cut(s)	176, 439
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	2 cut(s)	302, 373
Sau3AI	GATC	2 cut(s)	98, 249
SchI	GAGTC	2 cut(s)	176, 439
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	2 cut(s)	25, 152
SfaNI	GCATC	2 cut(s)	170, 249
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	270
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	3 cut(s)	203, 261, 347
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	2 cut(s)	193, 289
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	193, 289
XceI	RCATGY	2 cut(s)	113, 432
XmiI	GTMKAC	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.