Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Reverse (-)

10124268 .. 10126628

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1131400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTCTCTCTAGTCTACCAGCTCCATCAGAAGGTGTTCTATGTGTGCTTTTAGTAAACACTGCCTTATCAGTCTCCATCATCAAGGGGATAATCCGATCAGTCCTGCAATTAGTTGGTATCCGTCTCTCATCATCTTCCCCGCCGTTAGCAGACTCCTCTGAAAACCTCTCAGAATCATTTGAGTTTCATGTCAGTCCCTCGGCTAGTTACATTGAGGAGATCAGGAGCAGTATCCCAGCAATTCAGTTCGAATCTGTGTGTAGCTTCAAGCAGCGGGAGCACGAATGCTCAGTCTGCCTAACCGAGTTTGAACCTGAATCGAAGATCAACCACTTGTCCTGCGGCCATATTTTCCATCAAAATTGCTTAGAGAAGTGGTTGAATTACTGGAACATTACATGCCCTCTTTGTAGGACTCCTTTCATGCCCGAGGAGGACGCACCCTGCTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

153

Amino Acids

16.95

Weight (kDa)

5.01

Isoelectric Point (pI)

78.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	93 - 139	8.7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	96 - 139	1.1e-12	Ring finger domain
zf-RING_5	PF14634	96 - 140	5.1e-09	zinc-RING finger domain
zf-RING_11	PF17123	96 - 124	3.6e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	96 - 138	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	97 - 138	5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	97 - 136	3.3e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	3 cut(s)	143, 277, 345
AcoI	YGGCCR	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	32, 453
AgsI	TTSAA	3 cut(s)	271, 314, 385
AluBI	AGCT	2 cut(s)	23, 267
AluI	AGCT	2 cut(s)	23, 267
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	3 cut(s)	11, 79, 131
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
Asp700I	GAANNNNTTC	1 cut(s)	36
AsuII	TTCGAA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	34, 86, 366
BceAI	ACGGC	1 cut(s)	130
BciVI	GTATCC	2 cut(s)	131, 245
BcoDI	GTCTC	3 cut(s)	11, 79, 131
BfaI	CTAG	2 cut(s)	12, 207
BfuI	GTATCC	2 cut(s)	131, 245
BisI	GCNGC	2 cut(s)	275, 346
BlsI	GCNGC	2 cut(s)	276, 347
BmeT110I	CYCGRG	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	201, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 453
Bse1I	ACTGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	201, 432
BseLI	CCNNNNNNNGG	2 cut(s)	32, 453
BseMII	CTCAG	2 cut(s)	186, 306
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	3 cut(s)	148, 233, 449
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	32, 453
BsmAI	GTCTC	3 cut(s)	11, 79, 131
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	98, 222, 327
BspACI	CCGC	3 cut(s)	143, 277, 345
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	185, 305
BspT104I	TTCGAA	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	201, 432
BssMI	GATC	3 cut(s)	98, 222, 327
BstBI	TTCGAA	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	172, 292, 370
BstKTI	GATC	3 cut(s)	101, 225, 330
BstMAI	GTCTC	3 cut(s)	11, 79, 131
BstMBI	GATC	3 cut(s)	98, 222, 327
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 297
BstNSI	RCATGY	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	286
BsuI	GTATCC	2 cut(s)	131, 245
BsuRI	GGCC	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
CseI	GACGC	1 cut(s)	449
CviAII	CATG	3 cut(s)	191, 402, 427
CviJI	RGCY	4 cut(s)	23, 206, 267, 348
CviKI_1	RGCY	4 cut(s)	23, 206, 267, 348
DdeI	CTNAG	3 cut(s)	172, 292, 370
DpnI	GATC	3 cut(s)	100, 224, 329
DpnII	GATC	3 cut(s)	98, 222, 327
EaeI	YGGCCR	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	194, 405, 430
FaiI	YATR	5 cut(s)	43, 192, 351, 403, 428
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	190, 401, 426
FauI	CCCGC	2 cut(s)	150, 270
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	275, 346
Fsp4HI	GCNGC	2 cut(s)	275, 346
FspBI	CTAG	2 cut(s)	12, 207
GluI	GCNGC	2 cut(s)	275, 346
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	348
HgaI	GACGC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	194, 405, 430
HinfI	GANTC	5 cut(s)	155, 176, 254, 320, 418
Hpy166II	GTNNAC	2 cut(s)	17, 58
Hpy188I	TCNGA	4 cut(s)	31, 98, 163, 175
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	2 cut(s)	17, 58
HpyAV	CCTTC	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 297
HpyF3I	CTNAG	3 cut(s)	172, 292, 370
Hsp92II	CATG	3 cut(s)	194, 405, 430
Kzo9I	GATC	3 cut(s)	98, 222, 327
LmnI	GCTCC	3 cut(s)	28, 228, 280
LpnPI	CCDG	8 cut(s)	33, 119, 211, 252, 330, 355, 376, 439
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	12, 207
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	100, 224, 329
MboI	GATC	3 cut(s)	98, 222, 327
MboII	GAAGA	2 cut(s)	129, 337
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	4 cut(s)	110, 243, 364, 385
MlyI	GAGTC	2 cut(s)	149, 412
MnlI	CCTC	7 cut(s)	169, 179, 211, 211, 417, 427, 430
MroXI	GAANNNNTTC	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	280, 297
NdeII	GATC	3 cut(s)	98, 222, 327
NlaIII	CATG	3 cut(s)	194, 405, 430
NmeAIII	GCCGAG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	252
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	176, 254, 320
PkrI	GCNGC	2 cut(s)	276, 347
PleI	GAGTC	2 cut(s)	149, 412
PpsI	GAGTC	2 cut(s)	149, 412
PspFI	CCCAGC	1 cut(s)	238
SatI	GCNGC	2 cut(s)	275, 346
Sau3AI	GATC	3 cut(s)	98, 222, 327
SchI	GAGTC	2 cut(s)	149, 412
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	5 cut(s)	25, 37, 171, 269, 319
SfuI	TTCGAA	1 cut(s)	252
Sse9I	AATT	4 cut(s)	110, 243, 364, 385
SsiI	CCGC	3 cut(s)	143, 277, 345
SspMI	CTAG	2 cut(s)	12, 207
TaqI	TCGA	2 cut(s)	252, 323
TasI	AATT	4 cut(s)	110, 243, 364, 385
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	176, 254, 320
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	179, 415
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	67
XceI	RCATGY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	12, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.