Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005700

Physical Location & Seq

Genomic Coordinates Reverse (-)

73654524 .. 73657224

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG526600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTGTTGGCTAATGCCAACCTCATCTCCTGCAACTTCTCAACCTTCCCATCATCCCTTCCACCCAAAACCCAAAACTCCAAAACTTCACTCCAAACCCAAATCCTCAAGCCCAGAATTTCACACTCCAAAACAGCCTCAAAAGTTTCAACCTTTTTTGGACCCCACAATGGTAAAGCTTCAATCTTTACATTCCACAAGGGCCAGCTTCAAATTTGTCACAGTACCTTGAATAGCCAGAAACCAGAAGACCCGGTTCTGAATGAAGGTGAATACTTGAAGAGTGAAAATGGTGGTGATGAAAGGAACTGGACAACCTCAATTTTGCTATTTCTGTTGTGGGGGGCACTCATGTTCTATGTGTTCAATCTTTCTCCAAATCAGACCCCGTCAAGGGACATGTATTTCTTAAAGAAACTCTTGAATTTGAAGGGAGATGATGGTTTTAGAATGAATGGAGTGCTTGTATCTGTCTGGTACATAATGGGTTTGTGGCCTTTGGTGTATAGCATGCTGCTGCTTCCAACTGGGAGAAGCTCAAAAAGCAGCATTCCTGTCTGGCCTTTCTTAATACTTTCATGCTTTGGTGGAGCATATGCCCTTCTTCCATACTTTGTACTTTGGAAACCACCACCACCTACTGTTGATGAAAGTGAGCTCAGAAGATGGCCTCTCAACTTTCTAGAATCTAAATTAACTGCTGGGATTACACTTGCTGCAGGGCTGGGCATAGTCATTTATGCAGGTCTAGCAAGTGGTGCTGACTGGAAGGAATATTACCAGTACTTCAATGAAAGTAAATTTATCCATGTCATGAGCCTTGATTTCACTTTACTATCTGCATTTGCTCCATTTTGGGTTTACAACGATATGACTTCACGAAAATGGTTTGACAAAGGCTCTTGGCTTCTGCTTTTGTCACTGGTGCCGCTTCTAGGCCCTGCTTTGTACCTCGTCTTACGACCATCACTGTCAACTGAACCTATTTCACTGAGCCCTGCTGAGCCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLDc_N

Protein Analysis

337

Amino Acids

37.89

Weight (kDa)

8.95

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04360 AT2G04360 AT2G04360 AT2G04360
fragaria_vesca	FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480
malus_domestica	MD09G1129600.v1.1
prunus_persica	Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1
pyrus_communis	pycom09g05260
rosa_chinensis	RchiOBHm_Chr2g0155731
rosa_laevigata	RLG00000020859
rosa_multiflora	Rmu_sc0002712.1_g000017 Rmu_sc0003417.1_g000002 Rmu_sc0011953.1_g000002
rosa_rugosa	Rorug02G0449600 Rorug02G0449700
rosa_samantha	Rh2AG515600 Rh2BG526600 Rh2CG500600 Rh2DG535600
rosa_wichuraiana	Rw2G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	925
AciI	CCGC	1 cut(s)	929
AcsI	RAATTY	4 cut(s)	117, 213, 424, 800
AfaI	GTAC	5 cut(s)	226, 479, 618, 785, 950
AfiI	CCNNNNNNNGG	4 cut(s)	170, 393, 394, 935
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	9 cut(s)	150, 183, 212, 232, 280, 367, 424, 430, 790
AluBI	AGCT	4 cut(s)	179, 208, 537, 658
AluI	AGCT	4 cut(s)	179, 208, 537, 658
Alw21I	GWGCWC	1 cut(s)	660
AoxI	GGCC	5 cut(s)	202, 494, 560, 668, 937
ApeKI	GCWGC	4 cut(s)	514, 517, 546, 716
ApoI	RAATTY	4 cut(s)	117, 213, 424, 800
AspS9I	GGNCC	3 cut(s)	161, 202, 938
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	281, 308
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	925
BanII	GRGCYC	2 cut(s)	660, 998
BarI	GAAGNNNNNNTAC	2 cut(s)	761, 793
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	4 cut(s)	501, 504, 558, 703
BccI	CCATC	4 cut(s)	58, 434, 660, 973
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	3 cut(s)	683, 749, 935
BfmI	CTRYAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	734
BisI	GCNGC	5 cut(s)	515, 518, 547, 717, 929
BlpI	GCTNAGC	1 cut(s)	1002
BlsI	GCNGC	5 cut(s)	516, 519, 548, 718, 930
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	161, 202, 938
BmiI	GGNNCC	2 cut(s)	163, 927
BmrFI	CCNGG	1 cut(s)	254
BmrI	ACTGGG	1 cut(s)	537
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 450, 480
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 393, 394, 935
Bse1I	ACTGG	5 cut(s)	314, 532, 770, 781, 927
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	4 cut(s)	170, 393, 394, 935
BseMII	CTCAG	3 cut(s)	673, 983, 993
BseNI	ACTGG	5 cut(s)	314, 532, 770, 781, 927
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	4 cut(s)	501, 504, 558, 703
BseYI	CCCAGC	2 cut(s)	701, 724
BshFI	GGCC	5 cut(s)	204, 496, 562, 670, 939
BshNI	GGYRCC	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	4 cut(s)	170, 393, 394, 935
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	5 cut(s)	204, 496, 562, 670, 939
Bsp1286I	GDGCHC	3 cut(s)	349, 660, 998
Bsp1720I	GCTNAGC	1 cut(s)	1002
BspACI	CCGC	1 cut(s)	929
BspANI	GGCC	5 cut(s)	204, 496, 562, 670, 939
BspCNI	CTCAG	3 cut(s)	672, 984, 994
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	2 cut(s)	163, 927
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	734
BspT107I	GGYRCC	1 cut(s)	925
BsrI	ACTGG	5 cut(s)	314, 532, 770, 781, 927
Bst4CI	ACNGT	3 cut(s)	224, 643, 972
Bst6I	CTCTTC	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	206, 512
BstDEI	CTNAG	3 cut(s)	659, 992, 1002
BstF5I	GGATG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	3 cut(s)	543, 749, 758
BstNSI	RCATGY	2 cut(s)	403, 514
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	4 cut(s)	501, 504, 558, 703
BstV2I	GAAGAC	1 cut(s)	255
BsuRI	GGCC	5 cut(s)	204, 496, 562, 670, 939
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	920, 968, 989
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	2 cut(s)	206, 512
CciI	TCATGA	1 cut(s)	813
Cfr13I	GGNCC	3 cut(s)	161, 202, 938
Csp6I	GTAC	5 cut(s)	225, 478, 617, 784, 949
CviAII	CATG	6 cut(s)	352, 400, 511, 579, 809, 814
CviQI	GTAC	5 cut(s)	225, 478, 617, 784, 949
DdeI	CTNAG	3 cut(s)	659, 992, 1002
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	658
Eco24I	GRGCYC	2 cut(s)	660, 998
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	938
EcoT38I	GRGCYC	2 cut(s)	660, 998
FaeI	CATG	6 cut(s)	355, 403, 514, 582, 812, 817
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	6 cut(s)	351, 399, 510, 578, 808, 813
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	515, 518, 547, 717, 929
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	2 cut(s)	660, 998
Fsp4HI	GCNGC	5 cut(s)	515, 518, 547, 717, 929
FspBI	CTAG	3 cut(s)	683, 749, 935
GluI	GCNGC	5 cut(s)	515, 518, 547, 717, 929
GsaI	CCCAGC	2 cut(s)	705, 728
HaeIII	GGCC	5 cut(s)	204, 496, 562, 670, 939
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	6 cut(s)	355, 403, 514, 582, 812, 817
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	1 cut(s)	686
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	281, 308
Hpy166II	GTNNAC	2 cut(s)	862, 975
Hpy188I	TCNGA	3 cut(s)	261, 384, 662
Hpy188III	TCNNGA	4 cut(s)	421, 683, 814, 879
Hpy8I	GTNNAC	2 cut(s)	862, 975
HpyAV	CCTTC	6 cut(s)	55, 68, 260, 424, 611, 763
HpyCH4III	ACNGT	3 cut(s)	224, 643, 972
HpyCH4V	TGCA	4 cut(s)	33, 719, 743, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	543, 749, 758
HpyF3I	CTNAG	3 cut(s)	659, 992, 1002
Hsp92II	CATG	6 cut(s)	355, 403, 514, 582, 812, 817
LmnI	GCTCC	2 cut(s)	590, 853
Lsp1109I	GCAGC	4 cut(s)	501, 504, 558, 703
MaeI	CTAG	3 cut(s)	683, 749, 935
MaeIII	GTNAC	2 cut(s)	218, 918
MboII	GAAGA	4 cut(s)	260, 292, 596, 675
MhlI	GDGCHC	3 cut(s)	349, 660, 998
MluCI	AATT	6 cut(s)	117, 213, 321, 424, 692, 800
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	6 cut(s)	32, 116, 148, 328, 681, 962
MseI	TTAA	3 cut(s)	410, 569, 695
MslI	CAYNNNNRTG	1 cut(s)	883
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	543, 749, 758
NciI	CCSGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	595
NlaIII	CATG	6 cut(s)	355, 403, 514, 582, 812, 817
NlaIV	GGNNCC	2 cut(s)	163, 927
NmuCI	GTSAC	2 cut(s)	218, 918
NspI	RCATGY	2 cut(s)	403, 514
PaeI	GCATGC	1 cut(s)	514
PagI	TCATGA	1 cut(s)	813
PciI	ACATGT	1 cut(s)	399
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	686
PflFI	GACNNNGTC	1 cut(s)	388
PkrI	GCNGC	5 cut(s)	516, 519, 548, 718, 930
PscI	ACATGT	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	660
PspFI	CCCAGC	2 cut(s)	701, 724
PspN4I	GGNNCC	2 cut(s)	163, 927
PspPI	GGNCC	3 cut(s)	161, 202, 938
PstI	CTGCAG	1 cut(s)	721
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	5 cut(s)	226, 479, 618, 785, 950
RsaNI	GTAC	5 cut(s)	225, 478, 617, 784, 949
RseI	CAYNNNNRTG	1 cut(s)	883
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	410, 569, 695
SatI	GCNGC	5 cut(s)	515, 518, 547, 717, 929
Sau96I	GGNCC	3 cut(s)	161, 202, 938
ScaI	AGTACT	1 cut(s)	785
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	3 cut(s)	349, 660, 998
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	883
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	6 cut(s)	117, 213, 321, 424, 692, 800
SsiI	CCGC	1 cut(s)	929
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	3 cut(s)	683, 749, 935
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	224, 643, 972
TasI	AATT	6 cut(s)	117, 213, 321, 424, 692, 800
TatI	WGTACW	2 cut(s)	616, 783
TauI	GCSGC	1 cut(s)	931
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	3 cut(s)	410, 569, 695
Tru9I	TTAA	3 cut(s)	410, 569, 695
TscAI	CASTG	3 cut(s)	927, 975, 996
TseFI	GTSAC	2 cut(s)	218, 918
TseI	GCWGC	4 cut(s)	514, 517, 546, 716
Tsp45I	GTSAC	2 cut(s)	218, 918
TspDTI	ATGAA	6 cut(s)	279, 315, 467, 567, 663, 807
TspRI	CASTG	3 cut(s)	927, 975, 996
Tth111I	GACNNNGTC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	4 cut(s)	117, 213, 424, 800
XbaI	TCTAGA	1 cut(s)	682
XceI	RCATGY	2 cut(s)	403, 514
XspI	CTAG	3 cut(s)	683, 749, 935
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.