Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006888

Physical Location & Seq

Genomic Coordinates Forward (+)

1644456 .. 1646443

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAACTTCAAGTCCTTGTTCTTCGTCCAATCTTCTTCTTCTTCTTCTTCGTCTTCTTGACAATTCTACAACAATCCTCTTCTGCTCGGGTTCTTACAATCACCAAGCCTGATAGACATGACTACGCCGCAAGTGCTCGTTGGCTTGTCTCTCAGAATTCTTGGGGTGTTCTTAGCACACTATCCGTTGATCATAAAGGCGCTCCCTTCGGGAATGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGTAACGGTATACCTTACTTTTACTTAACAACACTTGATCCAACTGCAAGAAACGCACTTAAAGACCAGAGAGCTTCACTTGCAATTAGTGAATCTCCTCTTGGAACTTGTACAAGAGATCCAATGAATCCTACTTGCTCTAAACTAACCCTTACCGGGAAGTTGCTGATATTGGAAGGAGGATCTGAGGAAGCAGAAGTAGCCAAAAAGGCTTTATTCACAAAGCATCCAGAGATGATGGATTGGCCTAAGGATCATGATTTCCGCTTCTTTAAACTCGAGATCATCGATATATTTCTCATCAATTGGTATGGTGGAGCTAAACCTATCACTGTAGATGAATACCTTCATGCCAAGTCGATCAAACTCGCTTCCTTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

210

Amino Acids

23.59

Weight (kDa)

6.96

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CREG_beta-barrel	PF13883	37 - 199	3.1e-59	CREG, beta-barrel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04690 AT2G04690 AT2G04690 AT2G04690 AT2G04690 AT2G04690
fragaria_vesca	FvH4_6g50030 FvH4_6g50030 FvH4_6g50030 FvH4_6g50030 FvH4_6g50030
malus_domestica	MD17G1040700.v1.1
prunus_persica	Prupe.3G278300_v2.0.a1
pyrus_communis	pycom17g03650
rosa_chinensis	RchiOBHm_Chr2g0170291
rosa_laevigata	RLG00000021944
rosa_multiflora	Rmu_sc0012445.1_g000002 Rmu_sc0012468.1_g000030
rosa_roxburghii	Rroxscaffold_2G00081460
rosa_rugosa	Rorug02G0547900 Rorug02G0548000
rosa_samantha	Rh2AG619300 Rh2BG630200 Rh2CG600300 Rh2DG643100
rosa_wichuraiana	Rw2G051300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	2 cut(s)	129, 514
AclWI	GGATC	4 cut(s)	281, 362, 439, 510
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	2 cut(s)	248, 405
AgsI	TTSAA	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	2 cut(s)	323, 569
AluI	AGCT	2 cut(s)	323, 569
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	4 cut(s)	281, 362, 439, 510
Ama87I	CYCGRG	3 cut(s)	87, 242, 527
AoxI	GGCC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	3 cut(s)	87, 242, 527
AxyI	CCTNAGG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	2 cut(s)	227, 481
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	204
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	406
BmeT110I	CYCGRG	3 cut(s)	87, 242, 527
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 405
Bse21I	CCTNAGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	537
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	248, 405
BseMII	CTCAG	2 cut(s)	167, 426
BseRI	GAGGAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	496
BshVI	ATCGAT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	139
BsiHKCI	CYCGRG	3 cut(s)	87, 242, 527
BsiSI	CCGG	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	248, 405
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	496
BsoBI	CYCGRG	3 cut(s)	87, 242, 527
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
BspACI	CCGC	2 cut(s)	129, 514
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	2 cut(s)	166, 427
BspDI	ATCGAT	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	505
BspPI	GGATC	4 cut(s)	281, 362, 439, 510
BsrGI	TGTACA	1 cut(s)	359
BssMI	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
BssNAI	GTATAC	1 cut(s)	260
Bst1107I	GTATAC	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	257, 583
Bst6I	CTCTTC	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	153, 173, 435, 498
BstF5I	GGATG	1 cut(s)	475
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	7 cut(s)	193, 289, 370, 434, 505, 534, 612
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 302, 329, 449, 458
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	582
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	367, 431
BstYI	RGATCY	2 cut(s)	367, 431
BstZ17I	GTATAC	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	537
Bsu36I	CCTNAGG	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	496
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	579
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	3 cut(s)	119, 506, 599
CviJI	RGCY	7 cut(s)	109, 145, 323, 452, 461, 496, 569
CviKI_1	RGCY	7 cut(s)	109, 145, 323, 452, 461, 496, 569
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	4 cut(s)	153, 173, 435, 498
DpnI	GATC	7 cut(s)	192, 288, 369, 433, 504, 533, 611
DpnII	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
DraI	TTTAAA	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	498
Eco88I	CYCGRG	3 cut(s)	87, 242, 527
EcoRI	GAATTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	122, 509, 602
FaiI	YATR	8 cut(s)	120, 195, 260, 507, 542, 561, 600, 631
FatI	CATG	3 cut(s)	118, 505, 598
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	129
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	122, 509, 602
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	341, 376
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	239, 260
Hpy188I	TCNGA	2 cut(s)	156, 436
Hpy188III	TCNNGA	5 cut(s)	58, 211, 479, 506, 529
Hpy8I	GTNNAC	2 cut(s)	239, 260
HpyAV	CCTTC	3 cut(s)	217, 419, 605
HpyCH4III	ACNGT	2 cut(s)	257, 583
HpyCH4V	TGCA	2 cut(s)	296, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 302, 329, 449, 458
HpyF3I	CTNAG	4 cut(s)	153, 173, 435, 498
Hsp92II	CATG	3 cut(s)	122, 509, 602
HspAI	GCGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
LmnI	GCTCC	2 cut(s)	208, 566
LpnPI	CCDG	4 cut(s)	123, 329, 418, 492
LweI	GCATC	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	7 cut(s)	192, 288, 369, 433, 504, 533, 611
MboI	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
MboII	GAAGA	9 cut(s)	14, 25, 28, 31, 34, 37, 40, 46, 72
MfeI	CAATTG	1 cut(s)	553
MflI	RGATCY	2 cut(s)	367, 431
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	4 cut(s)	63, 157, 333, 553
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	88, 357, 422, 430
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	3 cut(s)	275, 309, 522
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	406
MunI	CAATTG	1 cut(s)	553
MwoI	GCNNNNNNNGC	5 cut(s)	134, 302, 329, 449, 458
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
NlaIII	CATG	3 cut(s)	122, 509, 602
PaeR7I	CTCGAG	1 cut(s)	527
PagI	TCATGA	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	341, 376
PkrI	GCNGC	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	631
PsuI	RGATCY	2 cut(s)	367, 431
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	275, 309, 522
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	7 cut(s)	190, 286, 367, 431, 502, 531, 609
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	6 cut(s)	253, 265, 325, 571, 577, 597
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	582
Sfr274I	CTCGAG	1 cut(s)	527
SlaI	CTCGAG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	4 cut(s)	63, 157, 333, 553
SsiI	CCGC	2 cut(s)	129, 514
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	257, 583
TaqI	TCGA	3 cut(s)	528, 537, 608
TasI	AATT	4 cut(s)	63, 157, 333, 553
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	341, 376
Tru1I	TTAA	3 cut(s)	275, 309, 522
Tru9I	TTAA	3 cut(s)	275, 309, 522
TscAI	CASTG	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	389, 587, 603
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	527
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.