Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005700

Physical Location & Seq

Genomic Coordinates Reverse (-)

20684104 .. 20687348

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G195700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTTGGCTAATGCCAACCTCATCTGCTGCAACTTCTTCTCCACCTTCCCATCTCTTCCTCTCAAAAACCCAACTTTCAGAACTTCATTACAAACCCAAAACCTAAAGGCCAGAATTTCACATTCCAAAACAACCTCAAAAGTTTCAATCTTTTCTGGAACCCACAATGGTAAAACTTCAATCTTTACATTTCAAAAGGGTCCTCTTCAAATTTGTCAGAGTACCTTAAATAGTCAGAAACCAGAAGACCCAGTTCTGAACGAGAGTGCTTCCTTGGAAAGTGAACTTGGTAAGAGTGAAAATGGTGCTGATGGAGGGAGCTGGACAACCTCAGTTTTGCTCTTTGTGTTGTGGGGTGCACTGCTGTACTATGTGTTCAATCTTGCTCCAGACCAGACCCCGTCACAGGACATGTATTTCTTAAAGAAACTCTTGAATTTGAAGGGAGATGATGGTTTCAGAATGAATGAAGTTCTCGTGTCCGTCTGGTACATAATGGGTTTGTGGCCTTTGGTGTATAGCATGTTGCTGCTTCCAACAGGGAGAAGCTCAAAAAGCAAAGTTCCTGTCTGGCCTTTCTTGATACTTTCATTCTTTGGTGGGGCTTATGCTCTTCTTCCCTATTTTGTGCTTTGGAGACCACCACCACCTCCTGTTGATGAAAGTGAGCTGACAAAATGGCCTCTCAACTTTCTTGAATCTAAATTAACTGCTTGGATATCACTTGCTGCAGGATTGGGCATCGTTATCTATGCAGGTCTAGCCGATGGGGCTGACTGGAAGGAATATTATCAGTACTTCAATGGAAGTAAATTTATCCATGTGATGAGCCTTGATTTCACTCTGCTATCTGCATTTGCTCCATTCTGGGTCTATAACGATATGACGTCCCGGAAATGGTTTGACAAAGGTTTTTGGCTTCTCTTTGTGTCATTGGTGCCACTCATAGGCCCTGCTCTGTATCTTGTCTTACGGCCATCTCTATCAACAGAAGCTAATTCACCGAGCCCTACTGATCCGAAATTGCACCATGAAGAAGACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLDc_N

Protein Analysis

349

Amino Acids

39.04

Weight (kDa)

6.96

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04360 AT2G04360 AT2G04360 AT2G04360
fragaria_vesca	FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480
malus_domestica	MD09G1129600.v1.1
prunus_persica	Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1
pyrus_communis	pycom09g05260
rosa_chinensis	RchiOBHm_Chr2g0155731
rosa_laevigata	RLG00000020859
rosa_multiflora	Rmu_sc0002712.1_g000017 Rmu_sc0003417.1_g000002 Rmu_sc0011953.1_g000002
rosa_rugosa	Rorug02G0449600 Rorug02G0449700
rosa_samantha	Rh2AG515600 Rh2BG526600 Rh2CG500600 Rh2DG535600
rosa_wichuraiana	Rw2G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	890
Acc36I	ACCTGC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	937
AclWI	GGATC	1 cut(s)	1010
AcoI	YGGCCR	1 cut(s)	974
AcsI	RAATTY	4 cut(s)	114, 210, 436, 812
AcyI	GRCGYC	1 cut(s)	887
AfaI	GTAC	4 cut(s)	223, 368, 491, 797
AfiI	CCNNNNNNNGG	3 cut(s)	406, 897, 947
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	9 cut(s)	147, 180, 194, 209, 379, 436, 442, 698, 802
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	4 cut(s)	321, 549, 670, 995
AluI	AGCT	4 cut(s)	321, 549, 670, 995
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	631
Alw44I	GTGCAC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	1010
AoxI	GGCC	6 cut(s)	108, 506, 572, 680, 949, 974
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	3 cut(s)	27, 529, 728
ApoI	RAATTY	4 cut(s)	114, 210, 436, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	552, 584
AspS9I	GGNCC	2 cut(s)	200, 950
AsuC2I	CCSGG	1 cut(s)	892
AsuHPI	GGTGA	1 cut(s)	993
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	1010
BauI	CACGAG	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	3 cut(s)	14, 516, 715
BccI	CCATC	5 cut(s)	58, 305, 446, 761, 985
BceAI	ACGGC	1 cut(s)	989
BcnI	CCSGG	1 cut(s)	892
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	1 cut(s)	729
BfuAI	ACCTGC	1 cut(s)	746
BglI	GCCNNNNNGGC	1 cut(s)	770
BisI	GCNGC	3 cut(s)	28, 530, 729
BlsI	GCNGC	3 cut(s)	29, 531, 730
BmcAI	AGTACT	1 cut(s)	797
Bme1390I	CCNGG	1 cut(s)	892
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 950
BmiI	GGNNCC	3 cut(s)	160, 201, 939
BmrFI	CCNGG	1 cut(s)	892
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	750
BmuI	ACTGGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	892
BsaHI	GRCGYC	1 cut(s)	887
BsaI	GGTCTC	1 cut(s)	631
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	3 cut(s)	406, 897, 947
Bse1I	ACTGG	2 cut(s)	251, 782
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	406, 897, 947
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	251, 782
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	14, 516, 715
BshFI	GGCC	6 cut(s)	110, 508, 574, 682, 951, 976
BshNI	GGYRCC	1 cut(s)	937
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	892
BslFI	GGGAC	1 cut(s)	874
BslI	CCNNNNNNNGG	3 cut(s)	406, 897, 947
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	874
BsnI	GGCC	6 cut(s)	110, 508, 574, 682, 951, 976
Bso31I	GGTCTC	1 cut(s)	631
Bsp1286I	GDGCHC	2 cut(s)	361, 1010
Bsp143I	GATC	1 cut(s)	1015
BspANI	GGCC	6 cut(s)	110, 508, 574, 682, 951, 976
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	160, 201, 939
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	1010
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	631
BsrI	ACTGG	2 cut(s)	251, 782
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	1015
BssNI	GRCGYC	1 cut(s)	887
BssSI	CACGAG	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	476
Bst6I	CTCTTC	3 cut(s)	60, 210, 618
BstACI	GRCGYC	1 cut(s)	887
BstDEI	CTNAG	1 cut(s)	331
BstKTI	GATC	1 cut(s)	1018
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	3 cut(s)	555, 761, 770
BstNSI	RCATGY	2 cut(s)	415, 526
BstSCI	CCNGG	1 cut(s)	890
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	14, 516, 715
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	6 cut(s)	110, 508, 574, 682, 951, 976
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
BveI	ACCTGC	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	200, 950
Csp6I	GTAC	4 cut(s)	222, 367, 490, 796
CviAII	CATG	4 cut(s)	412, 523, 821, 1031
CviQI	GTAC	4 cut(s)	222, 367, 490, 796
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	1 cut(s)	1017
DpnII	GATC	1 cut(s)	1015
EaeI	YGGCCR	1 cut(s)	974
Eam1104I	CTCTTC	3 cut(s)	60, 210, 618
EarI	CTCTTC	3 cut(s)	60, 210, 618
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	1010
Eco31I	GGTCTC	1 cut(s)	631
Eco32I	GATATC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	200
EcoO109I	RGGNCCY	2 cut(s)	200, 950
EcoRV	GATATC	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	1010
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	415, 526, 824, 1034
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	874
FatI	CATG	4 cut(s)	411, 522, 820, 1030
Fnu4HI	GCNGC	3 cut(s)	28, 530, 729
FriOI	GRGCYC	1 cut(s)	1010
Fsp4HI	GCNGC	3 cut(s)	28, 530, 729
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	3 cut(s)	28, 530, 729
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	6 cut(s)	110, 508, 574, 682, 951, 976
HapII	CCGG	1 cut(s)	892
Hin1I	GRCGYC	1 cut(s)	887
Hin1II	CATG	4 cut(s)	415, 526, 824, 1034
HinfI	GANTC	1 cut(s)	698
HpaII	CCGG	1 cut(s)	892
HphI	GGTGA	1 cut(s)	993
Hpy166II	GTNNAC	2 cut(s)	284, 359
Hpy188I	TCNGA	6 cut(s)	80, 219, 237, 258, 461, 1020
Hpy188III	TCNNGA	5 cut(s)	156, 389, 433, 580, 695
Hpy8I	GTNNAC	2 cut(s)	284, 359
HpyAV	CCTTC	3 cut(s)	55, 436, 775
HpyCH4IV	ACGT	1 cut(s)	887
HpyCH4V	TGCA	6 cut(s)	30, 359, 731, 755, 854, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	555, 761, 770
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	1 cut(s)	887
Hsp92I	GRCGYC	1 cut(s)	887
Hsp92II	CATG	4 cut(s)	415, 526, 824, 1034
Kzo9I	GATC	1 cut(s)	1015
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	318, 391, 865
Lsp1109I	GCAGC	3 cut(s)	14, 516, 715
LweI	GCATC	1 cut(s)	750
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	1 cut(s)	887
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	1 cut(s)	1017
MboI	GATC	1 cut(s)	1015
MboII	GAAGA	7 cut(s)	28, 47, 197, 257, 605, 608, 1046
MhlI	GDGCHC	2 cut(s)	361, 1010
MluCI	AATT	7 cut(s)	114, 210, 436, 704, 812, 997, 1022
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	8 cut(s)	29, 69, 145, 213, 308, 340, 660, 693
MseI	TTAA	3 cut(s)	227, 422, 707
MspI	CCGG	1 cut(s)	892
MspR9I	CCNGG	1 cut(s)	892
MwoI	GCNNNNNNNGC	3 cut(s)	555, 761, 770
NciI	CCSGG	1 cut(s)	892
NdeII	GATC	1 cut(s)	1015
NlaIII	CATG	4 cut(s)	415, 526, 824, 1034
NlaIV	GGNNCC	3 cut(s)	160, 201, 939
NmuCI	GTSAC	1 cut(s)	402
NspI	RCATGY	2 cut(s)	415, 526
PciI	ACATGT	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	698
PflFI	GACNNNGTC	1 cut(s)	400
PfoI	TCCNGGA	1 cut(s)	890
PkrI	GCNGC	3 cut(s)	29, 531, 730
PpuMI	RGGWCCY	1 cut(s)	200
PscI	ACATGT	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	200
PspN4I	GGNNCC	3 cut(s)	160, 201, 939
PspPI	GGNCC	2 cut(s)	200, 950
PspPPI	RGGWCCY	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	359, 391
PstI	CTGCAG	1 cut(s)	733
PsyI	GACNNNGTC	1 cut(s)	400
RsaI	GTAC	4 cut(s)	223, 368, 491, 797
RsaNI	GTAC	4 cut(s)	222, 367, 490, 796
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	227, 422, 707
SatI	GCNGC	3 cut(s)	28, 530, 729
Sau3AI	GATC	1 cut(s)	1015
Sau96I	GGNCC	2 cut(s)	200, 950
ScaI	AGTACT	1 cut(s)	797
ScrFI	CCNGG	1 cut(s)	892
SduI	GDGCHC	2 cut(s)	361, 1010
SfaNI	GCATC	1 cut(s)	750
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	7 cut(s)	114, 210, 436, 704, 812, 997, 1022
SspI	AATATT	1 cut(s)	788
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	890
StyI	CCWWGG	1 cut(s)	273
TaiI	ACGT	1 cut(s)	890
TasI	AATT	7 cut(s)	114, 210, 436, 704, 812, 997, 1022
TatI	WGTACW	2 cut(s)	366, 795
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	3 cut(s)	227, 422, 707
Tru9I	TTAA	3 cut(s)	227, 422, 707
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	3 cut(s)	27, 529, 728
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	6 cut(s)	75, 479, 483, 579, 675, 1047
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	366
Tth111I	GACNNNGTC	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	4 cut(s)	114, 210, 436, 812
XceI	RCATGY	2 cut(s)	415, 526
XspI	CTAG	1 cut(s)	761
ZraI	GACGTC	1 cut(s)	888
ZrmI	AGTACT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.