Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005700

Physical Location & Seq

Genomic Coordinates Reverse (-)

31992347 .. 31995227

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTGTTGGCTAATGCCAACCTCATCTCCTGCAACTTCTCAACCTTCCCATCATCCCTTCCATCCAAAACTTCACTCCAAACCCAAAACCTCAAGCCCAGAATTCCTCACTCCAAAACAGCCTCAAAAGTTTCAACCTTTTCTAAACCCAATAGTAAAGCTTCAATCTTTACATTCCACAAGGGCCACCTTCAAATTTGTCACAGTACCTTGAATAGCCAGAAACCAGACGACCCAGTTCTGAATGAAGGTGAACCATTAGAGGTTGAAAATGGTGGTGATGAAAAGAACTGGACAACCTCAATTCTGCTATTTTTGTTGTGGGGGGCACTCATGTTCTACGTGTTCACTCTTTCTCCAAATCAGACCCCGTCAAGGGACATGTATTTCATAAAGAAACTCTTGAATTTGAAGGGAGATGATGGTTTTAAAATGAACCAAGTGCTTGTGTCTGTCTGGTACATCATGGGTTTGTGGCCTTTGCTATATAGCATGCTGCTGCTTCCAACAGGGAGAAGCTCAAAAAGCAGCATTCCTGTCTGGCCCTTCTTAATACTTTCATGCTTTGGTGGAGCATATGCCCTTCTTCCCTATTTTGTACTTTGGAAACCACCACCACCTACTGTTGATGAAAGTGAGCTTGGAAGATGGCCTCTCAACTTCCTAGAATCTAAATTAACTGCTGGGATTGCACTTGCTGCAGGGCTGGGAATAGTCATTTATGCAGGTCTAGCGAGTGGGGCTGACTGGAATGAATATTACCAGTACTTCAATGAAAGTAAATTTATCCATGTCATGAGCCTTGATTTCACCCTACTATCTGCATTTGCTCCATTTTGGGTTTACAATGATATGACTTCACGAAAACGGTTTGACAAAGGCTCTTGGCTTCTGCCTTTGTCAGTGGTGCCATTTCTAGGCCCTGCTTTGTACCTCATCTTACGACCATCACTCTCAACGAAACCTAACTCACTGAGCCCTGCTGAGCCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLDc_N

Protein Analysis

332

Amino Acids

37.03

Weight (kDa)

8.79

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04360 AT2G04360 AT2G04360 AT2G04360
fragaria_vesca	FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480
malus_domestica	MD09G1129600.v1.1
prunus_persica	Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1
pyrus_communis	pycom09g05260
rosa_chinensis	RchiOBHm_Chr2g0155731
rosa_laevigata	RLG00000020859
rosa_multiflora	Rmu_sc0002712.1_g000017 Rmu_sc0003417.1_g000002 Rmu_sc0011953.1_g000002
rosa_rugosa	Rorug02G0449600 Rorug02G0449700
rosa_samantha	Rh2AG515600 Rh2BG526600 Rh2CG500600 Rh2DG535600
rosa_wichuraiana	Rw2G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	907
AcsI	RAATTY	4 cut(s)	102, 195, 406, 782
AfaI	GTAC	5 cut(s)	208, 461, 600, 767, 932
AfiI	CCNNNNNNNGG	3 cut(s)	375, 376, 917
AflIII	ACRYGT	2 cut(s)	342, 381
AgsI	TTSAA	8 cut(s)	135, 165, 194, 214, 269, 406, 412, 772
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	3 cut(s)	161, 519, 640
AluI	AGCT	3 cut(s)	161, 519, 640
AoxI	GGCC	5 cut(s)	184, 476, 542, 650, 919
ApeKI	GCWGC	4 cut(s)	496, 499, 528, 698
ApoI	RAATTY	4 cut(s)	102, 195, 406, 782
AspS9I	GGNCC	3 cut(s)	184, 543, 920
AsuHPI	GGTGA	3 cut(s)	263, 290, 802
BaeGI	GKGCMC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	907
BanII	GRGCYC	1 cut(s)	980
BbvI	GCAGC	4 cut(s)	483, 486, 540, 685
BccI	CCATC	5 cut(s)	58, 70, 416, 642, 955
BfaI	CTAG	3 cut(s)	665, 731, 917
BfmI	CTRYAG	1 cut(s)	699
BfuAI	ACCTGC	1 cut(s)	716
BisI	GCNGC	4 cut(s)	497, 500, 529, 699
BlpI	GCTNAGC	1 cut(s)	984
BlsI	GCNGC	4 cut(s)	498, 501, 530, 700
BmcAI	AGTACT	1 cut(s)	767
BmgT120I	GGNCC	3 cut(s)	184, 543, 920
BmiI	GGNNCC	1 cut(s)	909
BmrI	ACTGGG	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 340, 370
Bsc4I	CCNNNNNNNGG	3 cut(s)	375, 376, 917
Bse1I	ACTGG	4 cut(s)	236, 296, 752, 763
BseGI	GGATG	2 cut(s)	53, 62
BseLI	CCNNNNNNNGG	3 cut(s)	375, 376, 917
BseMII	CTCAG	2 cut(s)	965, 975
BseNI	ACTGG	4 cut(s)	236, 296, 752, 763
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	4 cut(s)	483, 486, 540, 685
BseYI	CCCAGC	2 cut(s)	683, 706
BshFI	GGCC	5 cut(s)	186, 478, 544, 652, 921
BshNI	GGYRCC	1 cut(s)	907
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	375, 376, 917
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	5 cut(s)	186, 478, 544, 652, 921
Bsp1286I	GDGCHC	2 cut(s)	331, 980
Bsp1720I	GCTNAGC	1 cut(s)	984
BspANI	GGCC	5 cut(s)	186, 478, 544, 652, 921
BspCNI	CTCAG	2 cut(s)	966, 976
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	909
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	1 cut(s)	716
BspT107I	GGYRCC	1 cut(s)	907
BsrI	ACTGG	4 cut(s)	236, 296, 752, 763
Bst4CI	ACNGT	3 cut(s)	206, 625, 870
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	974, 984
BstF5I	GGATG	2 cut(s)	53, 62
BstMWI	GCNNNNNNNGC	5 cut(s)	525, 689, 698, 731, 740
BstNSI	RCATGY	2 cut(s)	385, 496
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	4 cut(s)	483, 486, 540, 685
BsuRI	GGCC	5 cut(s)	186, 478, 544, 652, 921
BtsCI	GGATG	2 cut(s)	53, 62
BtsIMutI	CAGTG	2 cut(s)	909, 971
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	1 cut(s)	795
Cfr13I	GGNCC	3 cut(s)	184, 543, 920
Csp6I	GTAC	5 cut(s)	207, 460, 599, 766, 931
CviAII	CATG	7 cut(s)	334, 382, 466, 493, 561, 791, 796
CviQI	GTAC	5 cut(s)	207, 460, 599, 766, 931
DdeI	CTNAG	2 cut(s)	974, 984
DraI	TTTAAA	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	980
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	980
FaeI	CATG	7 cut(s)	337, 385, 469, 496, 564, 794, 799
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	7 cut(s)	333, 381, 465, 492, 560, 790, 795
FauNDI	CATATG	1 cut(s)	577
Fnu4HI	GCNGC	4 cut(s)	497, 500, 529, 699
FokI	GGATG	2 cut(s)	40, 49
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	4 cut(s)	497, 500, 529, 699
FspBI	CTAG	3 cut(s)	665, 731, 917
GluI	GCNGC	4 cut(s)	497, 500, 529, 699
GsaI	CCCAGC	2 cut(s)	687, 710
HaeIII	GGCC	5 cut(s)	186, 478, 544, 652, 921
Hin1II	CATG	7 cut(s)	337, 385, 469, 496, 564, 794, 799
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	1 cut(s)	668
HphI	GGTGA	3 cut(s)	263, 290, 802
Hpy166II	GTNNAC	3 cut(s)	254, 348, 844
Hpy188I	TCNGA	2 cut(s)	243, 366
Hpy188III	TCNNGA	3 cut(s)	403, 796, 861
Hpy8I	GTNNAC	3 cut(s)	254, 348, 844
HpyAV	CCTTC	7 cut(s)	55, 68, 200, 242, 406, 556, 593
HpyCH4III	ACNGT	3 cut(s)	206, 625, 870
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	5 cut(s)	33, 692, 701, 725, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	525, 689, 698, 731, 740
HpyF3I	CTNAG	2 cut(s)	974, 984
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	7 cut(s)	337, 385, 469, 496, 564, 794, 799
LmnI	GCTCC	2 cut(s)	572, 835
Lsp1109I	GCAGC	4 cut(s)	483, 486, 540, 685
MaeI	CTAG	3 cut(s)	665, 731, 917
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	2 cut(s)	578, 657
MhlI	GDGCHC	2 cut(s)	331, 980
MluCI	AATT	6 cut(s)	102, 195, 303, 406, 674, 782
MmeI	TCCRAC	1 cut(s)	530
MnlI	CCTC	8 cut(s)	32, 101, 117, 133, 256, 310, 663, 944
MseI	TTAA	3 cut(s)	429, 551, 677
Mva1269I	GAATGC	1 cut(s)	531
MwoI	GCNNNNNNNGC	5 cut(s)	525, 689, 698, 731, 740
NdeI	CATATG	1 cut(s)	577
NlaIII	CATG	7 cut(s)	337, 385, 469, 496, 564, 794, 799
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	2 cut(s)	385, 496
PaeI	GCATGC	1 cut(s)	496
PagI	TCATGA	1 cut(s)	795
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	668
PflFI	GACNNNGTC	1 cut(s)	370
PkrI	GCNGC	4 cut(s)	498, 501, 530, 700
Ppu21I	YACGTR	1 cut(s)	343
PscI	ACATGT	1 cut(s)	381
PspFI	CCCAGC	2 cut(s)	683, 706
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	3 cut(s)	184, 543, 920
PstI	CTGCAG	1 cut(s)	703
PsyI	GACNNNGTC	1 cut(s)	370
RsaI	GTAC	5 cut(s)	208, 461, 600, 767, 932
RsaNI	GTAC	5 cut(s)	207, 460, 599, 766, 931
SaqAI	TTAA	3 cut(s)	429, 551, 677
SatI	GCNGC	4 cut(s)	497, 500, 529, 699
Sau96I	GGNCC	3 cut(s)	184, 543, 920
ScaI	AGTACT	1 cut(s)	767
SduI	GDGCHC	2 cut(s)	331, 980
SfcI	CTRYAG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	6 cut(s)	102, 195, 303, 406, 674, 782
SspI	AATATT	1 cut(s)	758
SspMI	CTAG	3 cut(s)	665, 731, 917
TaaI	ACNGT	3 cut(s)	206, 625, 870
TaiI	ACGT	1 cut(s)	345
TasI	AATT	6 cut(s)	102, 195, 303, 406, 674, 782
TatI	WGTACW	2 cut(s)	598, 765
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	3 cut(s)	429, 551, 677
Tru9I	TTAA	3 cut(s)	429, 551, 677
TscAI	CASTG	2 cut(s)	909, 978
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	4 cut(s)	496, 499, 528, 698
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	8 cut(s)	261, 297, 379, 449, 549, 645, 768, 789
TspRI	CASTG	2 cut(s)	909, 978
Tth111I	GACNNNGTC	1 cut(s)	370
XapI	RAATTY	4 cut(s)	102, 195, 406, 782
XceI	RCATGY	2 cut(s)	385, 496
XspI	CTAG	3 cut(s)	665, 731, 917
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.