Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005700

Physical Location & Seq

Genomic Coordinates Forward (+)

3917490 .. 3920777

Gene Structure 3288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05260.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTATATGAGTGTCATTTTAATCTCATTGTCGCTTCTGTTAACTTTTCACTTAATACTAGAGTGCTAAAGGCTCAGGAAACCTCAAAATCATCAGACCTCATCAATCTTCCAAACATGTCGTTGACTAATGCCACCTTCATGTCCTGCAACTTCCTATCCCTTACACTCAAGAACCCGACTCTCAGAAACTCACTGCTCCAACCCCAAAACTCCAATCCCAGAATTCCACTTTCCCAGAAAAGCTCAAAAGTTCCAACCTTTTCTGCAACCCAATTTTGCAAAACTTCAATCTTTACATCCCACAAGGAAAAGGGTCGTCTCCAAATTTGTCGGAGTACCTTGAATGGTCAGAAACCAGAAGACCCAGTTTTGAGTGAGGGAGAAAATGGAGGTGCAGGGAAGAACTGGACGACTTCAATTTTGCTGTTTGTTTTGTGGGGGGCACTCATGTTCTATGTGCTCACTCTTTCCCCGAACCAGACTCCGTCAAGGGACATGTATTTCTTGAAGAAACTCTTGAATTTGAAGGGAGATGACGGTTTTCGAATGAATGACGTGCTTGTGTCTGTTTGGTACATAATGGGTTTGTGGCCTTTGGTCTATAGCATGTTGATGCTTCCAACAGCGAGAAGCTCAAAAAGCAAAGTTCCCGTCTGGCCTTTCTTGATACTTTCATGCTTTGGCGGTGTATATGCTCTTCTTCCCTATTTTGTACTGTGGAAGCCGCCGCCACCTCCTGTTGATAAAAGTGAGCTCACAAGATGGCCTCTCAACTTTCTAGAATCTAAATTGACTGCTTGGATATCACTTGCTGCAGGACTGGGAATAGTAATCTATGCAGGCCTGGCTAGTGGGGCTGACTGGAACGAATATTACCAGTACTTCAATGAAAGCAAATTTATCCATGTGATGAGCCTTGATTTCACTTTACTATCTGCATTTGCTCCGTTTTGGGTCTACAACGATATGACCTCCCGGAAATGGTTTGACAAAGGTTCTTGGCTTCTGTTCTTATCATTGGTGCCACTCATAGGCCCTGCTTTGTATCTCGTCTTACGGCCACCACTATCAGCAGAAGCAGAAGCAGCTGCACCGAGCCTCACGGAACCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLDc_N

Protein Analysis

373

Amino Acids

41.83

Weight (kDa)

9.21

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04360 AT2G04360 AT2G04360 AT2G04360
fragaria_vesca	FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480 FvH4_6g40480
malus_domestica	MD09G1129600.v1.1
prunus_persica	Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1 Prupe.3G195700_v2.0.a1
pyrus_communis	pycom09g05260
rosa_chinensis	RchiOBHm_Chr2g0155731
rosa_laevigata	RLG00000020859
rosa_multiflora	Rmu_sc0002712.1_g000017 Rmu_sc0003417.1_g000002 Rmu_sc0011953.1_g000002
rosa_rugosa	Rorug02G0449600 Rorug02G0449700
rosa_samantha	Rh2AG515600 Rh2BG526600 Rh2CG500600 Rh2DG535600
rosa_wichuraiana	Rw2G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1024
AccI	GTMKAC	1 cut(s)	960
AciI	CCGC	3 cut(s)	687, 728, 731
AcoI	YGGCCR	1 cut(s)	1061
AcsI	RAATTY	4 cut(s)	225, 327, 523, 899
AfaI	GTAC	4 cut(s)	340, 578, 717, 884
AfiI	CCNNNNNNNGG	2 cut(s)	984, 1034
AflIII	ACRYGT	2 cut(s)	117, 498
AgsI	TTSAA	7 cut(s)	291, 346, 420, 511, 523, 529, 889
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	846
AluBI	AGCT	4 cut(s)	246, 636, 757, 1091
AluI	AGCT	4 cut(s)	246, 636, 757, 1091
Alw21I	GWGCWC	2 cut(s)	465, 759
Alw26I	GTCTC	1 cut(s)	326
AoxI	GGCC	6 cut(s)	593, 659, 767, 844, 1036, 1061
ApeKI	GCWGC	3 cut(s)	815, 1088, 1091
ApoI	RAATTY	4 cut(s)	225, 327, 523, 899
ArsI	GACNNNNNNTTYG	4 cut(s)	406, 438, 639, 671
AspS9I	GGNCC	1 cut(s)	1037
AsuC2I	CCSGG	1 cut(s)	979
AsuII	TTCGAA	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	1024
BanII	GRGCYC	1 cut(s)	759
BarI	GAAGNNNNNNTAC	2 cut(s)	684, 716
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	465, 759
BbvI	GCAGC	3 cut(s)	802, 1078, 1100
BccI	CCATC	1 cut(s)	759
BceAI	ACGGC	1 cut(s)	1076
BciT130I	CCWGG	1 cut(s)	848
BcnI	CCSGG	1 cut(s)	979
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	3 cut(s)	60, 782, 852
BfmI	CTRYAG	2 cut(s)	604, 816
BisI	GCNGC	5 cut(s)	728, 731, 816, 1089, 1092
BlsI	GCNGC	5 cut(s)	729, 732, 817, 1090, 1093
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	2 cut(s)	848, 979
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	1037
BmiI	GGNNCC	2 cut(s)	1026, 1110
BmrFI	CCNGG	2 cut(s)	848, 979
BmrI	ACTGGG	2 cut(s)	362, 833
BmsI	GCATC	1 cut(s)	606
BmuI	ACTGGG	2 cut(s)	362, 833
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	2 cut(s)	984, 1034
Bse1I	ACTGG	5 cut(s)	368, 413, 828, 869, 880
BseBI	CCWGG	1 cut(s)	848
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	984, 1034
BseMII	CTCAG	2 cut(s)	89, 199
BseNI	ACTGG	5 cut(s)	368, 413, 828, 869, 880
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	802, 1078, 1100
BsgI	GTGCAG	2 cut(s)	417, 1077
BshFI	GGCC	6 cut(s)	595, 661, 769, 846, 1038, 1063
BshNI	GGYRCC	1 cut(s)	1024
BsiHKAI	GWGCWC	2 cut(s)	465, 759
BsiSI	CCGG	1 cut(s)	979
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	984, 1034
BsmAI	GTCTC	1 cut(s)	326
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	6 cut(s)	595, 661, 769, 846, 1038, 1063
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	3 cut(s)	448, 465, 759
BspACI	CCGC	3 cut(s)	687, 728, 731
BspANI	GGCC	6 cut(s)	595, 661, 769, 846, 1038, 1063
BspCNI	CTCAG	2 cut(s)	88, 198
BspLI	GGNNCC	2 cut(s)	1026, 1110
BspMAI	CTGCAG	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	705
BspT104I	TTCGAA	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	1024
BsrI	ACTGG	5 cut(s)	368, 413, 828, 869, 880
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	2 cut(s)	542, 720
Bst6I	CTCTTC	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	75, 185
BstF5I	GGATG	1 cut(s)	299
BstMAI	GTCTC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	4 cut(s)	642, 848, 857, 1088
BstNI	CCWGG	1 cut(s)	848
BstNSI	RCATGY	3 cut(s)	121, 502, 613
BstSCI	CCNGG	2 cut(s)	846, 977
BstSFI	CTRYAG	2 cut(s)	604, 816
BstSLI	GKGCMC	1 cut(s)	448
BstV1I	GCAGC	3 cut(s)	802, 1078, 1100
BstV2I	GAAGAC	1 cut(s)	369
BsuRI	GGCC	6 cut(s)	595, 661, 769, 846, 1038, 1063
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	844
Cfr13I	GGNCC	1 cut(s)	1037
Csp6I	GTAC	4 cut(s)	339, 577, 716, 883
CviAII	CATG	7 cut(s)	118, 142, 451, 499, 610, 678, 908
CviQI	GTAC	4 cut(s)	339, 577, 716, 883
DdeI	CTNAG	2 cut(s)	75, 185
EaeI	YGGCCR	1 cut(s)	1061
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	757
Eco147I	AGGCCT	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	759
Eco32I	GATATC	1 cut(s)	807
Eco53kI	GAGCTC	1 cut(s)	757
EcoICRI	GAGCTC	1 cut(s)	757
EcoO109I	RGGNCCY	1 cut(s)	1037
EcoRI	GAATTC	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	846
EcoRV	GATATC	1 cut(s)	807
EcoT38I	GRGCYC	1 cut(s)	759
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	7 cut(s)	121, 145, 454, 502, 613, 681, 911
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	7 cut(s)	117, 141, 450, 498, 609, 677, 907
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	5 cut(s)	728, 731, 816, 1089, 1092
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	5 cut(s)	728, 731, 816, 1089, 1092
FspBI	CTAG	3 cut(s)	60, 782, 852
GluI	GCNGC	5 cut(s)	728, 731, 816, 1089, 1092
HaeIII	GGCC	6 cut(s)	595, 661, 769, 846, 1038, 1063
HapII	CCGG	1 cut(s)	979
Hin1II	CATG	7 cut(s)	121, 145, 454, 502, 613, 681, 911
HincII	GTYRAC	2 cut(s)	43, 126
HindII	GTYRAC	2 cut(s)	43, 126
HinfI	GANTC	3 cut(s)	181, 484, 785
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	979
Hpy166II	GTNNAC	3 cut(s)	43, 126, 961
Hpy188I	TCNGA	4 cut(s)	97, 188, 336, 354
Hpy188III	TCNNGA	6 cut(s)	77, 172, 508, 520, 667, 782
Hpy8I	GTNNAC	3 cut(s)	43, 126, 961
HpyAV	CCTTC	2 cut(s)	148, 523
HpyCH4III	ACNGT	2 cut(s)	542, 720
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	8 cut(s)	150, 269, 282, 398, 818, 842, 941, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	642, 848, 857, 1088
HpyF3I	CTNAG	2 cut(s)	75, 185
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	7 cut(s)	121, 145, 454, 502, 613, 681, 911
KspAI	GTTAAC	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	2 cut(s)	204, 952
Lsp1109I	GCAGC	3 cut(s)	802, 1078, 1100
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	3 cut(s)	60, 782, 852
MaeII	ACGT	1 cut(s)	558
MboII	GAAGA	6 cut(s)	101, 374, 415, 523, 692, 695
MhlI	GDGCHC	3 cut(s)	448, 465, 759
MluCI	AATT	7 cut(s)	225, 275, 327, 420, 523, 791, 899
MlyI	GAGTC	2 cut(s)	175, 478
MmeI	TCCRAC	4 cut(s)	226, 281, 314, 647
MnlI	CCTC	8 cut(s)	94, 110, 373, 386, 747, 780, 985, 1112
MseI	TTAA	3 cut(s)	21, 42, 54
MslI	CAYNNNNRTG	2 cut(s)	140, 614
MspA1I	CMGCKG	1 cut(s)	1091
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	2 cut(s)	848, 979
MvaI	CCWGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	4 cut(s)	642, 848, 857, 1088
NciI	CCSGG	1 cut(s)	979
NlaIII	CATG	7 cut(s)	121, 145, 454, 502, 613, 681, 911
NlaIV	GGNNCC	2 cut(s)	1026, 1110
NspI	RCATGY	3 cut(s)	121, 502, 613
NspV	TTCGAA	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	846
PciI	ACATGT	2 cut(s)	117, 498
PciSI	GCTCTTC	1 cut(s)	705
PfeI	GAWTC	1 cut(s)	785
PflFI	GACNNNGTC	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	977
PkrI	GCNGC	5 cut(s)	729, 732, 817, 1090, 1093
PleI	GAGTC	2 cut(s)	175, 478
PpsI	GAGTC	2 cut(s)	175, 478
PscI	ACATGT	2 cut(s)	117, 498
Psp124BI	GAGCTC	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	846
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	2 cut(s)	1026, 1110
PspPI	GGNCC	1 cut(s)	1037
PsrI	GAACNNNNNNTAC	2 cut(s)	860, 892
PstI	CTGCAG	1 cut(s)	820
PsyI	GACNNNGTC	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	1091
RsaI	GTAC	4 cut(s)	340, 578, 717, 884
RsaNI	GTAC	4 cut(s)	339, 577, 716, 883
RseI	CAYNNNNRTG	2 cut(s)	140, 614
SacI	GAGCTC	1 cut(s)	759
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	21, 42, 54
SatI	GCNGC	5 cut(s)	728, 731, 816, 1089, 1092
Sau96I	GGNCC	1 cut(s)	1037
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	2 cut(s)	175, 478
ScrFI	CCNGG	2 cut(s)	848, 979
SduI	GDGCHC	3 cut(s)	448, 465, 759
SfaNI	GCATC	1 cut(s)	606
SfcI	CTRYAG	2 cut(s)	604, 816
SfuI	TTCGAA	1 cut(s)	547
SmiMI	CAYNNNNRTG	2 cut(s)	140, 614
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	7 cut(s)	225, 275, 327, 420, 523, 791, 899
SseBI	AGGCCT	1 cut(s)	846
SsiI	CCGC	3 cut(s)	687, 728, 731
SspI	AATATT	1 cut(s)	875
SspMI	CTAG	3 cut(s)	60, 782, 852
SstI	GAGCTC	1 cut(s)	759
StuI	AGGCCT	1 cut(s)	846
StyD4I	CCNGG	2 cut(s)	846, 977
TaaI	ACNGT	2 cut(s)	542, 720
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	547
TasI	AATT	7 cut(s)	225, 275, 327, 420, 523, 791, 899
TatI	WGTACW	2 cut(s)	715, 882
TauI	GCSGC	2 cut(s)	730, 733
TfiI	GAWTC	1 cut(s)	785
Tru1I	TTAA	3 cut(s)	21, 42, 54
Tru9I	TTAA	3 cut(s)	21, 42, 54
TscAI	CASTG	1 cut(s)	201
TseI	GCWGC	3 cut(s)	815, 1088, 1091
TspDTI	ATGAA	4 cut(s)	130, 566, 666, 906
TspGWI	ACGGA	2 cut(s)	477, 939
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	487
XapI	RAATTY	4 cut(s)	225, 327, 523, 899
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	3 cut(s)	121, 502, 613
XmiI	GTMKAC	1 cut(s)	960
XspI	CTAG	3 cut(s)	60, 782, 852
ZrmI	AGTACT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.