Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006888

Physical Location & Seq

Genomic Coordinates Forward (+)

67576480 .. 67580312

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0547900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGGGAGAGTGGGGTGGTGGTGATGATGTTTAGCGATGAGGAGCTGAGCGAGATGAGCGGGGTGAAGAGAGGGGTGGACCATATTGAGGTCACGTGCGGCTGTACCAGCCACAGATATGGTGATGCTGTTGGGAGGCTTAGGGTTTTCATGAATGGTGAACTGGAAATCACATGTGAATGCACCCCTGGCTGTCAGGAAGGCACATTGAGTCCCTCATTATTTGAGAAGCATTCTGGAAGAGAGACAGCTAGGAAATGGAAAAATAATGTTTGGGTCATTGTTAATGGGAAGAAGGTTCCATTGTGTAAAACAGTGCTACTCAAATACCACAATGAGGCATCAAAGAATGCTAATGGGTCCCAAAGATCCCAAAATGGACGAGCTTCTCACCGTGATGAATTTGTTTGTTGTACAAGATGCAACAAGGAGCGCAGGTTTCGTCTCCGGACAAAGGAAGAATGCCGAGTTCACCATGATGCTGTGGCTGATGTGAATTGGAAATGTGCTGATCTGCCATATGACAAAATAACTTGTGATGACGAGGAAGAAAGAGCAAGTCGTAGGGTATATAGAGGCTGCAGCCGTAAACCAACATGCCAAGGCTGCACTTCTTGTGTATGCTTTGGCTGTGAAATTTGTCGTTTCTCAGATTGCAGCTGCCAAACTTGCACCGACTTCACAAGGAATGCTAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

233

Amino Acids

26.35

Weight (kDa)

8.31

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	19 - 111	3.3e-43	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	131 - 228	1.8e-44	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04690 AT2G04690 AT2G04690 AT2G04690 AT2G04690 AT2G04690
fragaria_vesca	FvH4_6g50030 FvH4_6g50030 FvH4_6g50030 FvH4_6g50030 FvH4_6g50030
malus_domestica	MD17G1040700.v1.1
prunus_persica	Prupe.3G278300_v2.0.a1
pyrus_communis	pycom17g03650
rosa_chinensis	RchiOBHm_Chr2g0170291
rosa_laevigata	RLG00000021944
rosa_multiflora	Rmu_sc0012445.1_g000002 Rmu_sc0012468.1_g000030
rosa_roxburghii	Rroxscaffold_2G00081460
rosa_rugosa	Rorug02G0547900 Rorug02G0548000
rosa_samantha	Rh2AG619300 Rh2BG630200 Rh2CG600300 Rh2DG643100
rosa_wichuraiana	Rw2G051300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AccBSI	CCGCTC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	2 cut(s)	60, 99
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	401, 636
AcvI	CACGTG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	106, 415
AfiI	CCNNNNNNNGG	3 cut(s)	88, 337, 454
AflIII	ACRYGT	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	4 cut(s)	46, 251, 386, 660
AluI	AGCT	4 cut(s)	46, 251, 386, 660
Alw26I	GTCTC	2 cut(s)	239, 449
AlwI	GGATC	1 cut(s)	363
Aor13HI	TCCGGA	1 cut(s)	447
ApeKI	GCWGC	5 cut(s)	579, 582, 606, 657, 660
ApoI	RAATTY	2 cut(s)	401, 636
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	79, 360
AsuHPI	GGTGA	6 cut(s)	34, 76, 134, 170, 383, 464
AvaII	GGWCC	2 cut(s)	79, 360
BbrPI	CACGTG	1 cut(s)	96
BbvI	GCAGC	5 cut(s)	566, 593, 594, 647, 669
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	239, 449
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	580
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	6 cut(s)	100, 580, 583, 607, 658, 661
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	6 cut(s)	101, 581, 584, 608, 659, 662
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	79, 360
BmgT120I	GGNCC	2 cut(s)	79, 360
BmiI	GGNNCC	3 cut(s)	300, 361, 362
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	4 cut(s)	115, 350, 410, 469
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu1102I	GCTNAGC	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	187, 601
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 337, 454
Bse1I	ACTGG	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	187, 601
BseLI	CCNNNNNNNGG	3 cut(s)	88, 337, 454
BseMII	CTCAG	2 cut(s)	38, 663
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	5 cut(s)	566, 593, 594, 647, 669
BsgI	GTGCAG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	448
BslFI	GGGAC	2 cut(s)	198, 346
BslI	CCNNNNNNNGG	3 cut(s)	88, 337, 454
BsmAI	GTCTC	2 cut(s)	239, 449
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	2 cut(s)	198, 346
BsmI	GAATGC	5 cut(s)	185, 232, 355, 467, 694
Bsp13I	TCCGGA	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	368, 511
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	2 cut(s)	60, 99
BspCNI	CTCAG	2 cut(s)	39, 662
BspEI	TCCGGA	1 cut(s)	447
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	300, 361, 362
BspMAI	CTGCAG	1 cut(s)	584
BspMI	ACCTGC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	187, 601
BssMI	GATC	2 cut(s)	368, 511
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	316, 395
Bst6I	CTCTTC	2 cut(s)	62, 235
BstAUI	TGTACA	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	47, 140, 649
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	371, 514
BstMAI	GTCTC	2 cut(s)	239, 449
BstMBI	GATC	2 cut(s)	368, 511
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 108, 189, 606, 669
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	177, 600
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	580
BstV1I	GCAGC	5 cut(s)	566, 593, 594, 647, 669
BstX2I	RGATCY	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	426
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	79, 360
Csp6I	GTAC	2 cut(s)	105, 414
CviAII	CATG	5 cut(s)	151, 174, 476, 597, 699
CviQI	GTAC	2 cut(s)	105, 414
DdeI	CTNAG	3 cut(s)	47, 140, 649
DpnI	GATC	2 cut(s)	370, 513
DpnII	GATC	2 cut(s)	368, 511
Eam1104I	CTCTTC	2 cut(s)	62, 235
EarI	CTCTTC	2 cut(s)	62, 235
Eco130I	CCWWGG	1 cut(s)	601
Eco47I	GGWCC	2 cut(s)	79, 360
Eco72I	CACGTG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	601
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	5 cut(s)	154, 177, 479, 600, 702
FaqI	GGGAC	2 cut(s)	198, 346
FatI	CATG	5 cut(s)	150, 173, 475, 596, 698
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	6 cut(s)	100, 580, 583, 607, 658, 661
Fsp4HI	GCNGC	6 cut(s)	100, 580, 583, 607, 658, 661
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	6 cut(s)	100, 580, 583, 607, 658, 661
HapII	CCGG	1 cut(s)	448
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	5 cut(s)	154, 177, 479, 600, 702
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	6 cut(s)	34, 76, 134, 170, 383, 464
Hpy166II	GTNNAC	4 cut(s)	79, 161, 472, 590
Hpy188I	TCNGA	1 cut(s)	652
Hpy188III	TCNNGA	4 cut(s)	151, 197, 237, 448
Hpy8I	GTNNAC	4 cut(s)	79, 161, 472, 590
HpyAV	CCTTC	2 cut(s)	194, 289
HpyCH4III	ACNGT	2 cut(s)	316, 395
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	6 cut(s)	183, 423, 582, 609, 657, 672
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 108, 189, 606, 669
HpyF3I	CTNAG	3 cut(s)	47, 140, 649
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	5 cut(s)	154, 177, 479, 600, 702
HspAI	GCGC	1 cut(s)	433
KflI	GGGWCCC	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	368, 511
LmnI	GCTCC	2 cut(s)	43, 430
LpnPI	CCDG	8 cut(s)	121, 149, 174, 182, 201, 222, 421, 461
Lsp1109I	GCAGC	5 cut(s)	566, 593, 594, 647, 669
LweI	GCATC	4 cut(s)	115, 350, 410, 469
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	370, 513
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	2 cut(s)	368, 511
MboII	GAAGA	5 cut(s)	79, 252, 304, 470, 560
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	3 cut(s)	401, 496, 636
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	34, 65, 82, 129, 226, 331, 538, 569
MroI	TCCGGA	1 cut(s)	447
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	4 cut(s)	117, 178, 396, 477
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	5 cut(s)	185, 232, 355, 467, 694
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	57, 108, 189, 606, 669
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	2 cut(s)	368, 511
NlaIII	CATG	5 cut(s)	154, 177, 479, 600, 702
NlaIV	GGNNCC	3 cut(s)	300, 361, 362
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	2 cut(s)	177, 600
PagI	TCATGA	1 cut(s)	150
PciI	ACATGT	1 cut(s)	173
PctI	GAATGC	5 cut(s)	185, 232, 355, 467, 694
PkrI	GCNGC	6 cut(s)	101, 581, 584, 608, 659, 662
PleI	GAGTC	1 cut(s)	219
PmaCI	CACGTG	1 cut(s)	96
PmlI	CACGTG	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	219
Ppu21I	YACGTR	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	360
PscI	ACATGT	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	300, 361, 362
PspPI	GGNCC	2 cut(s)	79, 360
PspPPI	RGGWCCY	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	660
RsaI	GTAC	2 cut(s)	106, 415
RsaNI	GTAC	2 cut(s)	105, 414
RseI	CAYNNNNRTG	4 cut(s)	117, 178, 396, 477
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	6 cut(s)	100, 580, 583, 607, 658, 661
Sau3AI	GATC	2 cut(s)	368, 511
Sau96I	GGNCC	2 cut(s)	79, 360
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	8 cut(s)	48, 93, 98, 253, 300, 388, 440, 662
SfaNI	GCATC	4 cut(s)	115, 350, 410, 469
SfcI	CTRYAG	1 cut(s)	580
SinI	GGWCC	2 cut(s)	79, 360
SmiMI	CAYNNNNRTG	4 cut(s)	117, 178, 396, 477
Sse9I	AATT	3 cut(s)	401, 496, 636
SsiI	CCGC	2 cut(s)	60, 99
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	316, 395
TaiI	ACGT	1 cut(s)	98
TasI	AATT	3 cut(s)	401, 496, 636
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	5 cut(s)	579, 582, 606, 657, 660
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	139, 167, 414
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	79, 360
XapI	RAATTY	2 cut(s)	401, 636
XceI	RCATGY	2 cut(s)	177, 600
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.