Prupe.3G278300_v2.0.a1

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006888
Physical Location & Seq
Forward (+)
25527630 .. 25530179
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G278300.1

Sequence Viewer

Length: 645 bp
ATGAAGATCAAAGGTCTTGTTCACTTTGTTTATGCAATCTGCTTGGTTTCTGTCCTGTTGGGTATCCAAGGACCTGTACACGGACGGCTACTCTCACTGAAGAAACCCGACCCGGAAAATGCTGCTGCCACTGCTCGTTGGTTGGTCTCTCAGAATTCCTGGGGTGTCTTAAATACTATCTCAAGCGAATTGGGAGGAGCACCCTTTGGGAATGTGGTCTCGTTTAGTGATGGAGAACCCGGAAATGGTAGGGGTATCCCATACTTCTACTTGACAACTCTGGATCCCACTGCAAGAAATGCACTGAAAGACCAGAGGGCTTCGTTGACAATTAGTGAATATCCTATTGGAACCTGTGGGAAGACAGACCCTGAGAACCCCACTTGTGCAAAGATTACACTTACAGGAAAGTTGAAGCTTGCTGATAAAGATTCCAAAGAAACAGAGTTTGCTAAGAATGCCTTGTTCTCAAAGCATCCAGAGATGAAGGATTGGCCCAAGAATCACAATTTCGAGTTCTTCAAATTAGACATTGAGAATATCTTCTTGATTGATTGGTTTGGTGGTCCAAAACCTCTCACAGTGGATCAATACCTTCACACCCGAACGACAGAATACGCCTTCATTCTGGGATTTCTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

215

Amino Acids

23.7

Weight (kDa)

7.71

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 278, 291, 594
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 80, 245
AgsI TTSAA 2 cut(s) 415, 523
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 151, 223
AlwI GGATC 3 cut(s) 278, 291, 594
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 122, 125
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 542
AspS9I GGNCC 3 cut(s) 71, 495, 566
AsuC2I CCSGG 2 cut(s) 113, 240
AvaII GGWCC 2 cut(s) 71, 566
BamHI GGATCC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 109, 112
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 2 cut(s) 74, 266
BcnI CCSGG 2 cut(s) 113, 240
BcoDI GTCTC 2 cut(s) 151, 223
BfuI GTATCC 2 cut(s) 74, 266
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 3 cut(s) 113, 160, 240
Bme18I GGWCC 2 cut(s) 71, 566
BmgT120I GGNCC 3 cut(s) 71, 495, 566
BmiI GGNNCC 2 cut(s) 285, 352
BmrFI CCNGG 3 cut(s) 113, 160, 240
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 113, 240
BsaI GGTCTC 2 cut(s) 151, 223
BsaJI CCNNGG 2 cut(s) 67, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 245
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 67, 159
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 2 cut(s) 80, 245
BseMII CTCAG 2 cut(s) 164, 363
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 109, 112
BshFI GGCC 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 113, 240
BslI CCNNNNNNNGG 2 cut(s) 80, 245
BsmAI GTCTC 2 cut(s) 151, 223
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 496
Bso31I GGTCTC 2 cut(s) 151, 223
Bsp1286I GDGCHC 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 76
Bsp143I GATC 3 cut(s) 6, 283, 586
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 2 cut(s) 163, 364
BspLI GGNNCC 2 cut(s) 285, 352
BspPI GGATC 3 cut(s) 278, 291, 594
BspTNI GGTCTC 2 cut(s) 151, 223
BsrGI TGTACA 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 67, 159
BssMI GATC 3 cut(s) 6, 283, 586
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 583
BstAPI GCANNNNNTGC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 3 cut(s) 150, 372, 453
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 3 cut(s) 9, 286, 589
BstMAI GTCTC 2 cut(s) 151, 223
BstMBI GATC 3 cut(s) 6, 283, 586
BstMWI GCNNNNNNNGC 3 cut(s) 131, 299, 458
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 111, 158, 238
BstV1I GCAGC 2 cut(s) 109, 112
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 2 cut(s) 74, 266
BsuRI GGCC 1 cut(s) 496
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 2 cut(s) 129, 288
BtsIMutI CAGTG 5 cut(s) 95, 129, 288, 302, 588
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 371
Cfr13I GGNCC 3 cut(s) 71, 495, 566
Csp6I GTAC 1 cut(s) 77
CviJI RGCY 4 cut(s) 88, 320, 418, 496
CviKI_1 RGCY 4 cut(s) 88, 320, 418, 496
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 3 cut(s) 150, 372, 453
DpnI GATC 3 cut(s) 8, 285, 588
DpnII GATC 3 cut(s) 6, 283, 586
Eco130I CCWWGG 1 cut(s) 67
Eco31I GGTCTC 2 cut(s) 151, 223
Eco47I GGWCC 2 cut(s) 71, 566
Eco57I CTGAAG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaiI YATR 2 cut(s) 33, 262
FalI AAGNNNNNCTT 2 cut(s) 446, 478
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 1 cut(s) 462
Fsp4HI GCNGC 2 cut(s) 123, 126
GluI GCNGC 2 cut(s) 123, 126
HaeIII GGCC 1 cut(s) 496
HapII CCGG 2 cut(s) 113, 240
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 2 cut(s) 431, 502
HpaII CCGG 2 cut(s) 113, 240
Hpy166II GTNNAC 3 cut(s) 22, 79, 327
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 3 cut(s) 281, 479, 547
Hpy8I GTNNAC 3 cut(s) 22, 79, 327
HpyAV CCTTC 3 cut(s) 481, 605, 631
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4V TGCA 4 cut(s) 35, 293, 302, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 299, 458
HpyF3I CTNAG 3 cut(s) 150, 372, 453
Kzo9I GATC 3 cut(s) 6, 283, 586
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 2 cut(s) 109, 112
LweI GCATC 1 cut(s) 484
MalI GATC 3 cut(s) 8, 285, 588
MboI GATC 3 cut(s) 6, 283, 586
MboII GAAGA 5 cut(s) 16, 112, 373, 511, 535
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 5 cut(s) 154, 188, 330, 508, 524
MnlI CCTC 3 cut(s) 188, 309, 585
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 1 cut(s) 170
MspI CCGG 2 cut(s) 113, 240
MspR9I CCNGG 3 cut(s) 113, 160, 240
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 131, 299, 458
NciI CCSGG 2 cut(s) 113, 240
NdeII GATC 3 cut(s) 6, 283, 586
NlaIV GGNNCC 2 cut(s) 285, 352
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 2 cut(s) 431, 502
PkrI GCNGC 2 cut(s) 124, 127
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 285, 352
PspPI GGNCC 3 cut(s) 71, 495, 566
PspPPI RGGWCCY 1 cut(s) 71
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 3 cut(s) 6, 283, 586
Sau96I GGNCC 3 cut(s) 71, 495, 566
ScrFI CCNGG 3 cut(s) 113, 160, 240
SduI GDGCHC 1 cut(s) 202
SetI ASST 6 cut(s) 16, 76, 356, 420, 577, 597
SfaNI GCATC 1 cut(s) 484
SinI GGWCC 2 cut(s) 71, 566
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 5 cut(s) 154, 188, 330, 508, 524
StyD4I CCNGG 3 cut(s) 111, 158, 238
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 583
TaqI TCGA 1 cut(s) 513
TasI AATT 5 cut(s) 154, 188, 330, 508, 524
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 2 cut(s) 431, 502
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 5 cut(s) 102, 136, 295, 309, 588
TseI GCWGC 2 cut(s) 122, 125
TspDTI ATGAA 3 cut(s) 17, 500, 613
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 5 cut(s) 102, 136, 295, 309, 588
VpaK11BI GGWCC 2 cut(s) 71, 566
XapI RAATTY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.