Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005700

Physical Location & Seq

Genomic Coordinates Reverse (-)

1519339 .. 1521123

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04360.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTTGGGAAGCATAAGCCTCATCTCCTGCAACTTCTCTCGCCTTCCACGTCTTCTTAAACCCTCCACTCGACCTCAAACCCTAACACAATCCTCAAGCCTCCTTCTTCTTCTTCAATCACGAGCTTCTTCTTCACCACATAGAATTGCCCTTTTCCCGAAATACGAGAAGAAAGTCACATTCTTCCATATCTGCAAAAGCTCTTCAAACAACCCAGAAGAACCAGAGAAGACTCAAATTCAAGATGAAGGAAGAGACTGGTCTAGCTCAATTTTGCTTTTTGCGCTTTGGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACACCCACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGATGGTTTTAGAATGAATCAGATCCTTGTTGGGTTATGGTACATCATGGGTTTGTGGCCTTTGGTTTATGCCATGCTCTTGCTTCCCACTGGTACAAGTAAAACACCGGCTTGGCCTTTCGTTGTGCTTTCCTTTTTCGGTGGTGTTTATGCTTTGTTACCTTATTTTGCACTGTGGAATCCTCCTTCTCCTCCTGTTTCAGAGACTGAGCTGAGACAATGGCCTTTGAATGTTCTGGAATCAAAAGTAACTGCTGGGGTCACTCTAGTTGCAGGACTGGGTATAATTCTTTATTCAGTTGTCGGTAATGCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTTATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACCACCCGAAAATGGTTTGATAAAGGCAGTTGGCTGTTACCGGTATCGGTGATTCCATTCTTGGGACCTTCTTTGTATCTACTCCTACGACCAGCAGTGTCAGAGACGATAGCTCCCAAAGATACTGCATCATCTGACCCAAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLDc_N

Protein Analysis

320

Amino Acids

36.13

Weight (kDa)

8.56

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04360 AT2G04360 AT2G04360 AT2G04360
fragaria_vesca	FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480
malus_domestica	MD09G1129600.v1.1
prunus_persica	Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1
pyrus_communis	pycom09g05260
rosa_chinensis	RchiOBHm_Chr2g0155731
rosa_laevigata	RLG00000020859
rosa_multiflora	Rmu_sc0002712.1_g000017 Rmu_sc0003417.1_g000002 Rmu_sc0011953.1_g000002
rosa_rugosa	Rorug02G0449600 Rorug02G0449700
rosa_samantha	Rh2AG515600 Rh2BG526600 Rh2CG500600 Rh2DG535600
rosa_wichuraiana	Rw2G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	3 cut(s)	237, 373, 740
AfaI	GTAC	5 cut(s)	305, 353, 428, 481, 725
AfiI	CCNNNNNNNGG	3 cut(s)	705, 825, 875
AgeI	ACCGGT	1 cut(s)	853
AgsI	TTSAA	8 cut(s)	116, 207, 242, 316, 361, 373, 379, 616
AjiI	CACGTC	1 cut(s)	50
AluBI	AGCT	6 cut(s)	125, 201, 267, 367, 598, 926
AluI	AGCT	6 cut(s)	125, 201, 267, 367, 598, 926
Alw26I	GTCTC	4 cut(s)	249, 584, 595, 911
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	3 cut(s)	443, 500, 608
ApoI	RAATTY	3 cut(s)	237, 373, 740
AsiGI	ACCGGT	1 cut(s)	853
AspLEI	GCGC	2 cut(s)	286, 298
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	4 cut(s)	126, 395, 713, 874
AvaII	GGWCC	1 cut(s)	878
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	44, 236
BccI	CCATC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	4 cut(s)	249, 584, 595, 911
BfaI	CTAG	2 cut(s)	264, 653
BmcAI	AGTACT	1 cut(s)	725
Bme18I	GGWCC	1 cut(s)	878
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	879
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	1 cut(s)	950
BmuI	ACTGGG	1 cut(s)	674
BpiI	GAAGAC	2 cut(s)	44, 236
BpuEI	CTTGAG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	853
BsaXI	ACNNNNNCTCC	2 cut(s)	910, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	705, 825, 875
Bse118I	RCCGGY	3 cut(s)	493, 698, 853
Bse1I	ACTGG	3 cut(s)	263, 481, 669
BseLI	CCNNNNNNNGG	3 cut(s)	705, 825, 875
BseMII	CTCAG	2 cut(s)	585, 590
BseNI	ACTGG	3 cut(s)	263, 481, 669
BseRI	GAGGAG	1 cut(s)	567
BseYI	CCCAGC	1 cut(s)	641
BshFI	GGCC	3 cut(s)	445, 502, 610
BshTI	ACCGGT	1 cut(s)	853
BsiSI	CCGG	3 cut(s)	494, 699, 854
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	3 cut(s)	705, 825, 875
BsmAI	GTCTC	4 cut(s)	249, 584, 595, 911
BsmBI	CGTCTC	1 cut(s)	911
BsmFI	GGGAC	1 cut(s)	891
BsnI	GGCC	3 cut(s)	445, 502, 610
Bsp143I	GATC	2 cut(s)	328, 408
BspANI	GGCC	3 cut(s)	445, 502, 610
BspCNI	CTCAG	2 cut(s)	586, 591
BspLI	GGNNCC	1 cut(s)	879
BspPI	GGATC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	208
BsrFI	RCCGGY	3 cut(s)	493, 698, 853
BsrI	ACTGG	3 cut(s)	263, 481, 669
BssAI	RCCGGY	3 cut(s)	493, 698, 853
BssMI	GATC	2 cut(s)	328, 408
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	2 cut(s)	208, 247
BstDEI	CTNAG	2 cut(s)	594, 599
BstHHI	GCGC	2 cut(s)	286, 298
BstKTI	GATC	2 cut(s)	331, 411
BstMAI	GTCTC	4 cut(s)	249, 584, 595, 911
BstMBI	GATC	2 cut(s)	328, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstV2I	GAAGAC	2 cut(s)	44, 236
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	445, 502, 610
BtrI	CACGTC	1 cut(s)	50
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	3 cut(s)	474, 557, 915
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	2 cut(s)	286, 298
Cfr10I	RCCGGY	3 cut(s)	493, 698, 853
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	5 cut(s)	304, 352, 427, 480, 724
CspAI	ACCGGT	1 cut(s)	853
CviAII	CATG	4 cut(s)	433, 460, 749, 811
CviQI	GTAC	5 cut(s)	304, 352, 427, 480, 724
DdeI	CTNAG	2 cut(s)	594, 599
DpnI	GATC	2 cut(s)	330, 410
DpnII	GATC	2 cut(s)	328, 408
Eam1104I	CTCTTC	2 cut(s)	208, 247
EarI	CTCTTC	2 cut(s)	208, 247
Eco47I	GGWCC	1 cut(s)	878
EcoO109I	RGGNCCY	1 cut(s)	878
Esp3I	CGTCTC	1 cut(s)	911
FaeI	CATG	4 cut(s)	436, 463, 752, 814
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	4 cut(s)	432, 459, 748, 810
FbaI	TGATCA	1 cut(s)	328
FspBI	CTAG	2 cut(s)	264, 653
GlaI	GCGC	2 cut(s)	285, 297
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	445, 502, 610
HapII	CCGG	3 cut(s)	494, 699, 854
HhaI	GCGC	2 cut(s)	286, 298
Hin1II	CATG	4 cut(s)	436, 463, 752, 814
Hin6I	GCGC	2 cut(s)	284, 296
HinP1I	GCGC	2 cut(s)	284, 296
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	5 cut(s)	232, 403, 565, 626, 865
HpaII	CCGG	3 cut(s)	494, 699, 854
HphI	GGTGA	4 cut(s)	126, 395, 713, 874
Hpy166II	GTNNAC	2 cut(s)	773, 802
Hpy188I	TCNGA	4 cut(s)	408, 589, 916, 949
Hpy188III	TCNNGA	7 cut(s)	120, 157, 242, 326, 623, 731, 761
Hpy8I	GTNNAC	2 cut(s)	773, 802
HpyAV	CCTTC	5 cut(s)	53, 113, 242, 582, 891
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	30, 195, 557, 659, 782, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	594, 599
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	436, 463, 752, 814
HspAI	GCGC	2 cut(s)	284, 296
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	328, 408
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	3 cut(s)	328, 793, 931
LweI	GCATC	1 cut(s)	950
MaeI	CTAG	2 cut(s)	264, 653
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	6 cut(s)	175, 543, 634, 646, 751, 849
MalI	GATC	2 cut(s)	330, 410
MboI	GATC	2 cut(s)	328, 408
MflI	RGATCY	1 cut(s)	408
MluCI	AATT	6 cut(s)	144, 237, 270, 373, 672, 740
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	29, 73, 84, 103, 110, 579, 588
MseI	TTAA	1 cut(s)	57
MspI	CCGG	3 cut(s)	494, 699, 854
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	2 cut(s)	328, 408
NlaIII	CATG	4 cut(s)	436, 463, 752, 814
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	2 cut(s)	175, 646
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfeI	GAWTC	4 cut(s)	403, 565, 626, 865
PinAI	ACCGGT	1 cut(s)	853
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	878
Psp5II	RGGWCCY	1 cut(s)	878
PspFI	CCCAGC	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	1 cut(s)	878
PspPPI	RGGWCCY	1 cut(s)	878
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	5 cut(s)	305, 353, 428, 481, 725
RsaNI	GTAC	5 cut(s)	304, 352, 427, 480, 724
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	328, 408
Sau96I	GGNCC	1 cut(s)	878
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	950
SinI	GGWCC	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	6 cut(s)	144, 237, 270, 373, 672, 740
SspMI	CTAG	2 cut(s)	264, 653
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	70, 730
TasI	AATT	6 cut(s)	144, 237, 270, 373, 672, 740
TatI	WGTACW	3 cut(s)	303, 351, 723
TfiI	GAWTC	4 cut(s)	403, 565, 626, 865
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	3 cut(s)	481, 564, 915
TseFI	GTSAC	2 cut(s)	175, 646
Tsp45I	GTSAC	2 cut(s)	175, 646
TspDTI	ATGAA	3 cut(s)	261, 416, 737
TspGWI	ACGGA	2 cut(s)	725, 780
TspRI	CASTG	3 cut(s)	481, 564, 915
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	3 cut(s)	237, 373, 740
XspI	CTAG	2 cut(s)	264, 653
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.