Rorug02G0462100

Ribonuclease z

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015269
Physical Location & Seq
Reverse (-)
59369695 .. 59371104
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0462100.1

Sequence Viewer

Length: 279 bp
ATGAAGCGCACAATGCAGAATGGTATAAACCTAACGGTCATGGGGATGCTCTTGTTCAGCTGCTCACTCAATCTGGCGTTCTGCTCACTCAATCTGGCGTTCCAATTAGTAACTTCCGGATGTCTTGACGATGAGCGATCAATTGCAATTTGTGCTCCATATATCCCGGCCACAACGATCATGCAATGTGAACTAGAGCAAAAATGGGATTCTAAGAAGAAGCGAGGTTATGCCACTAGAGTTTCTTCTGAAGTTAAAAGGCCGGACATGGACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Lactamase_B_2

Protein Analysis

92

Amino Acids

10.33

Weight (kDa)

8.33

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04530
fragaria_vesca FvH4_6g41771 FvH4_6g41771 FvH4_6g41771 FvH4_6g41771
malus_domestica MD09G1117300.v1.1
prunus_persica Prupe.3G206500_v2.0.a1
pyrus_communis pycom09g04240
rosa_chinensis RchiOBHm_Chr2g0157561
rosa_laevigata RLG00000020998
rosa_roxburghii Rroxscaffold_2G00092120
rosa_rugosa Rorug02G0462100
rosa_samantha Rh2AG526200 Rh2BG540900 Rh2CG510900 Rh2DG549400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 270
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 2 cut(s) 168, 260
ApeKI GCWGC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 167
BfaI CTAG 2 cut(s) 194, 237
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 116
BseGI GGATG 2 cut(s) 51, 125
BseMI GCAATG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 2 cut(s) 170, 262
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 117, 167, 263
BsnI GGCC 2 cut(s) 170, 262
Bsp1286I GDGCHC 1 cut(s) 157
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 137, 177
BspANI GGCC 2 cut(s) 170, 262
BspEI TCCGGA 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 191
BssMI GATC 2 cut(s) 137, 177
Bst4CI ACNGT 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 51, 125
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 2 cut(s) 140, 180
BstMBI GATC 2 cut(s) 137, 177
BstMWI GCNNNNNNNGC 2 cut(s) 13, 152
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 47
BsuRI GGCC 2 cut(s) 170, 262
BtsCI GGATG 2 cut(s) 51, 125
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 271
CviAII CATG 3 cut(s) 40, 181, 268
CviJI RGCY 3 cut(s) 60, 170, 262
CviKI_1 RGCY 3 cut(s) 60, 170, 262
DdeI CTNAG 1 cut(s) 213
DpnI GATC 2 cut(s) 139, 179
DpnII GATC 2 cut(s) 137, 177
EaeI YGGCCR 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 270
FaeI CATG 3 cut(s) 43, 184, 271
FaiI YATR 7 cut(s) 26, 41, 160, 162, 182, 231, 269
FatI CATG 3 cut(s) 39, 180, 267
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 58, 132
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 194, 237
GlaI GCGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 2 cut(s) 170, 262
HapII CCGG 3 cut(s) 117, 167, 263
HhaI GCGC 1 cut(s) 9
Hin1II CATG 3 cut(s) 43, 184, 271
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 1 cut(s) 209
HpaII CCGG 3 cut(s) 117, 167, 263
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 117, 125
Hpy8I GTNNAC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 16, 146, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 152
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 3 cut(s) 43, 184, 271
HspAI GCGC 1 cut(s) 7
Kpn2I TCCGGA 1 cut(s) 116
Kzo9I GATC 2 cut(s) 137, 177
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 59, 80, 130, 180
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 36
MaeI CTAG 2 cut(s) 194, 237
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 139, 179
MboI GATC 2 cut(s) 137, 177
MboII GAAGA 2 cut(s) 229, 237
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 3 cut(s) 104, 141, 147
MnlI CCTC 1 cut(s) 218
MroI TCCGGA 1 cut(s) 116
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 3 cut(s) 117, 167, 263
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 13, 152
NciI CCSGG 1 cut(s) 167
NdeII GATC 2 cut(s) 137, 177
NlaIII CATG 3 cut(s) 43, 184, 271
NlaIV GGNNCC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 2 cut(s) 137, 177
Sau96I GGNCC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 157
SetI ASST 3 cut(s) 33, 62, 229
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 3 cut(s) 104, 141, 147
SspMI CTAG 2 cut(s) 194, 237
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 37
TasI AATT 3 cut(s) 104, 141, 147
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 271
XspI CTAG 2 cut(s) 194, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.