Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Forward (+)

68595117 .. 68597008

Gene Structure 1892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTCTCTCAAGTCTCCCAGCTCCATCAGAAGGATTTATGTGTGTGATTTTGGTAAACACAGCTCTATCAGTTTCAATTATCAAAGGCCTAGTGAGATCAATCCTTCGAATAGTTGGAATTCGCCTGTCATCTTCTTCCTCGGCCTCACCATCTTCACCCCCATCAGAAGAATACATTGAAGACCCCACAGAATCATTTGAGCTCCACCTTTCTTCATCAGGCAGTTACGTTGAGGAGATCAGGAGCCGCATCCCTGCCATTCGGTTTGATAGTGTATGTAGCCTCAAGACGGAGCACGACTGCTCTGTTTGCCTGACTGAGTTCCAACCAGAATCCGAGATAAACCACTTGACTTGTGGCCATGTTTTCCATCAAGATTGCTTGGAGAAGTGGTTGAACTACTGGAACATTACATGCCCACTTTGTAGGACTCCTTTAATGCCTGTGGAGGAGACCTCCTGCTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

157

Amino Acids

17.47

Weight (kDa)

4.91

Isoelectric Point (pI)

82.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	93 - 144	9.6e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	101 - 144	1.6e-12	Ring finger domain
zf-RING_11	PF17123	101 - 129	1.7e-09	RING-like zinc finger
zf-RING_5	PF14634	101 - 145	4.5e-08	zinc-RING finger domain
zf-C3HC4	PF00097	102 - 143	2.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	102 - 141	2.9e-08	RING-type zinc-finger
zf-C3HC4_2	PF13923	102 - 143	7.4e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	32, 292, 468
AgsI	TTSAA	3 cut(s)	78, 182, 400
AluBI	AGCT	3 cut(s)	23, 65, 205
AluI	AGCT	3 cut(s)	23, 65, 205
Alw21I	GWGCWC	2 cut(s)	207, 300
Alw26I	GTCTC	3 cut(s)	11, 20, 449
AoxI	GGCC	3 cut(s)	88, 144, 361
ApoI	RAATTY	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	141, 150
AsuII	TTCGAA	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	207, 300
BccI	CCATC	4 cut(s)	34, 160, 172, 381
BcoDI	GTCTC	3 cut(s)	11, 20, 449
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	1 cut(s)	443
Bpu14I	TTCGAA	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	272
BsaI	GGTCTC	2 cut(s)	11, 449
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 292, 468
Bse1I	ACTGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	32, 292, 468
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	2 cut(s)	251, 467
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	3 cut(s)	90, 146, 363
BsiHKAI	GWGCWC	2 cut(s)	207, 300
BslI	CCNNNNNNNGG	3 cut(s)	32, 292, 468
BsmAI	GTCTC	3 cut(s)	11, 20, 449
BsnI	GGCC	3 cut(s)	90, 146, 363
Bso31I	GGTCTC	2 cut(s)	11, 449
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	207, 300
Bsp143I	GATC	2 cut(s)	98, 240
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	3 cut(s)	90, 146, 363
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	109
BspTNI	GGTCTC	2 cut(s)	11, 449
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	98, 240
BstBI	TTCGAA	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	101, 243
BstMAI	GTCTC	3 cut(s)	11, 20, 449
BstMBI	GATC	2 cut(s)	98, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	420
BstV2I	GAAGAC	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	90, 146, 363
BtsCI	GGATG	1 cut(s)	252
CspCI	CAANNNNNGTGG	2 cut(s)	338, 373
CviAII	CATG	2 cut(s)	365, 417
CviJI	RGCY	8 cut(s)	23, 65, 90, 146, 205, 249, 285, 363
CviKI_1	RGCY	8 cut(s)	23, 65, 90, 146, 205, 249, 285, 363
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	100, 242
DpnII	GATC	2 cut(s)	98, 240
EaeI	YGGCCR	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	2 cut(s)	11, 449
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	2 cut(s)	368, 420
FaiI	YATR	4 cut(s)	41, 280, 366, 418
FatI	CATG	2 cut(s)	364, 416
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	90, 146, 363
Hin1II	CATG	2 cut(s)	368, 420
HinfI	GANTC	3 cut(s)	194, 335, 433
HphI	GGTGA	2 cut(s)	141, 150
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	3 cut(s)	31, 169, 340
Hpy188III	TCNNGA	3 cut(s)	244, 289, 377
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	26, 116
HpyCH4IV	ACGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	368, 420
Kzo9I	GATC	2 cut(s)	98, 240
LmnI	GCTCC	4 cut(s)	28, 210, 246, 295
LpnPI	CCDG	9 cut(s)	33, 140, 207, 229, 270, 329, 345, 391, 459
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	100, 242
MboI	GATC	2 cut(s)	98, 240
MboII	GAAGA	6 cut(s)	126, 129, 147, 182, 194, 207
MhlI	GDGCHC	2 cut(s)	207, 300
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	2 cut(s)	78, 120
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	97, 352
MnlI	CCTC	6 cut(s)	151, 157, 229, 296, 445, 469
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	2 cut(s)	98, 240
NlaIII	CATG	2 cut(s)	368, 420
NlaIV	GGNNCC	1 cut(s)	248
NmeAIII	GCCGAG	1 cut(s)	122
NspI	RCATGY	1 cut(s)	420
NspV	TTCGAA	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	194, 335
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Psp124BI	GAGCTC	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	98, 240
SchI	GAGTC	1 cut(s)	427
SduI	GDGCHC	2 cut(s)	207, 300
SetI	ASST	6 cut(s)	25, 67, 207, 213, 234, 461
SfaNI	GCATC	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	10, 287
SmoI	CTYRAG	2 cut(s)	10, 287
Sse9I	AATT	2 cut(s)	78, 120
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	109
TasI	AATT	2 cut(s)	78, 120
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	194, 335
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	308
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.