MD09G1129600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0005700
Physical Location & Seq
Forward (+)
9993734 .. 9996480
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1129600.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGTCGTTGACTAATGCCACCTTCATCTCCTGCAACTTCCCATCCCTTACGCTCAAAAACCCAACTCTCAGAAACTCACTGCTCCAACCCCAAAACTCCAATCCCAGAATTCCACTTTCCCGGAAAAGCTCAAAAGTTTCAATCTTTTCTGCAACCCAATTTTGCAAAACTTCAATCTTTACATCTCAGAACGAAAAGGGTCGTCTCCAAATTTGTCAGAGTACCTTGAATGATCAGAAACCAGAAGACCCAGTTTTGAGTGAGGGAGAAAATGGAGGTGCTGGGAAGAACTGGACGACTTCAATTTTGCTGTTTGTGTTGTGGGGGGCGCTCATGTTCTACGTGCTCACTCTTTCCCCGAACCAGACTCCGTCAAGGGACATGTATTTCTTGAAGAAACTCTTGAATTTGAAGGGAGAAGACGGTTTTAGAATGAATGAAGTGCTTGTGTCTGTTTGGTACATAATGGGTTTGTGGCCTTTGGTCTATAGCATGTTGATGCTTCCTACAGCGAGAAGCTCAAAAAGCAAAGTTCCCGTCTGGCCTTTCTTGATACTTTCATGCTTTGGCGGTGCATACGCTCTTCTTCCCTATTTTGTACTGTGGAAGCCACCACCACCTCCTGTTGATGAAAGTGAGCTCAGAAGATGGCCTCTCAACTTTCTAGAATCTAAATTGACTGCTTGGATATCACTTGCTGCAGGACTGGGAATGGTAATCTATGCAGGCCTGGCTAGTGGGGCTGACTGGAATGAATATTACCAGTACTTCAATGAAAGCAAATTTATCCATGTGATGAGCCTTGATTTCACTCTACTATCTGCATTTGCTCCGTTTTGGGTCTACAACGATATGACCTCCCGGAAATGGTTTGACAAAGGTTCTTGGCTTCTGTTCTTATCATTGGTGCCACTCATAGGCCCTGCTTTGTATCTCGTCTTACGGCCACCACTATCAGCAGACGCAGAAGCAGCTGCGCCGAGCCTCACGGAACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLDc_N

Protein Analysis

334

Amino Acids

37.52

Weight (kDa)

9.03

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 907
AccI GTMKAC 1 cut(s) 843
AciI CCGC 1 cut(s) 570
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 4 cut(s) 108, 210, 406, 782
AfaI GTAC 4 cut(s) 223, 461, 600, 767
AfiI CCNNNNNNNGG 2 cut(s) 867, 917
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 8 cut(s) 141, 174, 229, 303, 394, 406, 412, 772
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 4 cut(s) 129, 519, 640, 974
AluI AGCT 4 cut(s) 129, 519, 640, 974
Alw21I GWGCWC 2 cut(s) 348, 642
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 6 cut(s) 476, 542, 650, 727, 919, 944
ApeKI GCWGC 3 cut(s) 698, 971, 974
ApoI RAATTY 4 cut(s) 108, 210, 406, 782
ArsI GACNNNNNNTTYG 4 cut(s) 289, 321, 522, 554
AspLEI GCGC 2 cut(s) 331, 979
AspS9I GGNCC 1 cut(s) 920
AsuC2I CCSGG 2 cut(s) 121, 862
BanI GGYRCC 1 cut(s) 907
BanII GRGCYC 1 cut(s) 642
BbsI GAAGAC 2 cut(s) 252, 426
Bbv12I GWGCWC 2 cut(s) 348, 642
BbvI GCAGC 3 cut(s) 685, 961, 983
BccI CCATC 2 cut(s) 49, 642
BceAI ACGGC 1 cut(s) 959
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 2 cut(s) 121, 862
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 2 cut(s) 665, 735
BfmI CTRYAG 3 cut(s) 487, 507, 699
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 3 cut(s) 699, 972, 975
BlsI GCNGC 3 cut(s) 700, 973, 976
BmcAI AGTACT 1 cut(s) 767
Bme1390I CCNGG 3 cut(s) 121, 731, 862
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 2 cut(s) 909, 993
BmrFI CCNGG 3 cut(s) 121, 731, 862
BmrI ACTGGG 2 cut(s) 245, 716
BmsI GCATC 1 cut(s) 489
BmuI ACTGGG 2 cut(s) 245, 716
BpiI GAAGAC 2 cut(s) 252, 426
BpuMI CCSGG 2 cut(s) 121, 862
BsaAI YACGTR 1 cut(s) 343
Bsc4I CCNNNNNNNGG 2 cut(s) 867, 917
Bse1I ACTGG 5 cut(s) 251, 296, 711, 752, 763
BseBI CCWGG 1 cut(s) 731
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 867, 917
BseMII CTCAG 3 cut(s) 82, 200, 655
BseNI ACTGG 5 cut(s) 251, 296, 711, 752, 763
BseXI GCAGC 3 cut(s) 685, 961, 983
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 6 cut(s) 478, 544, 652, 729, 921, 946
BshNI GGYRCC 1 cut(s) 907
BsiHKAI GWGCWC 2 cut(s) 348, 642
BsiSI CCGG 2 cut(s) 121, 862
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 867, 917
BsmAI GTCTC 1 cut(s) 209
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 6 cut(s) 478, 544, 652, 729, 921, 946
Bsp1286I GDGCHC 2 cut(s) 348, 642
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 570
BspANI GGCC 6 cut(s) 478, 544, 652, 729, 921, 946
BspCNI CTCAG 3 cut(s) 81, 199, 654
BspLI GGNNCC 2 cut(s) 909, 993
BspMAI CTGCAG 1 cut(s) 703
BspQI GCTCTTC 1 cut(s) 588
BspT107I GGYRCC 1 cut(s) 907
BsrI ACTGG 5 cut(s) 251, 296, 711, 752, 763
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 2 cut(s) 425, 603
Bst6I CTCTTC 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 727
BstDEI CTNAG 3 cut(s) 68, 186, 641
BstF5I GGATG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 2 cut(s) 331, 979
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 4 cut(s) 525, 731, 740, 971
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 2 cut(s) 385, 496
BstSCI CCNGG 3 cut(s) 119, 729, 860
BstSFI CTRYAG 3 cut(s) 487, 507, 699
BstV1I GCAGC 3 cut(s) 685, 961, 983
BstV2I GAAGAC 2 cut(s) 252, 426
BsuRI GGCC 6 cut(s) 478, 544, 652, 729, 921, 946
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 727
CfoI GCGC 2 cut(s) 331, 979
Cfr13I GGNCC 1 cut(s) 920
CseI GACGC 1 cut(s) 971
Csp6I GTAC 4 cut(s) 222, 460, 599, 766
CviAII CATG 5 cut(s) 334, 382, 493, 561, 791
CviQI GTAC 4 cut(s) 222, 460, 599, 766
DdeI CTNAG 3 cut(s) 68, 186, 641
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Ecl136II GAGCTC 1 cut(s) 640
Eco147I AGGCCT 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 642
Eco32I GATATC 1 cut(s) 690
Eco53kI GAGCTC 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 920
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 729
EcoRV GATATC 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 642
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 5 cut(s) 337, 385, 496, 564, 794
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 392
FatI CATG 5 cut(s) 333, 381, 492, 560, 790
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 3 cut(s) 699, 972, 975
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 3 cut(s) 699, 972, 975
FspBI CTAG 2 cut(s) 665, 735
GlaI GCGC 2 cut(s) 330, 978
GluI GCNGC 3 cut(s) 699, 972, 975
GsaI CCCAGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 6 cut(s) 478, 544, 652, 729, 921, 946
HapII CCGG 2 cut(s) 121, 862
HgaI GACGC 1 cut(s) 971
HhaI GCGC 2 cut(s) 331, 979
Hin1II CATG 5 cut(s) 337, 385, 496, 564, 794
Hin6I GCGC 2 cut(s) 329, 977
HinP1I GCGC 2 cut(s) 329, 977
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 2 cut(s) 367, 668
HpaII CCGG 2 cut(s) 121, 862
Hpy166II GTNNAC 2 cut(s) 9, 844
Hpy188I TCNGA 5 cut(s) 71, 189, 219, 237, 644
Hpy188III TCNNGA 4 cut(s) 391, 403, 550, 665
Hpy8I GTNNAC 2 cut(s) 9, 844
HpyAV CCTTC 2 cut(s) 31, 406
HpyCH4III ACNGT 2 cut(s) 425, 603
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 7 cut(s) 33, 152, 165, 575, 701, 725, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 525, 731, 740, 971
HpyF3I CTNAG 3 cut(s) 68, 186, 641
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 5 cut(s) 337, 385, 496, 564, 794
HspAI GCGC 2 cut(s) 329, 977
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 2 cut(s) 87, 835
Lsp1109I GCAGC 3 cut(s) 685, 961, 983
LweI GCATC 1 cut(s) 489
MaeI CTAG 2 cut(s) 665, 735
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 7 cut(s) 257, 298, 406, 431, 575, 578, 657
MhlI GDGCHC 2 cut(s) 348, 642
MluCI AATT 7 cut(s) 108, 158, 210, 303, 406, 674, 782
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 6 cut(s) 256, 269, 630, 663, 868, 995
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 2 cut(s) 121, 862
MspR9I CCNGG 3 cut(s) 121, 731, 862
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 4 cut(s) 525, 731, 740, 971
NciI CCSGG 2 cut(s) 121, 862
NdeII GATC 1 cut(s) 232
NlaIII CATG 5 cut(s) 337, 385, 496, 564, 794
NlaIV GGNNCC 2 cut(s) 909, 993
NspI RCATGY 2 cut(s) 385, 496
PceI AGGCCT 1 cut(s) 729
PciI ACATGT 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 668
PflFI GACNNNGTC 1 cut(s) 370
PfoI TCCNGGA 2 cut(s) 119, 860
PkrI GCNGC 3 cut(s) 700, 973, 976
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 343
PscI ACATGT 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 729
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 2 cut(s) 909, 993
PspPI GGNCC 1 cut(s) 920
PstI CTGCAG 1 cut(s) 703
PsyI GACNNNGTC 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 4 cut(s) 223, 461, 600, 767
RsaNI GTAC 4 cut(s) 222, 460, 599, 766
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 642
SapI GCTCTTC 1 cut(s) 588
SatI GCNGC 3 cut(s) 699, 972, 975
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 920
ScaI AGTACT 1 cut(s) 767
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 3 cut(s) 121, 731, 862
SduI GDGCHC 2 cut(s) 348, 642
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 3 cut(s) 487, 507, 699
SmiMI CAYNNNNRTG 1 cut(s) 497
Sse9I AATT 7 cut(s) 108, 158, 210, 303, 406, 674, 782
SseBI AGGCCT 1 cut(s) 729
SsiI CCGC 1 cut(s) 570
SspI AATATT 1 cut(s) 758
SspMI CTAG 2 cut(s) 665, 735
SstI GAGCTC 1 cut(s) 642
StuI AGGCCT 1 cut(s) 729
StyD4I CCNGG 3 cut(s) 119, 729, 860
TaaI ACNGT 2 cut(s) 425, 603
TaiI ACGT 1 cut(s) 345
TasI AATT 7 cut(s) 108, 158, 210, 303, 406, 674, 782
TatI WGTACW 2 cut(s) 598, 765
TfiI GAWTC 1 cut(s) 668
TscAI CASTG 1 cut(s) 84
TseI GCWGC 3 cut(s) 698, 971, 974
TspDTI ATGAA 7 cut(s) 13, 449, 453, 549, 645, 768, 789
TspGWI ACGGA 2 cut(s) 360, 822
TspRI CASTG 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 370
XapI RAATTY 4 cut(s) 108, 210, 406, 782
XbaI TCTAGA 1 cut(s) 664
XceI RCATGY 2 cut(s) 385, 496
XmiI GTMKAC 1 cut(s) 843
XspI CTAG 2 cut(s) 665, 735
ZrmI AGTACT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.