Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015269

Physical Location & Seq

Genomic Coordinates Forward (+)

1576694 .. 1578962

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAGCTTTCTTCTTCGTTTCCAATTTCACCTCCCAAAATCTTCCCTTCCACCAAACACCATAAACCTCCAGTGATTACTCACCAGCTCGCCGCACAGATACAGAGCAACCGTAGACATTTCGTGAGTCCCGTCAAAGTCTCTGGCTATTTCTCATCGATTAGCCGAGCTATTGAGGAAGAAGAAGAGTATCGGAAAGCACGCGCTGCAGTGAACCGTAAAGGTGTCGAATTGGAGAGTTATGCAATTGAAGGGATCTCTGTAGGTGGGCACGAGACTTGTGTTATCGTCCCTGAGCTCAAATGTGTCTTTGATATTGGGAGGTGCCCTTCTCGTGCTATTCAGCAGAAGTTTCTTTTTATCACTCATGCCCATCTTGACCATATCGGAGGGCTTCCAATGTATGTAGCGAGCCGTGGTTTATACAATCTTGAGCCACCGAAAATATTTGTGCCACCATCTATTAAAGAAGATGTTGAGAAACTTCTTGAGATTCACAGGACTATGGGTCAAGTAGAGTTGAATGTAGAATTGATACCACTTGCTGTAGGTGAAACATATGAGTTGCGCAATGACATTGTTGTTAGACCATTTGCAACTCACCATGTTATACCAAGTCAGGGTTATGTCATCTATTCGGTCAGGAAGAAGTTGCAGAAGCAGTATGCTCACCTCAAAGGAAAACAGATAGAAAAGATTAAAAAGTCTGGCGTCGAGATTACGGACACGATATTATCCCCCGAGATAGCCTTCACTGGAGATACAACTTCAGAGTATATGCTTGACCCTCGTAATGCTGATGCGTTGAGGGCAAAAGTTCTTATAACTGAGGCAACTTTCTTGGATGAAAGTTTTAGCACTGAGCATGCGCAAGCACTCGGTCATACTCATATATCTCAGATTATTGAGAATGCAAAGTGGATCCGGAGCAAAACTGTATTATTGACGCATTTCTCATCACGTTACCATGTAGAGGAAATCCGTGAAGCTGTGCTTAAGTTGCAATCGAAAGTATCCGCAAAAGTCATTCCTCTTACAGAAGGTTTCAGGTCAAGATATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

354

Amino Acids

39.95

Weight (kDa)

9.02

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_2	PF12706	118 - 318	4.6e-10	Beta-lactamase superfamily domain
Anti-Pycsar_Apyc1	PF23023	118 - 323	1.5e-09	Anti-Pycsar protein Apyc1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04530
fragaria_vesca	FvH4_6g41771 FvH4_6g41771 FvH4_6g41771 FvH4_6g41771
malus_domestica	MD09G1117300.v1.1
prunus_persica	Prupe.3G206500_v2.0.a1
pyrus_communis	pycom09g04240
rosa_chinensis	RchiOBHm_Chr2g0157561
rosa_laevigata	RLG00000020998
rosa_roxburghii	Rroxscaffold_2G00092120
rosa_rugosa	Rorug02G0462100
rosa_samantha	Rh2AG526200 Rh2BG540900 Rh2CG510900 Rh2DG549400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
Acc16I	TGCGCA	2 cut(s)	569, 870
AccB1I	GGYRCC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	924
AciI	CCGC	2 cut(s)	93, 1017
AclWI	GGATC	3 cut(s)	263, 916, 929
AcuI	CTGAAG	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	711
AfiI	CCNNNNNNNGG	2 cut(s)	620, 973
AflII	CTTAAG	1 cut(s)	995
AgsI	TTSAA	2 cut(s)	251, 523
AhdI	GACNNNNNGTC	1 cut(s)	507
AluBI	AGCT	5 cut(s)	7, 88, 170, 298, 989
AluI	AGCT	5 cut(s)	7, 88, 170, 298, 989
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	145, 269
AlwI	GGATC	3 cut(s)	263, 916, 929
Ama87I	CYCGRG	1 cut(s)	740
Aor13HI	TCCGGA	1 cut(s)	924
ApeKI	GCWGC	2 cut(s)	4, 206
AspLEI	GCGC	3 cut(s)	206, 570, 871
AsuHPI	GGTGA	5 cut(s)	21, 74, 563, 593, 662
AvaI	CYCGRG	1 cut(s)	740
BaeGI	GKGCMC	2 cut(s)	273, 329
BamHI	GGATCC	1 cut(s)	921
BanI	GGYRCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	2 cut(s)	272, 333
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	16, 193
BccI	CCATC	2 cut(s)	381, 466
BceAI	ACGGC	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	1024
BcoDI	GTCTC	2 cut(s)	145, 269
BfmI	CTRYAG	3 cut(s)	207, 261, 546
BfrI	CTTAAG	1 cut(s)	995
BfuI	GTATCC	1 cut(s)	1024
BisI	GCNGC	3 cut(s)	5, 93, 207
BlsI	GCNGC	3 cut(s)	6, 94, 208
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	740
BmiI	GGNNCC	2 cut(s)	326, 923
BmsI	GCATC	1 cut(s)	790
BpmI	CTGGAG	2 cut(s)	54, 777
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	452, 509
Bsa29I	ATCGAT	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	711
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	924
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 973
Bse1I	ACTGG	2 cut(s)	71, 760
Bse3DI	GCAATG	1 cut(s)	577
BseAI	TCCGGA	1 cut(s)	924
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	850
BseLI	CCNNNNNNNGG	2 cut(s)	620, 973
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	4 cut(s)	285, 819, 852, 911
BseNI	ACTGG	2 cut(s)	71, 760
BseSI	GKGCMC	2 cut(s)	273, 329
BseXI	GCAGC	2 cut(s)	16, 193
Bsh1236I	CGCG	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	925
BslFI	GGGAC	2 cut(s)	114, 275
BslI	CCNNNNNNNGG	2 cut(s)	620, 973
BsmAI	GTCTC	2 cut(s)	145, 269
BsmFI	GGGAC	2 cut(s)	114, 275
BsmI	GAATGC	1 cut(s)	916
BsoBI	CYCGRG	1 cut(s)	740
Bsp1286I	GDGCHC	3 cut(s)	273, 300, 329
Bsp13I	TCCGGA	1 cut(s)	924
Bsp143I	GATC	2 cut(s)	255, 921
BspACI	CCGC	2 cut(s)	93, 1017
BspCNI	CTCAG	4 cut(s)	286, 820, 853, 910
BspDI	ATCGAT	1 cut(s)	158
BspEI	TCCGGA	1 cut(s)	924
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	326, 923
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	3 cut(s)	263, 916, 929
BspT107I	GGYRCC	1 cut(s)	324
BspTI	CTTAAG	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	71, 760
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	2 cut(s)	255, 921
BssNI	GRCGYC	1 cut(s)	711
BssSI	CACGAG	2 cut(s)	272, 333
Bst2BI	CACGAG	2 cut(s)	272, 333
Bst4CI	ACNGT	3 cut(s)	113, 218, 937
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	711
BstAFI	CTTAAG	1 cut(s)	995
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	5 cut(s)	90, 202, 412, 867, 873
BstDEI	CTNAG	4 cut(s)	294, 828, 861, 897
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	850
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	206, 570, 871
BstKTI	GATC	2 cut(s)	258, 924
BstMAI	GTCTC	2 cut(s)	145, 269
BstMBI	GATC	2 cut(s)	255, 921
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 809, 1000
BstNSI	RCATGY	1 cut(s)	869
BstSFI	CTRYAG	3 cut(s)	207, 261, 546
BstSLI	GKGCMC	2 cut(s)	273, 329
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	16, 193
BstX2I	RGATCY	2 cut(s)	255, 921
BstYI	RGATCY	2 cut(s)	255, 921
Bsu15I	ATCGAT	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	1024
BsuTUI	ATCGAT	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	4 cut(s)	78, 216, 753, 858
Cac8I	GCNNGC	5 cut(s)	90, 202, 412, 867, 873
CfoI	GCGC	3 cut(s)	206, 570, 871
ClaI	ATCGAT	1 cut(s)	158
CseI	GACGC	2 cut(s)	700, 955
CviAII	CATG	4 cut(s)	368, 605, 866, 968
DdeI	CTNAG	4 cut(s)	294, 828, 861, 897
DpnI	GATC	2 cut(s)	257, 923
DpnII	GATC	2 cut(s)	255, 921
DriI	GACNNNNNGTC	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	180
Eam1105I	GACNNNNNGTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	4 cut(s)	371, 608, 869, 971
FalI	AAGNNNNNCTT	3 cut(s)	978, 1010, 1045
FaqI	GGGAC	2 cut(s)	114, 275
FatI	CATG	4 cut(s)	367, 604, 865, 967
FauNDI	CATATG	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	5, 93, 207
FokI	GGATG	1 cut(s)	857
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	5, 93, 207
FspI	TGCGCA	2 cut(s)	569, 870
GlaI	GCGC	3 cut(s)	205, 569, 870
GluI	GCNGC	3 cut(s)	5, 93, 207
GsuI	CTGGAG	2 cut(s)	54, 777
HapII	CCGG	1 cut(s)	925
HgaI	GACGC	2 cut(s)	700, 955
HhaI	GCGC	3 cut(s)	206, 570, 871
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	4 cut(s)	371, 608, 869, 971
Hin6I	GCGC	3 cut(s)	204, 568, 869
HinP1I	GCGC	3 cut(s)	204, 568, 869
HinfI	GANTC	2 cut(s)	127, 493
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	5 cut(s)	21, 74, 563, 593, 662
Hpy166II	GTNNAC	2 cut(s)	116, 214
Hpy188I	TCNGA	4 cut(s)	195, 389, 772, 900
Hpy188III	TCNNGA	8 cut(s)	124, 377, 431, 488, 643, 715, 925, 1053
Hpy8I	GTNNAC	2 cut(s)	116, 214
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	5 cut(s)	57, 245, 339, 760, 1034
HpyCH4III	ACNGT	3 cut(s)	113, 218, 937
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	7 cut(s)	4, 209, 245, 596, 655, 914, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 809, 1000
HpyF3I	CTNAG	4 cut(s)	294, 828, 861, 897
HpySE526I	ACGT	1 cut(s)	961
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	4 cut(s)	371, 608, 869, 971
HspAI	GCGC	3 cut(s)	204, 568, 869
Kpn2I	TCCGGA	1 cut(s)	924
Kzo9I	GATC	2 cut(s)	255, 921
LmnI	GCTCC	1 cut(s)	927
Lsp1109I	GCAGC	2 cut(s)	16, 193
LweI	GCATC	1 cut(s)	790
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	2 cut(s)	257, 923
MboI	GATC	2 cut(s)	255, 921
MboII	GAAGA	8 cut(s)	3, 6, 34, 191, 194, 197, 482, 658
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	2 cut(s)	255, 921
MhlI	GDGCHC	3 cut(s)	273, 300, 329
MluCI	AATT	4 cut(s)	24, 230, 246, 530
MlyI	GAGTC	1 cut(s)	136
MroI	TCCGGA	1 cut(s)	924
MseI	TTAA	4 cut(s)	465, 699, 996, 1063
MspCI	CTTAAG	1 cut(s)	995
MspI	CCGG	1 cut(s)	925
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	916
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	206, 809, 1000
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	2 cut(s)	255, 921
NlaIII	CATG	4 cut(s)	371, 608, 869, 971
NlaIV	GGNNCC	2 cut(s)	326, 923
NmeAIII	GCCGAG	1 cut(s)	191
NsbI	TGCGCA	2 cut(s)	569, 870
NspI	RCATGY	1 cut(s)	869
PaeI	GCATGC	1 cut(s)	869
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	916
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	6, 94, 208
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	824
Psp124BI	GAGCTC	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	326, 923
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	255, 921
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	465, 699, 996, 1063
SatI	GCNGC	3 cut(s)	5, 93, 207
Sau3AI	GATC	2 cut(s)	255, 921
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	3 cut(s)	273, 300, 329
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	3 cut(s)	207, 261, 546
SmlI	CTYRAG	3 cut(s)	431, 488, 995
SmoI	CTYRAG	3 cut(s)	431, 488, 995
SphI	GCATGC	1 cut(s)	869
Sse9I	AATT	4 cut(s)	24, 230, 246, 530
SsiI	CCGC	2 cut(s)	93, 1017
SspI	AATATT	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	300
TaaI	ACNGT	3 cut(s)	113, 218, 937
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	4 cut(s)	158, 228, 714, 1007
TaqII	GACCGA	2 cut(s)	628, 869
TasI	AATT	4 cut(s)	24, 230, 246, 530
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	4 cut(s)	465, 699, 996, 1063
Tru9I	TTAA	4 cut(s)	465, 699, 996, 1063
TscAI	CASTG	4 cut(s)	78, 216, 760, 865
TseI	GCWGC	2 cut(s)	4, 206
TspDTI	ATGAA	1 cut(s)	861
TspGWI	ACGGA	2 cut(s)	737, 971
TspRI	CASTG	4 cut(s)	78, 216, 760, 865
Vha464I	CTTAAG	1 cut(s)	995
XceI	RCATGY	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.