Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Forward (+)

69432546 .. 69435460

Gene Structure 2915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCGCTCGCGTTTTGGTGGGCAAAGGAGTCGGCGTTCGTGGCTGGGTTTTGGCGACTGTCTTGGGCTGCGGGTGGACTAGATCTCGGAGAACGTCTCGGGTCTTTCAGCGGTGGAGGAAGACTAGTGGATCGGAGAGGTCGTCGTGATCGCGGTGTGCTTATAGGGTCCGTGCGAGACTCTAAACCTCACTTTGTGTCTGTTGGCAAGAAGAAATATCTCCCAGCTCCATCAGAAGGATTTATGTGTGTGATTTTGGTTAACACAGCTCTATCGGTTTCAATTATCAAAGGCCTAGTGAGATCAGTCCTTCGAATAGTTGGAATTCGCCTGTCATCTTCTTCCTCGGCCTCACCATCTTCACCCCCATCAGAAGAATACATTGAAGACCCCACAGAATCATTTGAGCTCCACCTTTCTTCATCAGGCAGTTACGTTGAGGAGATCAGGAGCCACATCCCTGCCATTCGGTTTGATAGTGTGTGTAGCCTCAAGACGGAGCACGACTGCTCTGTTTGCCTGACCGAGTTCCAACCAGAATCCGAGATAAACCACTTGACTTGTGGCCATGTTTTCCATCAAGATTGCTTGGAGAAGTGGTTGAACTACTGGAACATTACATGCCCACTTTGTAGGACTCCTTTGATGCCTGTGGAGGAGACCTCCTGCTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

226

Amino Acids

25.05

Weight (kDa)

6.38

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	161 - 212	1.9e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	169 - 212	3e-12	Ring finger domain
zf-RING_11	PF17123	169 - 197	2.9e-09	RING-like zinc finger
zf-RING_5	PF14634	169 - 213	8.6e-08	zinc-RING finger domain
zf-C3HC4	PF00097	170 - 211	4.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	170 - 209	5.3e-08	RING-type zinc-finger
zf-C3HC4_2	PF13923	170 - 211	1.4e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	11, 153
AciI	CCGC	3 cut(s)	71, 111, 153
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	196
AfiI	CCNNNNNNNGG	3 cut(s)	236, 496, 672
AgsI	TTSAA	3 cut(s)	282, 386, 604
AhlI	ACTAGT	1 cut(s)	124
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	227, 269, 409
AluI	AGCT	3 cut(s)	227, 269, 409
Alw21I	GWGCWC	2 cut(s)	411, 504
Alw26I	GTCTC	3 cut(s)	101, 171, 653
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	292, 348, 565
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	345, 354
AsuII	TTCGAA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	411
BbsI	GAAGAC	2 cut(s)	127, 393
Bbv12I	GWGCWC	2 cut(s)	411, 504
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	4 cut(s)	238, 364, 376, 585
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BcoDI	GTCTC	3 cut(s)	101, 171, 653
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	3 cut(s)	80, 125, 296
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	169, 452
BmsI	GCATC	1 cut(s)	636
BpiI	GAAGAC	2 cut(s)	127, 393
BplI	GAGNNNNNCTC	3 cut(s)	81, 113, 647
Bpu14I	TTCGAA	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	345
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 127, 157, 584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 496, 672
Bse1I	ACTGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	3 cut(s)	236, 496, 672
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	2 cut(s)	455, 671
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	2 cut(s)	44, 223
Bsh1236I	CGCG	2 cut(s)	11, 153
BshFI	GGCC	3 cut(s)	294, 350, 567
BsiHKAI	GWGCWC	2 cut(s)	411, 504
BsiHKCI	CYCGRG	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	236, 496, 672
BsmAI	GTCTC	3 cut(s)	101, 171, 653
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	294, 350, 567
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	411, 504
Bsp143I	GATC	5 cut(s)	82, 130, 148, 302, 444
BspACI	CCGC	3 cut(s)	71, 111, 153
BspANI	GGCC	3 cut(s)	294, 350, 567
BspFNI	CGCG	2 cut(s)	11, 153
BspLI	GGNNCC	2 cut(s)	169, 452
BspPI	GGATC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	5 cut(s)	82, 130, 148, 302, 444
Bst4CI	ACNGT	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	2 cut(s)	11, 153
BstKTI	GATC	5 cut(s)	85, 133, 151, 305, 447
BstMAI	GTCTC	3 cut(s)	101, 171, 653
BstMBI	GATC	5 cut(s)	82, 130, 148, 302, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 516
BstNSI	RCATGY	1 cut(s)	624
BstUI	CGCG	2 cut(s)	11, 153
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	2 cut(s)	127, 393
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	294, 350, 567
BtsCI	GGATG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	542, 577
CviAII	CATG	2 cut(s)	569, 621
DpnI	GATC	5 cut(s)	84, 132, 150, 304, 446
DpnII	GATC	5 cut(s)	82, 130, 148, 302, 444
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	565
Ecl136II	GAGCTC	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	572, 624
FaiI	YATR	4 cut(s)	164, 245, 570, 622
FatI	CATG	2 cut(s)	568, 620
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	3 cut(s)	80, 125, 296
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	2 cut(s)	48, 227
HaeIII	GGCC	3 cut(s)	294, 350, 567
Hin1II	CATG	2 cut(s)	572, 624
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	5 cut(s)	29, 179, 398, 539, 637
HpaI	GTTAAC	1 cut(s)	262
HphI	GGTGA	2 cut(s)	345, 354
Hpy166II	GTNNAC	2 cut(s)	77, 262
Hpy188I	TCNGA	5 cut(s)	89, 135, 235, 373, 544
Hpy188III	TCNNGA	4 cut(s)	146, 448, 493, 581
Hpy8I	GTNNAC	2 cut(s)	77, 262
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	230, 320
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	2 cut(s)	94, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 516
HpySE526I	ACGT	2 cut(s)	94, 435
Hsp92II	CATG	2 cut(s)	572, 624
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	82, 130, 148, 302, 444
LmnI	GCTCC	4 cut(s)	232, 414, 450, 499
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	636
MaeI	CTAG	3 cut(s)	80, 125, 296
MaeII	ACGT	2 cut(s)	94, 435
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	5 cut(s)	84, 132, 150, 304, 446
MboI	GATC	5 cut(s)	82, 130, 148, 302, 444
MboII	GAAGA	8 cut(s)	132, 223, 330, 333, 351, 386, 398, 411
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	411, 504
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	2 cut(s)	282, 324
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	3 cut(s)	38, 173, 631
MmeI	TCCRAC	2 cut(s)	301, 556
MnlI	CCTC	9 cut(s)	110, 131, 198, 355, 361, 433, 500, 649, 673
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	111
MvnI	CGCG	2 cut(s)	11, 153
MwoI	GCNNNNNNNGC	2 cut(s)	41, 516
NdeII	GATC	5 cut(s)	82, 130, 148, 302, 444
NlaIII	CATG	2 cut(s)	572, 624
NlaIV	GGNNCC	2 cut(s)	169, 452
NmeAIII	GCCGAG	1 cut(s)	326
NspI	RCATGY	1 cut(s)	624
NspV	TTCGAA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	398, 539
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	3 cut(s)	37, 173, 631
PpsI	GAGTC	3 cut(s)	37, 173, 631
Psp124BI	GAGCTC	1 cut(s)	411
PspFI	CCCAGC	2 cut(s)	44, 223
PspN4I	GGNNCC	2 cut(s)	169, 452
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	5 cut(s)	82, 130, 148, 302, 444
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	3 cut(s)	38, 173, 631
SduI	GDGCHC	2 cut(s)	411, 504
SetI	ASST	9 cut(s)	97, 142, 190, 229, 271, 411, 417, 438, 665
SfaNI	GCATC	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	313
SinI	GGWCC	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	2 cut(s)	282, 324
SseBI	AGGCCT	1 cut(s)	294
SsiI	CCGC	3 cut(s)	71, 111, 153
SspMI	CTAG	3 cut(s)	80, 125, 296
SstI	GAGCTC	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	2 cut(s)	97, 438
TaqI	TCGA	1 cut(s)	313
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	2 cut(s)	282, 324
TfiI	GAWTC	2 cut(s)	398, 539
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	2 cut(s)	160, 512
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XspI	CTAG	3 cut(s)	80, 125, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.