Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013411

Physical Location & Seq

Genomic Coordinates Reverse (-)

3980316 .. 3980774

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTCTCTCTAGTCTACCAGCTCCATCGGAAGGTGTTCTATGTGTGCTTTTAGTAAACACTGCCTTATCAGTCTCCATTATCAAAGGGATAATCCGATCAGTCCTGCAATTAGTTGGTATCCATCTCTCATCATCTTCTCCGCCGTTAGCAGACTCCCCTGAAAACCGCGCAGAATCATTTGAGTTTCATGTCAGTCCCTCGGCTAGTTACATTGAGGAGATCAGGGGCAGTATCCCAGCAATTCGGTTCGAATCTGTGTGTAGCTTCAAGCAGCAGGAACACGAATGCTCAGTCTGCCTGACCGAGTTTGAACCTGAATCGAAGATCAACCACTTGTCCTGCGGCCATATTTTCCATCAAAATTGCTTAGAGAAGTGGTTGAATTACTGGAACGTTACATGCCCTCTTTGTAGGACTCCTTTCATGCCCGAGGAGGACGCACCCTGCTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006066 GO:0006082 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009739 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019752 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0032787 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043412 GO:0043436 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080167 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901615 GO:1901698 GO:1901700 GO:1902644 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

153

Amino Acids

16.92

Weight (kDa)

5.13

Isoelectric Point (pI)

74.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	92 - 139	1.3e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	96 - 139	1.1e-12	Ring finger domain
zf-RING_5	PF14634	96 - 140	4.7e-09	zinc-RING finger domain
zf-RING_11	PF17123	96 - 124	3.6e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	96 - 138	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	97 - 138	1.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	97 - 136	3.3e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04240 AT2G04240
fragaria_vesca	FvH4_6g40400
malus_domestica	MD09G1131400.v1.1 MD17G1105700.v1.1
prunus_persica	Prupe.3G194800_v2.0.a1
pyrus_communis	pycom09g05360 pycom17g10980
rosa_chinensis	RchiOBHm_Chr2g0155621
rosa_laevigata	RLG00000020849
rosa_multiflora	Rmu_sc0003971.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093610
rosa_rugosa	Rorug02G0448500
rosa_samantha	Rh2AG514700 Rh2BG525500 Rh2CG499600 Rh2DG534500
rosa_wichuraiana	Rw2G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	143, 169, 345
AclI	AACGTT	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	32, 453
AgsI	TTSAA	3 cut(s)	271, 314, 385
AluBI	AGCT	2 cut(s)	23, 267
AluI	AGCT	2 cut(s)	23, 267
Alw26I	GTCTC	2 cut(s)	11, 79
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	34, 132, 366
BceAI	ACGGC	1 cut(s)	130
BciVI	GTATCC	2 cut(s)	131, 245
BcoDI	GTCTC	2 cut(s)	11, 79
BfaI	CTAG	2 cut(s)	12, 207
BfuI	GTATCC	2 cut(s)	131, 245
BisI	GCNGC	2 cut(s)	275, 346
BlsI	GCNGC	2 cut(s)	276, 347
BmeT110I	CYCGRG	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	201, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 453
Bse1I	ACTGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	201, 432
BseLI	CCNNNNNNNGG	2 cut(s)	32, 453
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	2 cut(s)	233, 449
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	32, 453
BsmAI	GTCTC	2 cut(s)	11, 79
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	98, 222, 327
BspACI	CCGC	3 cut(s)	143, 169, 345
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	201, 432
BssMI	GATC	3 cut(s)	98, 222, 327
BstBI	TTCGAA	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	292, 370
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	101, 225, 330
BstMAI	GTCTC	2 cut(s)	11, 79
BstMBI	GATC	3 cut(s)	98, 222, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	405
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	286
BsuI	GTATCC	2 cut(s)	131, 245
BsuRI	GGCC	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
CfoI	GCGC	1 cut(s)	173
CseI	GACGC	1 cut(s)	449
CviAII	CATG	3 cut(s)	191, 402, 427
CviJI	RGCY	4 cut(s)	23, 206, 267, 348
CviKI_1	RGCY	4 cut(s)	23, 206, 267, 348
DdeI	CTNAG	2 cut(s)	292, 370
DpnI	GATC	3 cut(s)	100, 224, 329
DpnII	GATC	3 cut(s)	98, 222, 327
EaeI	YGGCCR	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	431
FaeI	CATG	3 cut(s)	194, 405, 430
FaiI	YATR	5 cut(s)	43, 192, 351, 403, 428
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	190, 401, 426
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	275, 346
Fsp4HI	GCNGC	2 cut(s)	275, 346
FspBI	CTAG	2 cut(s)	12, 207
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	275, 346
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	348
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	194, 405, 430
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	5 cut(s)	155, 176, 254, 320, 418
Hpy166II	GTNNAC	2 cut(s)	17, 58
Hpy188I	TCNGA	2 cut(s)	31, 98
Hpy8I	GTNNAC	2 cut(s)	17, 58
HpyAV	CCTTC	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	2 cut(s)	292, 370
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	3 cut(s)	194, 405, 430
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	98, 222, 327
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	12, 207
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	209, 397
MalI	GATC	3 cut(s)	100, 224, 329
MboI	GATC	3 cut(s)	98, 222, 327
MboII	GAAGA	2 cut(s)	129, 337
MluCI	AATT	4 cut(s)	110, 243, 364, 385
MlyI	GAGTC	2 cut(s)	149, 412
MnlI	CCTC	5 cut(s)	211, 211, 417, 427, 430
MroXI	GAANNNNTTC	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeII	GATC	3 cut(s)	98, 222, 327
NlaIII	CATG	3 cut(s)	194, 405, 430
NmeAIII	GCCGAG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	252
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	176, 254, 320
PkrI	GCNGC	2 cut(s)	276, 347
PleI	GAGTC	2 cut(s)	149, 412
PpsI	GAGTC	2 cut(s)	149, 412
Psp1406I	AACGTT	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	238
SatI	GCNGC	2 cut(s)	275, 346
Sau3AI	GATC	3 cut(s)	98, 222, 327
SchI	GAGTC	2 cut(s)	149, 412
SetI	ASST	5 cut(s)	25, 37, 269, 319, 399
SfuI	TTCGAA	1 cut(s)	252
Sse9I	AATT	4 cut(s)	110, 243, 364, 385
SsiI	CCGC	3 cut(s)	143, 169, 345
SspMI	CTAG	2 cut(s)	12, 207
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	252, 323
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	4 cut(s)	110, 243, 364, 385
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	176, 254, 320
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	179, 415
TspRI	CASTG	1 cut(s)	67
XceI	RCATGY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	12, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.