Prupe.3G206500_v2.0.a1

Ribonuclease z

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015269
Physical Location & Seq
Forward (+)
21350214 .. 21353149
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G206500.1

Sequence Viewer

Length: 1056 bp
ATGCAAATCTTTCTGACAATTTCACCCTGCAAAGCCCCTCTAATTCTCCCATTCCACCCACCCATTTCAAAGACGCCAAAAACCCAGAGAACTTCACTGAAAACTCTTTCCAAACCTGTAAATTCTCTTAAAGGGTCGCCTCTTTTACCGGCATTCGGCCGAGCAATCGAGGATGACGAGTACCGGCTAGCCCGTTCACAGGTTCTCCGGAAAGGTGTGGACTTGGAAGGCTATTCCATTGAGGGTCTTTCAATTGGTGGCCATGAGACTTGCATTATCATCCCAGAGTTCAAGTGCGCTTTCGACATCGGCAGGTGCCCCTCCAGGGCCATTCATCAGAACTTCGTTTTCATCACTCATGCTCATCTTGATCATATTGGTGGGCTGCCAATGTATGTAGCCAGCCGTGGTTTGTACAACTTAAAACCTCCAACAGTATTTGTGCCTCCTTGTATCAAAGAGGATGTGGAGAAGCTAATAGACATTCACCAGACCATGGGCCACGTGGAATTGAACCTTGATTTGGTTGCATTGGATGTGGGTGAGACATATGAAATGCGGAATAACCTTGTTGTCCGGCCATTTAGGACTGACCATGCTATACCCAGCCAGGGTTATGTTATTTACTCGGTTAGAAAAAAGCTGAAGAAACAGTACATGCATCTAAAAGGGAAACAGATTGAGAAATTGAAGAAGTCTGGTGTGGAGATTACAGATGTTATATTGTCACCAGAGGTGGCCTTCACAGGGGATACAACATCAGACTATATGCTGGATCCACGCAATGCTGATGCCTTGAGGGCAAAGGTTCTTATAACTGAGGCAACTTTTCTGGATGAAGGGTGCAGCATTGAGCATGCACGACAACATGGTCATACTCATATAGACGAGATCATTGAAAACGCCCAATGGATTAGAAATAAGTCAGTTCTGTTGACCCATTTCTCCTCCCGCTACCATTTAGAGGACATTCGTCAAGCTGTATCAAAGTTGCAGTCTAAGCTCTCGGCAAAAGTGGTGCCTCTTACAGAGGGTTTCAAATCTATGCACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Lactamase_B_2

Protein Analysis

352

Amino Acids

39.46

Weight (kDa)

8.74

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04530
fragaria_vesca FvH4_6g41771 FvH4_6g41771 FvH4_6g41771 FvH4_6g41771
malus_domestica MD09G1117300.v1.1
prunus_persica Prupe.3G206500_v2.0.a1
pyrus_communis pycom09g04240
rosa_chinensis RchiOBHm_Chr2g0157561
rosa_laevigata RLG00000020998
rosa_roxburghii Rroxscaffold_2G00092120
rosa_rugosa Rorug02G0462100
rosa_samantha Rh2AG526200 Rh2BG540900 Rh2CG510900 Rh2DG549400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 815
AarI CACCTGC 1 cut(s) 303
AasI GACNNNNNNGTC 1 cut(s) 870
Acc36I ACCTGC 1 cut(s) 303
AccB1I GGYRCC 2 cut(s) 315, 1018
AccB7I CCANNNNNTGG 1 cut(s) 496
AccIII TCCGGA 1 cut(s) 207
AciI CCGC 2 cut(s) 559, 952
AclWI GGATC 2 cut(s) 770, 783
AcoI YGGCCR 3 cut(s) 157, 259, 578
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 665
AcvI CACGTG 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 3 cut(s) 182, 416, 656
AfiI CCNNNNNNNGG 8 cut(s) 155, 199, 325, 496, 523, 611, 747, 964
AgsI TTSAA 7 cut(s) 69, 252, 292, 514, 691, 899, 1039
AjnI CCWGG 2 cut(s) 323, 609
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 4 cut(s) 475, 643, 980, 1003
AluI AGCT 4 cut(s) 475, 643, 980, 1003
Alw26I GTCTC 2 cut(s) 260, 539
AlwI GGATC 2 cut(s) 770, 783
Aor13HI TCCGGA 1 cut(s) 207
AoxI GGCC 6 cut(s) 157, 259, 327, 499, 578, 738
ApeKI GCWGC 2 cut(s) 385, 846
ApoI RAATTY 1 cut(s) 121
ArsI GACNNNNNNTTYG 2 cut(s) 980, 1012
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 327, 499
AsuHPI GGTGA 4 cut(s) 15, 479, 554, 720
AsuNHI GCTAGC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 261
BamHI GGATCC 1 cut(s) 775
BanI GGYRCC 2 cut(s) 315, 1018
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
BbrPI CACGTG 1 cut(s) 505
BbvI GCAGC 2 cut(s) 372, 858
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 2 cut(s) 325, 611
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 260, 539
BfaI CTAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 303
BfuI GTATCC 1 cut(s) 745
BglI GCCNNNNNGGC 1 cut(s) 800
BisI GCNGC 2 cut(s) 386, 847
BlsI GCNGC 2 cut(s) 387, 848
Bme1390I CCNGG 2 cut(s) 325, 611
BmgT120I GGNCC 2 cut(s) 327, 499
BmiI GGNNCC 3 cut(s) 317, 777, 1020
BmrFI CCNGG 2 cut(s) 325, 611
BmsI GCATC 2 cut(s) 670, 781
BmtI GCTAGC 1 cut(s) 191
BoxI GACNNNNGTC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 817
BsaAI YACGTR 1 cut(s) 505
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 4 cut(s) 324, 406, 495, 610
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 8 cut(s) 155, 199, 325, 496, 523, 611, 747, 964
Bse118I RCCGGY 2 cut(s) 148, 183
Bse3DI GCAATG 1 cut(s) 790
BseAI TCCGGA 1 cut(s) 207
BseBI CCWGG 2 cut(s) 325, 611
BseDI CCNNGG 4 cut(s) 324, 406, 495, 610
BseGI GGATG 5 cut(s) 178, 279, 469, 541, 841
BseLI CCNNNNNNNGG 8 cut(s) 155, 199, 325, 496, 523, 611, 747, 964
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 1 cut(s) 810
BseRI GAGGAG 1 cut(s) 937
BseSI GKGCMC 1 cut(s) 320
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 372, 858
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 865
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 6 cut(s) 159, 261, 329, 501, 580, 740
BshNI GGYRCC 2 cut(s) 315, 1018
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 4 cut(s) 149, 184, 208, 577
BslI CCNNNNNNNGG 8 cut(s) 155, 199, 325, 496, 523, 611, 747, 964
BsmAI GTCTC 2 cut(s) 260, 539
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 6 cut(s) 159, 261, 329, 501, 580, 740
Bsp1286I GDGCHC 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 3 cut(s) 370, 775, 891
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 2 cut(s) 559, 952
BspANI GGCC 6 cut(s) 159, 261, 329, 501, 580, 740
BspCNI CTCAG 1 cut(s) 811
BspEI TCCGGA 1 cut(s) 207
BspLI GGNNCC 3 cut(s) 317, 777, 1020
BspMI ACCTGC 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 770, 783
BspT107I GGYRCC 2 cut(s) 315, 1018
BsrDI GCAATG 1 cut(s) 790
BsrFI RCCGGY 2 cut(s) 148, 183
BsrGI TGTACA 1 cut(s) 414
BssAI RCCGGY 2 cut(s) 148, 183
BssECI CCNNGG 4 cut(s) 324, 406, 495, 610
BssMI GATC 3 cut(s) 370, 775, 891
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 325, 611
Bst4CI ACNGT 2 cut(s) 436, 654
BstACI GRCGYC 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 4 cut(s) 189, 403, 858, 1050
BstDEI CTNAG 3 cut(s) 819, 999, 1053
BstDSI CCRYGG 2 cut(s) 406, 495
BstF5I GGATG 5 cut(s) 178, 279, 469, 541, 841
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 3 cut(s) 373, 778, 894
BstMAI GTCTC 2 cut(s) 260, 539
BstMBI GATC 3 cut(s) 370, 775, 891
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 800, 1000
BstNI CCWGG 2 cut(s) 325, 611
BstNSI RCATGY 2 cut(s) 661, 860
BstPAI GACNNNNGTC 1 cut(s) 972
BstSCI CCNGG 2 cut(s) 323, 609
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 372, 858
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BstZI CGGCCG 1 cut(s) 157
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 6 cut(s) 159, 261, 329, 501, 580, 740
BtgI CCRYGG 2 cut(s) 406, 495
BtsCI GGATG 5 cut(s) 178, 279, 469, 541, 841
BtsIMutI CAGTG 1 cut(s) 95
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 4 cut(s) 189, 403, 858, 1050
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 2 cut(s) 148, 183
Cfr13I GGNCC 2 cut(s) 327, 499
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 181, 415, 655
CviAII CATG 7 cut(s) 263, 359, 496, 596, 658, 857, 869
CviQI GTAC 3 cut(s) 181, 415, 655
DdeI CTNAG 3 cut(s) 819, 999, 1053
DpnI GATC 3 cut(s) 372, 777, 893
DpnII GATC 3 cut(s) 370, 775, 891
DrdI GACNNNNNNGTC 1 cut(s) 870
DseDI GACNNNNNNGTC 1 cut(s) 870
EaeI YGGCCR 3 cut(s) 157, 259, 578
EagI CGGCCG 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 495
Eco52I CGGCCG 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 665
Eco72I CACGTG 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 323, 609
EcoT14I CCWWGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 7 cut(s) 266, 362, 499, 599, 661, 860, 872
FatI CATG 7 cut(s) 262, 358, 495, 595, 657, 856, 868
FauI CCCGC 1 cut(s) 959
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 386, 847
FokI GGATG 5 cut(s) 185, 266, 476, 548, 848
Fsp4HI GCNGC 2 cut(s) 386, 847
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 298
GluI GCNGC 2 cut(s) 386, 847
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 6 cut(s) 159, 261, 329, 501, 580, 740
HapII CCGG 4 cut(s) 149, 184, 208, 577
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 7 cut(s) 266, 362, 499, 599, 661, 860, 872
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 1 cut(s) 936
HindII GTYRAC 1 cut(s) 936
HpaII CCGG 4 cut(s) 149, 184, 208, 577
HphI GGTGA 4 cut(s) 15, 479, 554, 720
Hpy166II GTNNAC 3 cut(s) 197, 220, 936
Hpy188I TCNGA 3 cut(s) 15, 339, 763
Hpy188III TCNNGA 3 cut(s) 208, 368, 833
Hpy8I GTNNAC 3 cut(s) 197, 220, 936
HpyAV CCTTC 3 cut(s) 221, 751, 833
HpyCH4III ACNGT 2 cut(s) 436, 654
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 9 cut(s) 4, 30, 273, 530, 661, 846, 860, 994, 1048
HpyF10VI GCNNNNNNNGC 2 cut(s) 800, 1000
HpyF3I CTNAG 3 cut(s) 819, 999, 1053
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 7 cut(s) 266, 362, 499, 599, 661, 860, 872
HspAI GCGC 1 cut(s) 297
Kpn2I TCCGGA 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 370, 775, 891
Lsp1109I GCAGC 2 cut(s) 372, 858
LweI GCATC 2 cut(s) 670, 781
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 726
MalI GATC 3 cut(s) 372, 777, 893
MboI GATC 3 cut(s) 370, 775, 891
MboII GAAGA 2 cut(s) 658, 703
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 6 cut(s) 18, 42, 121, 252, 509, 686
MluNI TGGCCA 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 455
Mox20I TGGCCA 1 cut(s) 261
Mph1103I ATGCAT 1 cut(s) 663
MroI TCCGGA 1 cut(s) 207
MscI TGGCCA 1 cut(s) 261
MseI TTAA 2 cut(s) 129, 422
MslI CAYNNNNRTG 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 261
MspI CCGG 4 cut(s) 149, 184, 208, 577
MspR9I CCNGG 2 cut(s) 325, 611
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 2 cut(s) 325, 611
MwoI GCNNNNNNNGC 2 cut(s) 800, 1000
NcoI CCATGG 1 cut(s) 495
NdeI CATATG 1 cut(s) 550
NdeII GATC 3 cut(s) 370, 775, 891
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 7 cut(s) 266, 362, 499, 599, 661, 860, 872
NlaIV GGNNCC 3 cut(s) 317, 777, 1020
NmeAIII GCCGAG 2 cut(s) 185, 986
NmuCI GTSAC 1 cut(s) 726
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 2 cut(s) 661, 860
PaeI GCATGC 1 cut(s) 860
PaqCI CACCTGC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 496
PkrI GCNGC 2 cut(s) 387, 848
PmaCI CACGTG 1 cut(s) 505
PmlI CACGTG 1 cut(s) 505
Ppu21I YACGTR 1 cut(s) 505
PshAI GACNNNNGTC 1 cut(s) 972
PsiI TTATAA 1 cut(s) 815
Psp6I CCWGG 2 cut(s) 323, 609
PspCI CACGTG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 2 cut(s) 323, 609
PspN4I GGNNCC 3 cut(s) 317, 777, 1020
PspPI GGNCC 2 cut(s) 327, 499
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 3 cut(s) 182, 416, 656
RsaNI GTAC 3 cut(s) 181, 415, 655
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 129, 422
SatI GCNGC 2 cut(s) 386, 847
Sau3AI GATC 3 cut(s) 370, 775, 891
Sau96I GGNCC 2 cut(s) 327, 499
ScrFI CCNGG 2 cut(s) 325, 611
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 2 cut(s) 670, 781
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SphI GCATGC 1 cut(s) 860
Sse9I AATT 6 cut(s) 18, 42, 121, 252, 509, 686
SsiI CCGC 2 cut(s) 559, 952
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 323, 609
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 2 cut(s) 436, 654
TaiI ACGT 1 cut(s) 507
TaqI TCGA 2 cut(s) 168, 303
TasI AATT 6 cut(s) 18, 42, 121, 252, 509, 686
TatI WGTACW 2 cut(s) 414, 654
Tru1I TTAA 2 cut(s) 129, 422
Tru9I TTAA 2 cut(s) 129, 422
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 726
TseI GCWGC 2 cut(s) 385, 846
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 4 cut(s) 323, 340, 567, 852
TspRI CASTG 1 cut(s) 102
Van91I CCANNNNNTGG 1 cut(s) 496
XapI RAATTY 1 cut(s) 121
XceI RCATGY 2 cut(s) 661, 860
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XspI CTAG 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.