Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005700

Physical Location & Seq

Genomic Coordinates Reverse (-)

67266575 .. 67269576

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG500600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTGTTGGCTAATGCCAACCTCATCTCCTGCAACTTCTCAACCTTCCCATCATCCCTTCCACCCAAAACCCAAAACTCCAAAACTTCACTCCAAACCCAAATCCTCAAGCCCAGAATTTCACACTCCAAAACAGCCTCAAAAGTTTCAACCATTTTTGGACCCCACAATGGTAAAGCTTCTATCTTTACATTCCACAATGGCCAGCTTCAAATTTGTCACAGTACCTTGAATAGCCAGAAACCAGAAGACCCAGTTCTGAATGAAGGTGAATCCTTGAAGAGTGAAAATGGTGGTGATGAAAGGAACTGGACAACCTCAATTTTGCTATTTCTGTTGTGGGGGGCACTCATGTTCTATGTGTTCAATCTTTCTCCAAATCAGACCCCGTCAAGGGACATGTATTTCTTAAAGAAACTCTTGAATTTGAAGGGAGATGATGGTTTTAGAATGAATGAAGTGCTTGTGTCTGTCTGGTACATAATGGGTTTGTGGCCTTTGGTGTATAGCATGCTGCTGCTTCCAACAGGGAGAAGCTCAAAAAGCAGCATTCCTGTCTGGCCTTTCTTAATACTTTCATGCTTCGGTGGAGCATATGCCCTTCTTCCATACTTTGTACTTTGGAAACCACCACCACCTACTGTTGATGAAAGTGAGCTCAGAAGATGGCCTCTCAACTTTCTAGAATCTAAATTAACTGCTGGGGGCTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLDc_N

Protein Analysis

238

Amino Acids

26.73

Weight (kDa)

9.26

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04360 AT2G04360 AT2G04360 AT2G04360
fragaria_vesca	FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480
malus_domestica	MD09G1129600.v1.1
prunus_persica	Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1
pyrus_communis	pycom09g05260
rosa_chinensis	RchiOBHm_Chr2g0155731
rosa_laevigata	RLG00000020859
rosa_multiflora	Rmu_sc0002712.1_g000017 Rmu_sc0003417.1_g000002 Rmu_sc0011953.1_g000002
rosa_rugosa	Rorug02G0449600 Rorug02G0449700
rosa_samantha	Rh2AG515600 Rh2BG526600 Rh2CG500600 Rh2DG535600
rosa_wichuraiana	Rw2G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	3 cut(s)	117, 213, 424
AfaI	GTAC	3 cut(s)	226, 479, 618
AfiI	CCNNNNNNNGG	3 cut(s)	170, 393, 394
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	7 cut(s)	150, 212, 232, 280, 367, 424, 430
AluBI	AGCT	4 cut(s)	179, 208, 537, 658
AluI	AGCT	4 cut(s)	179, 208, 537, 658
Alw21I	GWGCWC	1 cut(s)	660
AoxI	GGCC	4 cut(s)	202, 494, 560, 668
ApeKI	GCWGC	3 cut(s)	514, 517, 546
ApoI	RAATTY	3 cut(s)	117, 213, 424
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	281, 308
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	501, 504, 558
BccI	CCATC	3 cut(s)	58, 434, 660
BfaI	CTAG	1 cut(s)	683
BisI	GCNGC	3 cut(s)	515, 518, 547
BlsI	GCNGC	3 cut(s)	516, 519, 548
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 393, 394
Bse1I	ACTGG	2 cut(s)	254, 314
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	170, 393, 394
BseMII	CTCAG	1 cut(s)	673
BseNI	ACTGG	2 cut(s)	254, 314
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	501, 504, 558
BseYI	CCCAGC	2 cut(s)	701, 708
BshFI	GGCC	4 cut(s)	204, 496, 562, 670
BsiHKAI	GWGCWC	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	170, 393, 394
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	4 cut(s)	204, 496, 562, 670
Bsp1286I	GDGCHC	2 cut(s)	349, 660
BspANI	GGCC	4 cut(s)	204, 496, 562, 670
BspCNI	CTCAG	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	254, 314
Bst4CI	ACNGT	2 cut(s)	224, 643
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	206, 512
BstDEI	CTNAG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	403, 514
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	501, 504, 558
BstV2I	GAAGAC	1 cut(s)	255
BsuRI	GGCC	4 cut(s)	204, 496, 562, 670
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	206, 512
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	225, 478, 617
CviAII	CATG	4 cut(s)	352, 400, 511, 579
CviQI	GTAC	3 cut(s)	225, 478, 617
DdeI	CTNAG	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	660
FaeI	CATG	4 cut(s)	355, 403, 514, 582
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	351, 399, 510, 578
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	515, 518, 547
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	515, 518, 547
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	3 cut(s)	515, 518, 547
GsaI	CCCAGC	2 cut(s)	705, 712
HaeIII	GGCC	4 cut(s)	204, 496, 562, 670
Hin1II	CATG	4 cut(s)	355, 403, 514, 582
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	2 cut(s)	272, 686
HphI	GGTGA	2 cut(s)	281, 308
Hpy188I	TCNGA	3 cut(s)	261, 384, 662
Hpy188III	TCNNGA	2 cut(s)	421, 683
HpyAV	CCTTC	5 cut(s)	55, 68, 260, 424, 611
HpyCH4III	ACNGT	2 cut(s)	224, 643
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpyF3I	CTNAG	1 cut(s)	659
Hsp92II	CATG	4 cut(s)	355, 403, 514, 582
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	3 cut(s)	501, 504, 558
MaeI	CTAG	1 cut(s)	683
MaeIII	GTNAC	1 cut(s)	218
MboII	GAAGA	4 cut(s)	260, 292, 596, 675
MhlI	GDGCHC	2 cut(s)	349, 660
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	5 cut(s)	117, 213, 321, 424, 692
MluNI	TGGCCA	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	5 cut(s)	32, 116, 148, 328, 681
Mox20I	TGGCCA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	3 cut(s)	410, 569, 695
Msp20I	TGGCCA	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	543
NdeI	CATATG	1 cut(s)	595
NlaIII	CATG	4 cut(s)	355, 403, 514, 582
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	403, 514
PaeI	GCATGC	1 cut(s)	514
PciI	ACATGT	1 cut(s)	399
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	272, 686
PflFI	GACNNNGTC	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	516, 519, 548
PscI	ACATGT	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	660
PspFI	CCCAGC	2 cut(s)	701, 708
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	161
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	3 cut(s)	226, 479, 618
RsaNI	GTAC	3 cut(s)	225, 478, 617
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	410, 569, 695
SatI	GCNGC	3 cut(s)	515, 518, 547
Sau96I	GGNCC	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	349, 660
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	5 cut(s)	117, 213, 321, 424, 692
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	224, 643
TasI	AATT	5 cut(s)	117, 213, 321, 424, 692
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	272, 686
Tru1I	TTAA	3 cut(s)	410, 569, 695
Tru9I	TTAA	3 cut(s)	410, 569, 695
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	514, 517, 546
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	6 cut(s)	279, 315, 467, 471, 567, 663
Tth111I	GACNNNGTC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	3 cut(s)	117, 213, 424
XbaI	TCTAGA	1 cut(s)	682
XceI	RCATGY	2 cut(s)	403, 514
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.