RLG00000021944

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006888
Physical Location & Seq
Forward (+)
79450327 .. 79452313
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021944

Sequence Viewer

Length: 633 bp
ATGAAACCGCTTCTTCACTTGGTTTCTGTAATCTACGTGGTTTCTGTGTTTCTGGGTATCCATGGACCTGTTGTATACGGGCGGTTACTATTAGTGAAGGATAAACCCGACCCGAAAAATGCTGCTGCCACTGCTCGTTGGCTGGTGTCCCAGAATTCCTGGGGTGTCTTGAATACCATCTCAGGTGAATTGGGAGGAGCACCCTTTGGGAATGTGGTTTCATTTAGTGATGGGGAACCTGGAAAAGGAAGTGGTATCCCATACTTCTACTTGACAACTCTTGATCCGACTGCAAGAAATGCACTGAAAGACCAAAGGGCTTCTTTGACAATTAGTGAGCATCCTATTGGAACCTGTGGCAAAGTTGACCCTGAAAACCCCACCTGTGCAAAGATAACACTTACAGGAAAGTTGAAGATTGCTAATGGAGGGCCCAAAGAACAAGAAATTGCTAGAAAAGCCTTGTTCTCAAAGCATCCAGAGATGAAAGACTGGCCCAAGGGTCACAACTTCAAGTTCTTCAAGTTAGACATCGAGGATATCTTTTTGATCGATTGGTTTGGGGGTCCAAAACCTCTCACAGTGGACCAATACCTTCAAGCCAAATTGACAGAACCGGCCTTCATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

211

Amino Acids

22.97

Weight (kDa)

8.97

Isoelectric Point (pI)

18.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CREG_beta-barrel PF13883 36 - 199 2.9e-62 CREG, beta-barrel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AciI CCGC 2 cut(s) 8, 82
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 5 cut(s) 172, 415, 514, 523, 599
AjnI CCWGG 2 cut(s) 158, 238
Alw21I GWGCWC 1 cut(s) 202
AlwI GGATC 1 cut(s) 278
AoxI GGCC 3 cut(s) 431, 494, 618
ApaI GGGCCC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 122, 125
ApoI RAATTY 1 cut(s) 154
AspS9I GGNCC 6 cut(s) 65, 431, 432, 495, 566, 586
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 3 cut(s) 65, 566, 586
BaeGI GKGCMC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 109, 112
BccI CCATC 2 cut(s) 185, 224
BciT130I CCWGG 2 cut(s) 160, 240
BciVI GTATCC 2 cut(s) 68, 266
BfaI CTAG 1 cut(s) 453
BfuI GTATCC 2 cut(s) 68, 266
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 2 cut(s) 160, 240
Bme18I GGWCC 3 cut(s) 65, 566, 586
BmgT120I GGNCC 6 cut(s) 65, 431, 432, 495, 566, 586
BmiI GGNNCC 4 cut(s) 237, 352, 433, 567
BmrFI CCNGG 2 cut(s) 160, 240
BmsI GCATC 2 cut(s) 349, 484
Bsa29I ATCGAT 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 61, 159, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 1 cut(s) 497
BseBI CCWGG 2 cut(s) 160, 240
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 61, 159, 498
BseGI GGATG 2 cut(s) 340, 475
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 2 cut(s) 109, 112
BshFI GGCC 3 cut(s) 433, 496, 620
BshVI ATCGAT 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 617
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 3 cut(s) 433, 496, 620
Bsp120I GGGCCC 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 202, 435
Bsp143I GATC 2 cut(s) 283, 549
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 2 cut(s) 8, 82
BspANI GGCC 3 cut(s) 433, 496, 620
BspCNI CTCAG 1 cut(s) 194
BspDI ATCGAT 1 cut(s) 552
BspLI GGNNCC 4 cut(s) 237, 352, 433, 567
BspPI GGATC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 616
BsrI ACTGG 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 3 cut(s) 61, 159, 498
BssMI GATC 2 cut(s) 283, 549
BssNAI GTATAC 1 cut(s) 76
BssT1I CCWWGG 2 cut(s) 61, 498
Bst1107I GTATAC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 160, 240
Bst4CI ACNGT 1 cut(s) 583
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 61
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 340, 475
BstKTI GATC 2 cut(s) 286, 552
BstMBI GATC 2 cut(s) 283, 549
BstMWI GCNNNNNNNGC 3 cut(s) 131, 299, 458
BstNI CCWGG 2 cut(s) 160, 240
BstSCI CCNGG 2 cut(s) 158, 238
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 2 cut(s) 109, 112
BstZ17I GTATAC 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 552
BsuI GTATCC 2 cut(s) 68, 266
BsuRI GGCC 3 cut(s) 433, 496, 620
BsuTUI ATCGAT 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 340, 475
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 129, 302, 588
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 6 cut(s) 65, 431, 432, 495, 566, 586
ClaI ATCGAT 1 cut(s) 552
CviAII CATG 1 cut(s) 62
CviJI RGCY 7 cut(s) 142, 320, 433, 461, 496, 602, 620
CviKI_1 RGCY 7 cut(s) 142, 320, 433, 461, 496, 602, 620
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 285, 551
DpnII GATC 2 cut(s) 283, 549
Eco130I CCWWGG 2 cut(s) 61, 498
Eco24I GRGCYC 1 cut(s) 435
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 3 cut(s) 65, 566, 586
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 158, 238
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 61, 498
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 2 cut(s) 61, 498
FaeI CATG 1 cut(s) 65
FaiI YATR 3 cut(s) 63, 76, 262
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 61
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 2 cut(s) 327, 462
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 1 cut(s) 453
GluI GCNGC 2 cut(s) 123, 126
HaeIII GGCC 3 cut(s) 433, 496, 620
HapII CCGG 1 cut(s) 617
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HpaII CCGG 1 cut(s) 617
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 3 cut(s) 76, 367, 586
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 169, 281, 479
Hpy8I GTNNAC 3 cut(s) 76, 367, 586
HpyAV CCTTC 3 cut(s) 91, 605, 631
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 293, 302, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 299, 458
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 2 cut(s) 283, 549
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 2 cut(s) 109, 112
LweI GCATC 2 cut(s) 349, 484
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 84, 503
MalI GATC 2 cut(s) 285, 551
MboI GATC 2 cut(s) 283, 549
MboII GAAGA 3 cut(s) 5, 427, 511
MhlI GDGCHC 2 cut(s) 202, 435
MluCI AATT 5 cut(s) 154, 188, 330, 447, 605
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 4 cut(s) 188, 422, 529, 585
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 160, 240
MvaI CCWGG 2 cut(s) 160, 240
MwoI GCNNNNNNNGC 3 cut(s) 131, 299, 458
NcoI CCATGG 1 cut(s) 61
NdeII GATC 2 cut(s) 283, 549
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 4 cut(s) 237, 352, 433, 567
NmuCI GTSAC 1 cut(s) 503
PkrI GCNGC 2 cut(s) 124, 127
Ppu21I YACGTR 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 158, 238
PspGI CCWGG 2 cut(s) 158, 238
PspN4I GGNNCC 4 cut(s) 237, 352, 433, 567
PspOMI GGGCCC 1 cut(s) 431
PspPI GGNCC 6 cut(s) 65, 431, 432, 495, 566, 586
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 2 cut(s) 283, 549
Sau96I GGNCC 6 cut(s) 65, 431, 432, 495, 566, 586
ScrFI CCNGG 2 cut(s) 160, 240
SduI GDGCHC 2 cut(s) 202, 435
SetI ASST 8 cut(s) 39, 70, 187, 241, 356, 386, 577, 597
SfaNI GCATC 2 cut(s) 349, 484
SinI GGWCC 3 cut(s) 65, 566, 586
Sse9I AATT 5 cut(s) 154, 188, 330, 447, 605
SsiI CCGC 2 cut(s) 8, 82
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 158, 238
StyI CCWWGG 2 cut(s) 61, 498
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 534, 552
TasI AATT 5 cut(s) 154, 188, 330, 447, 605
TscAI CASTG 3 cut(s) 136, 309, 588
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 2 cut(s) 122, 125
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 4 cut(s) 17, 210, 500, 613
TspRI CASTG 3 cut(s) 136, 309, 588
VpaK11BI GGWCC 3 cut(s) 65, 566, 586
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.