FvH4_6g50030

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006888
Physical Location & Seq
Forward (+)
37318719 .. 37321170
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50030.t1

Sequence Viewer

Length: 636 bp
ATGAAGATTACAGCGCTTGTTCATTTGGTTTCTGTAATCTACGTGGTTTCTGTGTTGCTGGGTATGCATGAAGCTGTACACGGGAGGCTTCTATCAGCGAAGGATAAACCCAGCCCCAAAAATGCTGCTGCTACTGCTCGTTGGCTTGTCTCTCAGAACTCCTGGGGTGTCTTGAATACCATCTCAGGTGAATTGGGAGGAGCACCCTTTGGGAATGTGGTTTCATTTAGCGATGGGGAACCTGGAAAAGGCAGCGGTATCCCATACTTCTACTTGACAACTCTTGATCCGACTGCAAGAAATGCAGGGAAAGACCAAAGGGCTTCATTGACAATTAGTGAGCATCCTATTGGAACCTGTGGCAAAGTTGACCCTGAGAATCCCACCTGTGCAAAGATTACACTTACAGGAAAGTTGAGGTATGCCAATGGAAGTCCCAAAGAAAAAGAAATTGCTAAAAAGGCCTTGTTCTCAAAGCATCCAGAGATGAAATACTGGCCCAAGGGTCACAACTTCCAGTTCTTCAAATTAGACATCGAGAATATCTTTTTGATTGATTGGTTTGGGGGTCCAAAACCTCTCACAGTGGACCAATACCTTCAAGCCAAATTGACAGAACATGCCTTCAACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

212

Amino Acids

23.08

Weight (kDa)

9.24

Isoelectric Point (pI)

24.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CREG_beta-barrel PF13883 37 - 200 5.2e-62 CREG, beta-barrel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 281
AfaI GTAC 1 cut(s) 78
AfeI AGCGCT 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 4 cut(s) 175, 526, 602, 628
AjnI CCWGG 2 cut(s) 161, 241
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 281
Aor51HI AGCGCT 1 cut(s) 15
AoxI GGCC 2 cut(s) 462, 497
ApeKI GCWGC 3 cut(s) 125, 128, 252
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 3 cut(s) 498, 569, 589
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 2 cut(s) 569, 589
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 3 cut(s) 112, 115, 264
BccI CCATC 2 cut(s) 188, 227
BciT130I CCWGG 2 cut(s) 163, 243
BciVI GTATCC 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 17
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 3 cut(s) 126, 129, 253
BlsI GCNGC 3 cut(s) 127, 130, 254
Bme1390I CCNGG 2 cut(s) 163, 243
Bme18I GGWCC 2 cut(s) 569, 589
BmgT120I GGNCC 3 cut(s) 498, 569, 589
BmiI GGNNCC 3 cut(s) 240, 355, 570
BmrFI CCNGG 2 cut(s) 163, 243
BmsI GCATC 2 cut(s) 352, 487
BsaAI YACGTR 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 162, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 500, 517
BseBI CCWGG 2 cut(s) 163, 243
BseDI CCNNGG 2 cut(s) 162, 501
BseGI GGATG 2 cut(s) 343, 478
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 3 cut(s) 167, 198, 366
BseNI ACTGG 2 cut(s) 500, 517
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 112, 115, 264
BseYI CCCAGC 2 cut(s) 58, 110
BshFI GGCC 2 cut(s) 464, 499
BsiHKAI GWGCWC 1 cut(s) 205
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 420
BsnI GGCC 2 cut(s) 464, 499
Bsp1286I GDGCHC 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 76
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 464, 499
BspCNI CTCAG 3 cut(s) 166, 197, 367
BspLI GGNNCC 3 cut(s) 240, 355, 570
BspPI GGATC 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 76
BsrI ACTGG 2 cut(s) 500, 517
BssECI CCNNGG 2 cut(s) 162, 501
BssMI GATC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 163, 243
Bst4CI ACNGT 1 cut(s) 586
BstAPI GCANNNNNTGC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 153, 184, 375
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 343, 478
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 4 cut(s) 64, 134, 302, 461
BstNI CCWGG 2 cut(s) 163, 243
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 161, 241
BstV1I GCAGC 3 cut(s) 112, 115, 264
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 464, 499
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 343, 478
BtsIMutI CAGTG 1 cut(s) 591
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 498, 569, 589
Csp6I GTAC 1 cut(s) 77
CviAII CATG 2 cut(s) 68, 620
CviJI RGCY 8 cut(s) 74, 88, 114, 145, 323, 464, 499, 605
CviKI_1 RGCY 8 cut(s) 74, 88, 114, 145, 323, 464, 499, 605
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 3 cut(s) 153, 184, 375
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 569, 589
Eco47III AGCGCT 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 161, 241
EcoT14I CCWWGG 1 cut(s) 501
EcoT22I ATGCAT 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 2 cut(s) 71, 623
FaiI YATR 5 cut(s) 65, 69, 265, 423, 621
FaqI GGGAC 1 cut(s) 420
FatI CATG 2 cut(s) 67, 619
Fnu4HI GCNGC 3 cut(s) 126, 129, 253
FokI GGATG 2 cut(s) 330, 465
Fsp4HI GCNGC 3 cut(s) 126, 129, 253
GlaI GCGC 1 cut(s) 15
GluI GCNGC 3 cut(s) 126, 129, 253
GsaI CCCAGC 2 cut(s) 62, 114
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 2 cut(s) 464, 499
HhaI GCGC 1 cut(s) 16
Hin1II CATG 2 cut(s) 71, 623
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 1 cut(s) 379
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 79, 370, 589
Hpy188I TCNGA 2 cut(s) 156, 291
Hpy188III TCNNGA 4 cut(s) 172, 284, 482, 538
Hpy8I GTNNAC 3 cut(s) 79, 370, 589
HpyAV CCTTC 3 cut(s) 94, 608, 634
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 67, 296, 305, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 134, 302, 461
HpyF3I CTNAG 3 cut(s) 153, 184, 375
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 2 cut(s) 71, 623
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 3 cut(s) 112, 115, 264
LweI GCATC 2 cut(s) 352, 487
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 506
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 2 cut(s) 16, 514
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 5 cut(s) 191, 333, 450, 527, 608
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 4 cut(s) 78, 191, 411, 588
Mph1103I ATGCAT 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 163, 243
MvaI CCWGG 2 cut(s) 163, 243
MwoI GCNNNNNNNGC 4 cut(s) 64, 134, 302, 461
NdeII GATC 1 cut(s) 286
NlaIII CATG 2 cut(s) 71, 623
NlaIV GGNNCC 3 cut(s) 240, 355, 570
NmuCI GTSAC 1 cut(s) 506
NsiI ATGCAT 1 cut(s) 69
NspI RCATGY 1 cut(s) 623
PceI AGGCCT 1 cut(s) 464
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 3 cut(s) 127, 130, 254
Ppu21I YACGTR 1 cut(s) 43
Psp6I CCWGG 2 cut(s) 161, 241
PspFI CCCAGC 2 cut(s) 58, 110
PspGI CCWGG 2 cut(s) 161, 241
PspN4I GGNNCC 3 cut(s) 240, 355, 570
PspPI GGNCC 3 cut(s) 498, 569, 589
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SatI GCNGC 3 cut(s) 126, 129, 253
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 3 cut(s) 498, 569, 589
ScrFI CCNGG 2 cut(s) 163, 243
SduI GDGCHC 1 cut(s) 205
SfaNI GCATC 2 cut(s) 352, 487
SinI GGWCC 2 cut(s) 569, 589
Sse9I AATT 5 cut(s) 191, 333, 450, 527, 608
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 1 cut(s) 255
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 2 cut(s) 161, 241
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 537
TasI AATT 5 cut(s) 191, 333, 450, 527, 608
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 1 cut(s) 379
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 3 cut(s) 125, 128, 252
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 6 cut(s) 11, 17, 84, 213, 315, 503
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 569, 589
XagI CCTNNNNNAGG 1 cut(s) 246
XceI RCATGY 1 cut(s) 623
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.