Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Forward (+)

31947125 .. 31949004

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTCTCTCAAGTCTCCCAGCTCCATCAGAAGGATTTATGTGTGTGATTTTGGTAAACACAGCTCTTTCGGTTTCAATCATCAAGGGCCTAGTGAGATCCATCCTCCGAATAGTTGGAATACGCCTCTCATCTTCATCCTCAGCCTCACCGTCTTCACCCCCATCAGAGGAATACATTGAAGACCCCTCAGAAACATTCGAGCTCCATCTTTCTTCCTCAGGCAGTTACATTGAGGAGATCAGGAGCCGCATCCCAGCCGTTCGGTTTGATAGCGTGTGTAACCTCAAGACAGAGCACGACTGCTCTGTTTGCCTAAGTGAGTTCCAACCAGAATCCGAGATAAACCACTTGACTTGTGGCCATGTTTTCCATCAAGATTGCTTGGAGAAGTGGTTGAACTACTGGAACATTACATGCCCTCTTTGTAGGACTCCTTTAATGCCTGTGGAGGAGACCTCCTGCTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

4.91

Isoelectric Point (pI)

85.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	93 - 144	5.6e-09	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	99 - 147	9.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	101 - 144	1e-12	Ring finger domain
zf-RING_11	PF17123	101 - 129	1.1e-09	RING-like zinc finger
zf-RING_5	PF14634	101 - 145	4.1e-08	zinc-RING finger domain
zf-RING_UBOX	PF13445	102 - 141	1.8e-08	RING-type zinc-finger
zf-C3HC4	PF00097	102 - 143	2.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	102 - 143	5.5e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	361
AfiI	CCNNNNNNNGG	3 cut(s)	32, 169, 468
AgsI	TTSAA	3 cut(s)	78, 182, 400
AluBI	AGCT	3 cut(s)	23, 65, 205
AluI	AGCT	3 cut(s)	23, 65, 205
Alw21I	GWGCWC	2 cut(s)	207, 300
Alw26I	GTCTC	3 cut(s)	11, 20, 449
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	88, 361
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	141, 150
AxyI	CCTNAGG	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	147, 189
Bbv12I	GWGCWC	2 cut(s)	207, 300
BbvCI	CCTCAGC	1 cut(s)	142
BccI	CCATC	5 cut(s)	34, 110, 172, 216, 381
BceAI	ACGGC	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	11, 20, 449
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	2 cut(s)	147, 189
BplI	GAGNNNNNCTC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	272
BsaI	GGTCTC	2 cut(s)	11, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 169, 468
Bse1I	ACTGG	1 cut(s)	410
Bse21I	CCTNAGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	102, 137, 252
BseLI	CCNNNNNNNGG	3 cut(s)	32, 169, 468
BseMII	CTCAG	3 cut(s)	156, 204, 234
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	2 cut(s)	251, 467
BseYI	CCCAGC	2 cut(s)	19, 256
BshFI	GGCC	2 cut(s)	90, 363
BsiHKAI	GWGCWC	2 cut(s)	207, 300
BslI	CCNNNNNNNGG	3 cut(s)	32, 169, 468
BsmAI	GTCTC	3 cut(s)	11, 20, 449
BsnI	GGCC	2 cut(s)	90, 363
Bso31I	GGTCTC	2 cut(s)	11, 449
Bsp1286I	GDGCHC	2 cut(s)	207, 300
Bsp143I	GATC	2 cut(s)	98, 240
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	90, 363
BspCNI	CTCAG	3 cut(s)	155, 203, 233
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	93
BspTNI	GGTCTC	2 cut(s)	11, 449
BsrI	ACTGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	98, 240
Bst4CI	ACNGT	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	142, 190, 220, 317
BstF5I	GGATG	3 cut(s)	102, 137, 252
BstKTI	GATC	2 cut(s)	101, 243
BstMAI	GTCTC	3 cut(s)	11, 20, 449
BstMBI	GATC	2 cut(s)	98, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	420
BstV2I	GAAGAC	2 cut(s)	147, 189
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	90, 363
BtsCI	GGATG	3 cut(s)	102, 137, 252
Cfr13I	GGNCC	1 cut(s)	88
CspCI	CAANNNNNGTGG	2 cut(s)	338, 373
CviAII	CATG	2 cut(s)	365, 417
CviJI	RGCY	8 cut(s)	23, 65, 90, 146, 205, 249, 260, 363
CviKI_1	RGCY	8 cut(s)	23, 65, 90, 146, 205, 249, 260, 363
DdeI	CTNAG	4 cut(s)	142, 190, 220, 317
DpnI	GATC	2 cut(s)	100, 242
DpnII	GATC	2 cut(s)	98, 240
EaeI	YGGCCR	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	2 cut(s)	11, 449
Eco53kI	GAGCTC	1 cut(s)	205
Eco81I	CCTNAGG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	2 cut(s)	368, 420
FaiI	YATR	3 cut(s)	41, 366, 418
FatI	CATG	2 cut(s)	364, 416
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	3 cut(s)	89, 124, 239
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	250
GsaI	CCCAGC	2 cut(s)	23, 260
HaeIII	GGCC	2 cut(s)	90, 363
Hin1II	CATG	2 cut(s)	368, 420
HinfI	GANTC	2 cut(s)	335, 433
HphI	GGTGA	2 cut(s)	141, 150
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	5 cut(s)	31, 110, 169, 193, 340
Hpy188III	TCNNGA	3 cut(s)	244, 289, 377
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	4 cut(s)	142, 190, 220, 317
Hsp92II	CATG	2 cut(s)	368, 420
Kzo9I	GATC	2 cut(s)	98, 240
LmnI	GCTCC	3 cut(s)	28, 210, 246
LpnPI	CCDG	7 cut(s)	33, 207, 229, 270, 345, 391, 459
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	227, 281
MalI	GATC	2 cut(s)	100, 242
MboI	GATC	2 cut(s)	98, 240
MboII	GAAGA	4 cut(s)	126, 147, 194, 207
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	207, 300
MlsI	TGGCCA	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	97, 352
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	2 cut(s)	98, 240
NlaIII	CATG	2 cut(s)	368, 420
NlaIV	GGNNCC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Psp124BI	GAGCTC	1 cut(s)	207
PspFI	CCCAGC	2 cut(s)	19, 256
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	98, 240
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	427
SduI	GDGCHC	2 cut(s)	207, 300
SetI	ASST	5 cut(s)	25, 67, 207, 288, 461
SfaNI	GCATC	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	10, 287
SmoI	CTYRAG	2 cut(s)	10, 287
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	201
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	126
XceI	RCATGY	1 cut(s)	420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.