Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Forward (+)

57551429 .. 57554535

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0448500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCGCGGGGCCCACCTAAGAGGTCGTTGCTTATGCTTGGCGCATTGCCCCAAACAGCCAAACTATACCTCGAGATACTCGATCACAACATTGCCCCCAAACTATACCTCGACATAGCGCCTCCAAACCACGACTCGATCTCTCCGAATCACTCTGACTCACTCCATAGCTACCCGGCCCCGACTCACTCCACGGCCCTAAACCTTAAATCCACCGCCTCTAAAGGCCGGACTCTGGTGCGAATCTTTCGAAGCCCTAAGTCGGAGATTTGTCTTCGAATCTGGTTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCCGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGCCTGAAGAATTAGCAAAACAGTTCTGGTATTCGTTTGTTTTGTTCTCGGTGAAAACATTGATTGCTTCCAGCATTGTGGATTTCTTTAAGGAGCTTCCACAGTTTATTGTTAAGGCCGGGCCAATTTTAAGTACATCATGGAGGTTCTGGGACAGCTGCTGCTGGTTTGAAAGCTGCGGTAACGTAATTGCTTATGCTATTCTTTGCAATCTGACATTTTTGAATGAAAGCTGCGGGCCATCACATAGAGAGAATAATGGGGATGATGAGAGGATAGAGAACTTGGCCAGGAGGTCAAATGACCAATCTGAACAATGTTGTGGGAGTAATGAGATATGCTCTTATGAAGTTCTTTGGGATGGTGAATGTGATACTGATTCAAAATCGCTTCTCAATAAGTTTGCAAGAAAGGCGTCATTCAAACTTTCATGGTGGTGCAAAGGTGACCAGAGTGACCAGCACAAGCATGACATTGTCTCTTTTGAAAGAGGAAACATAATAACTGCAGAGCGCAGCAAAATGGTCAGGTATGGATCTTATCCTCTGTCACTTGTGGAATCAGATGCCACCCATTTGTTGTTGGACTTCAATGTTTGGAAGACTGCTTGGAAAAGAACTGCTAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

344

Amino Acids

38.86

Weight (kDa)

6.79

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	4 cut(s)	7, 216, 582, 639
AclWI	GGATC	1 cut(s)	946
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	818
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	2 cut(s)	235, 262
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	6 cut(s)	575, 628, 786, 826, 890, 994
AjnI	CCWGG	1 cut(s)	692
AluBI	AGCT	8 cut(s)	171, 338, 346, 389, 499, 561, 579, 636
AluI	AGCT	8 cut(s)	171, 338, 346, 389, 499, 561, 579, 636
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	1 cut(s)	946
AlwNI	CAGNNNCTG	1 cut(s)	564
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	8 cut(s)	10, 177, 195, 226, 519, 524, 641, 690
ApaI	GGGCCC	1 cut(s)	14
ApeKI	GCWGC	5 cut(s)	561, 564, 579, 636, 918
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	3 cut(s)	44, 121, 918
AspS9I	GGNCC	6 cut(s)	10, 11, 178, 196, 524, 641
AsuC2I	CCSGG	3 cut(s)	176, 326, 523
AsuHPI	GGTGA	3 cut(s)	466, 779, 860
AsuII	TTCGAA	2 cut(s)	250, 277
AvaI	CYCGRG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	14
BbsI	GAAGAC	2 cut(s)	266, 1010
BbvI	GCAGC	5 cut(s)	548, 551, 566, 623, 930
BccI	CCATC	2 cut(s)	652, 758
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	694
BcnI	CCSGG	3 cut(s)	176, 326, 523
BcoDI	GTCTC	1 cut(s)	886
BfmI	CTRYAG	1 cut(s)	909
BfoI	RGCGCY	1 cut(s)	122
BisI	GCNGC	5 cut(s)	562, 565, 580, 637, 919
BlsI	GCNGC	5 cut(s)	563, 566, 581, 638, 920
Bme1390I	CCNGG	4 cut(s)	176, 326, 523, 694
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	6 cut(s)	10, 11, 178, 196, 524, 641
BmiI	GGNNCC	3 cut(s)	11, 12, 180
BmrFI	CCNGG	4 cut(s)	176, 326, 523, 694
BmsI	GCATC	1 cut(s)	958
BpiI	GAAGAC	2 cut(s)	266, 1010
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
Bpu14I	TTCGAA	2 cut(s)	250, 277
BpuMI	CCSGG	3 cut(s)	176, 326, 523
BsaHI	GRCGYC	1 cut(s)	818
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 262
Bse3DI	GCAATG	2 cut(s)	44, 90
BseBI	CCWGG	1 cut(s)	694
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	673, 769
BseLI	CCNNNNNNNGG	2 cut(s)	235, 262
BseMI	GCAATG	2 cut(s)	44, 90
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	5 cut(s)	548, 551, 566, 623, 930
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	8 cut(s)	12, 179, 197, 228, 521, 526, 643, 692
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	4 cut(s)	176, 229, 326, 522
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	235, 262
BsmAI	GTCTC	1 cut(s)	886
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	8 cut(s)	12, 179, 197, 228, 521, 526, 643, 692
BsoBI	CYCGRG	1 cut(s)	71
Bsp119I	TTCGAA	2 cut(s)	250, 277
Bsp120I	GGGCCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	82, 138, 938
BspACI	CCGC	4 cut(s)	7, 216, 582, 639
BspANI	GGCC	8 cut(s)	12, 179, 197, 228, 521, 526, 643, 692
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	11, 12, 180
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	1 cut(s)	946
BspT104I	TTCGAA	2 cut(s)	250, 277
BsrDI	GCAATG	2 cut(s)	44, 90
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	82, 138, 938
BssNI	GRCGYC	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	694
Bst4CI	ACNGT	2 cut(s)	426, 507
BstACI	GRCGYC	1 cut(s)	818
BstBI	TTCGAA	2 cut(s)	250, 277
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	3 cut(s)	18, 258, 1026
BstDSI	CCRYGG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	848
BstF5I	GGATG	2 cut(s)	673, 769
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	3 cut(s)	44, 121, 918
BstKTI	GATC	3 cut(s)	85, 141, 941
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	3 cut(s)	82, 138, 938
BstMWI	GCNNNNNNNGC	1 cut(s)	815
BstNI	CCWGG	1 cut(s)	694
BstNSI	RCATGY	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	848
BstSCI	CCNGG	4 cut(s)	174, 324, 521, 692
BstSFI	CTRYAG	1 cut(s)	909
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	5 cut(s)	548, 551, 566, 623, 930
BstV2I	GAAGAC	2 cut(s)	266, 1010
BstX2I	RGATCY	1 cut(s)	938
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	938
BsuRI	GGCC	8 cut(s)	12, 179, 197, 228, 521, 526, 643, 692
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	673, 769
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	641
CaiI	CAGNNNCTG	1 cut(s)	564
CfoI	GCGC	3 cut(s)	44, 121, 918
Cfr13I	GGNCC	6 cut(s)	10, 11, 178, 196, 524, 641
CseI	GACGC	1 cut(s)	807
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	4 cut(s)	365, 543, 834, 872
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	18, 258, 1026
DpnI	GATC	3 cut(s)	84, 140, 940
DpnII	GATC	3 cut(s)	82, 138, 938
EaeI	YGGCCR	1 cut(s)	690
Eco24I	GRGCYC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	848
EcoRII	CCWGG	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	4 cut(s)	368, 546, 837, 875
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	4 cut(s)	364, 542, 833, 871
FauI	CCCGC	1 cut(s)	632
Fnu4HI	GCNGC	5 cut(s)	562, 565, 580, 637, 919
FokI	GGATG	2 cut(s)	680, 776
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	5 cut(s)	562, 565, 580, 637, 919
GlaI	GCGC	3 cut(s)	43, 120, 917
GluI	GCNGC	5 cut(s)	562, 565, 580, 637, 919
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	8 cut(s)	12, 179, 197, 228, 521, 526, 643, 692
HapII	CCGG	4 cut(s)	176, 229, 326, 522
HgaI	GACGC	1 cut(s)	807
HhaI	GCGC	3 cut(s)	44, 121, 918
Hin1I	GRCGYC	1 cut(s)	818
Hin1II	CATG	4 cut(s)	368, 546, 837, 875
Hin6I	GCGC	3 cut(s)	42, 119, 916
HinP1I	GCGC	3 cut(s)	42, 119, 916
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	9 cut(s)	134, 148, 158, 184, 232, 243, 279, 782, 962
HpaII	CCGG	4 cut(s)	176, 229, 326, 522
HphI	GGTGA	3 cut(s)	466, 779, 860
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	7 cut(s)	147, 157, 265, 395, 618, 715, 967
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	426, 507
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	4 cut(s)	612, 809, 843, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	815
HpyF3I	CTNAG	3 cut(s)	18, 258, 1026
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	818
Hsp92II	CATG	4 cut(s)	368, 546, 837, 875
HspAI	GCGC	3 cut(s)	42, 119, 916
Kzo9I	GATC	3 cut(s)	82, 138, 938
LmnI	GCTCC	1 cut(s)	496
Lsp1109I	GCAGC	5 cut(s)	548, 551, 566, 623, 930
LweI	GCATC	1 cut(s)	958
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	4 cut(s)	584, 848, 857, 951
MalI	GATC	3 cut(s)	84, 140, 940
MboI	GATC	3 cut(s)	82, 138, 938
MboII	GAAGA	4 cut(s)	266, 305, 422, 1015
MflI	RGATCY	1 cut(s)	938
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	4 cut(s)	379, 413, 528, 591
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	4 cut(s)	128, 152, 178, 226
MmeI	TCCRAC	3 cut(s)	243, 294, 966
Mox20I	TGGCCA	1 cut(s)	692
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	4 cut(s)	207, 492, 516, 533
MslI	CAYNNNNRTG	2 cut(s)	838, 870
Msp20I	TGGCCA	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	561
MspI	CCGG	4 cut(s)	176, 229, 326, 522
MspR9I	CCNGG	4 cut(s)	176, 326, 523, 694
MvaI	CCWGG	1 cut(s)	694
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	815
NciI	CCSGG	3 cut(s)	176, 326, 523
NdeII	GATC	3 cut(s)	82, 138, 938
NlaIII	CATG	4 cut(s)	368, 546, 837, 875
NlaIV	GGNNCC	3 cut(s)	11, 12, 180
NmuCI	GTSAC	3 cut(s)	848, 857, 951
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	2 cut(s)	250, 277
PaeR7I	CTCGAG	1 cut(s)	71
PciI	ACATGT	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 143
PfeI	GAWTC	5 cut(s)	148, 243, 279, 782, 962
PflFI	GACNNNGTC	1 cut(s)	878
PkrI	GCNGC	5 cut(s)	563, 566, 581, 638, 920
PleI	GAGTC	4 cut(s)	128, 152, 178, 226
PpsI	GAGTC	4 cut(s)	128, 152, 178, 226
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	692
PspEI	GGTNACC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	692
PspN4I	GGNNCC	3 cut(s)	11, 12, 180
PspOMI	GGGCCC	1 cut(s)	10
PspPI	GGNCC	6 cut(s)	10, 11, 178, 196, 524, 641
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	938
PsyI	GACNNNGTC	1 cut(s)	878
PvuII	CAGCTG	1 cut(s)	561
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	2 cut(s)	838, 870
SaqAI	TTAA	4 cut(s)	207, 492, 516, 533
SatI	GCNGC	5 cut(s)	562, 565, 580, 637, 919
Sau3AI	GATC	3 cut(s)	82, 138, 938
Sau96I	GGNCC	6 cut(s)	10, 11, 178, 196, 524, 641
SchI	GAGTC	4 cut(s)	128, 152, 178, 226
ScrFI	CCNGG	4 cut(s)	176, 326, 523, 694
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	958
SfcI	CTRYAG	1 cut(s)	909
Sfr274I	CTCGAG	1 cut(s)	71
SfuI	TTCGAA	2 cut(s)	250, 277
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	838, 870
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	379, 413, 528, 591
SsiI	CCGC	4 cut(s)	7, 216, 582, 639
StyD4I	CCNGG	4 cut(s)	174, 324, 521, 692
TaaI	ACNGT	2 cut(s)	426, 507
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	6 cut(s)	72, 81, 111, 137, 250, 277
TasI	AATT	4 cut(s)	379, 413, 528, 591
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	5 cut(s)	148, 243, 279, 782, 962
Tru1I	TTAA	4 cut(s)	207, 492, 516, 533
Tru9I	TTAA	4 cut(s)	207, 492, 516, 533
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	848, 857, 951
TseI	GCWGC	5 cut(s)	561, 564, 579, 636, 918
Tsp45I	GTSAC	3 cut(s)	848, 857, 951
TspDTI	ATGAA	3 cut(s)	645, 765, 822
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	307
Tth111I	GACNNNGTC	1 cut(s)	878
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.