Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006888

Physical Location & Seq

Genomic Coordinates Reverse (-)

2440939 .. 2443165

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03650.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACGATGACGACGATGATCAAAGGGCTTGTTCACTTCGTGTTCGCAGTCTACTTGGTTTCTCTACTGTCGGGTATCCAACTGCCTGTGGATGGGCGGGTTCTCTTGCTGAAGAAACCCGACCCGGAAAATGCTGCCGCCACTGCTCGTTGGTTGGTCGCTCAGAATTCCTGGGGCGTCTTGAATACTATCTCAAGTGAATTGGGAGGAGCACCCTTCGGGAATGTGGTTTCATTTAGCGATGGAGAACCTGGAAATGGCCGTGGTATCCCTTACTTCTACTTGACAACTCTTGATCCGACTGCAAGAAACGCATTGAATGATCCAAGAGCTTCGTTGACAATTAGTGAGCATCCTATTGGAACCTGCGGCAAGAGAGACCCTGAGAATCCCACTTGTGCAAAGCTTACACTTAACGGGAAGCTGAAGCTTGCGGATCCCAAAGAAACAGAATTTGCTATAAGTGCCTTGTTCACAAAGCATCCGGAGATGAAGGACTGGCCCAAGGATCACAACTTCCAGTTCTTCAAATTAGACATCGAGAATATCTTTCTGATCGATTGGTTTGGCGGTCCAAAACCTCTCACAGTCGATCAGTACCTTCATCTCAAAACGACAGAGAACGCCTTGATTCGAGGATTACTCGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

218

Amino Acids

23.94

Weight (kDa)

6.51

Isoelectric Point (pI)

17.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04690 AT2G04690 AT2G04690 AT2G04690 AT2G04690 AT2G04690
fragaria_vesca	FvH4_6g50030 FvH4_6g50030 FvH4_6g50030 FvH4_6g50030 FvH4_6g50030
malus_domestica	MD17G1040700.v1.1
prunus_persica	Prupe.3G278300_v2.0.a1
pyrus_communis	pycom17g03650
rosa_chinensis	RchiOBHm_Chr2g0170291
rosa_laevigata	RLG00000021944
rosa_multiflora	Rmu_sc0012445.1_g000002 Rmu_sc0012468.1_g000030
rosa_roxburghii	Rroxscaffold_2G00081460
rosa_rugosa	Rorug02G0547900 Rorug02G0548000
rosa_samantha	Rh2AG619300 Rh2BG630200 Rh2CG600300 Rh2DG643100
rosa_wichuraiana	Rw2G051300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	5 cut(s)	97, 138, 369, 434, 570
AclWI	GGATC	5 cut(s)	290, 317, 431, 444, 516
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	2 cut(s)	166, 452
AcuI	CTGAAG	2 cut(s)	131, 446
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	2 cut(s)	92, 257
AgsI	TTSAA	3 cut(s)	184, 319, 529
AjnI	CCWGG	2 cut(s)	170, 250
AluBI	AGCT	4 cut(s)	332, 406, 424, 430
AluI	AGCT	4 cut(s)	332, 406, 424, 430
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	5 cut(s)	290, 317, 431, 444, 516
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	2 cut(s)	259, 500
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	166, 452
AspS9I	GGNCC	2 cut(s)	501, 572
AsuC2I	CCSGG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	86, 236
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	172, 252
BciVI	GTATCC	2 cut(s)	86, 278
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	2 cut(s)	86, 278
BisI	GCNGC	3 cut(s)	135, 138, 370
BlsI	GCNGC	3 cut(s)	136, 139, 371
Bme1390I	CCNGG	3 cut(s)	125, 172, 252
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	501, 572
BmiI	GGNNCC	2 cut(s)	364, 438
BmrFI	CCNGG	3 cut(s)	125, 172, 252
BmsI	GCATC	2 cut(s)	361, 490
BplI	GAGNNNNNCTC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	171, 262, 504
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 257
Bse1I	ACTGG	2 cut(s)	503, 520
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	2 cut(s)	172, 252
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	3 cut(s)	171, 262, 504
BseGI	GGATG	3 cut(s)	97, 352, 481
BseLI	CCNNNNNNNGG	2 cut(s)	92, 257
BseMII	CTCAG	2 cut(s)	176, 375
BseNI	ACTGG	2 cut(s)	503, 520
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	2 cut(s)	261, 502
BshVI	ATCGAT	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	125, 485
BslI	CCNNNNNNNGG	2 cut(s)	92, 257
BsmAI	GTCTC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	261, 502
Bso31I	GGTCTC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
BspACI	CCGC	5 cut(s)	97, 138, 369, 434, 570
BspANI	GGCC	2 cut(s)	261, 502
BspCNI	CTCAG	2 cut(s)	175, 376
BspDI	ATCGAT	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	364, 438
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	5 cut(s)	290, 317, 431, 444, 516
BspTNI	GGTCTC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	503, 520
BssECI	CCNNGG	3 cut(s)	171, 262, 504
BssMI	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	2 cut(s)	172, 252
Bst4CI	ACNGT	2 cut(s)	69, 589
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	162, 384
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	97, 352, 481
BstKTI	GATC	8 cut(s)	21, 298, 325, 439, 511, 558, 595, 651
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 311, 464
BstNI	CCWGG	2 cut(s)	172, 252
BstSCI	CCNGG	3 cut(s)	123, 170, 250
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	558
BsuI	GTATCC	2 cut(s)	86, 278
BsuRI	GGCC	2 cut(s)	261, 502
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	97, 352, 481
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	501, 572
ClaI	ATCGAT	1 cut(s)	558
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	598
CviJI	RGCY	7 cut(s)	28, 261, 332, 406, 424, 430, 502
CviKI_1	RGCY	7 cut(s)	28, 261, 332, 406, 424, 430, 502
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	162, 384
DpnI	GATC	8 cut(s)	20, 297, 324, 438, 510, 557, 594, 650
DpnII	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
DraIII	CACNNNGTG	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	2 cut(s)	131, 446
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	170, 250
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaiI	YATR	1 cut(s)	461
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	135, 138, 370
FokI	GGATG	3 cut(s)	104, 339, 468
Fsp4HI	GCNGC	3 cut(s)	135, 138, 370
GluI	GCNGC	3 cut(s)	135, 138, 370
HaeIII	GGCC	2 cut(s)	261, 502
HapII	CCGG	2 cut(s)	125, 485
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	2 cut(s)	404, 428
HinfI	GANTC	2 cut(s)	388, 631
HpaII	CCGG	2 cut(s)	125, 485
Hpy166II	GTNNAC	4 cut(s)	34, 52, 339, 474
Hpy188I	TCNGA	3 cut(s)	165, 300, 555
Hpy188III	TCNNGA	6 cut(s)	181, 220, 293, 485, 541, 646
Hpy8I	GTNNAC	4 cut(s)	34, 52, 339, 474
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	226, 487, 611
HpyCH4III	ACNGT	2 cut(s)	69, 589
HpyCH4V	TGCA	2 cut(s)	305, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 311, 464
HpyF3I	CTNAG	2 cut(s)	162, 384
Hsp92I	GRCGYC	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	484
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	361, 490
MalI	GATC	8 cut(s)	20, 297, 324, 438, 510, 557, 594, 650
MboI	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
MboII	GAAGA	2 cut(s)	124, 517
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	5 cut(s)	166, 200, 342, 452, 530
MmeI	TCCRAC	2 cut(s)	103, 323
MnlI	CCTC	3 cut(s)	200, 591, 629
MroI	TCCGGA	1 cut(s)	484
MseI	TTAA	1 cut(s)	414
MspI	CCGG	2 cut(s)	125, 485
MspR9I	CCNGG	3 cut(s)	125, 172, 252
MvaI	CCWGG	2 cut(s)	172, 252
MwoI	GCNNNNNNNGC	3 cut(s)	143, 311, 464
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
NlaIV	GGNNCC	2 cut(s)	364, 438
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	388, 631
PkrI	GCNGC	3 cut(s)	136, 139, 371
Psp6I	CCWGG	2 cut(s)	170, 250
PspGI	CCWGG	2 cut(s)	170, 250
PspN4I	GGNNCC	2 cut(s)	364, 438
PspPI	GGNCC	2 cut(s)	501, 572
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	3 cut(s)	135, 138, 370
Sau3AI	GATC	8 cut(s)	18, 295, 322, 436, 508, 555, 592, 648
Sau96I	GGNCC	2 cut(s)	501, 572
ScrFI	CCNGG	3 cut(s)	125, 172, 252
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	8 cut(s)	253, 334, 368, 408, 426, 432, 583, 603
SfaNI	GCATC	2 cut(s)	361, 490
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	5 cut(s)	166, 200, 342, 452, 530
SsiI	CCGC	5 cut(s)	97, 138, 369, 434, 570
StyD4I	CCNGG	3 cut(s)	123, 170, 250
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	69, 589
TaqI	TCGA	4 cut(s)	540, 558, 591, 634
TasI	AATT	5 cut(s)	166, 200, 342, 452, 530
TauI	GCSGC	2 cut(s)	140, 372
TfiI	GAWTC	2 cut(s)	388, 631
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	222, 506, 593
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	166, 452
XmiI	GTMKAC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.