MD17G1040700.v1.1

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0006888
Physical Location & Seq
Reverse (-)
2961690 .. 2964208
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1040700.v1.1.491

Sequence Viewer

Length: 780 bp
ATGTCCGTTGGCGGTCGGTCAGCCCGTAAGATTACGGGTATAAAATGCACATGCCCGTACAGTTTTACGCTCATCTCCTTCTTTCCCTCTCTCTGCACAAAGACCACGACAAAAAACAGACAGAGTCCGATGACGACGACGACGATCAAAGGGCTTGTTCACTTCGCGTTCGCAGTCTACTTGGTTTCTCTACCGTCGGGTATCCAACTGCCTGTGGATGGGCGGGTTCTCTTGCTGAAGAAACCCGACCCGGAAAATGCTTCCGCCACTGCTCGCTGGTTGGTCGCTCAGAATTCCTGGGGCGTCTTGAATACTATCTCAAGTGAATTGGAAGGAGCACCCTTCGGGAATGTGGTTTCATTTAGCGATGGAGAACCTGGAAAAGGCAGTGGTATCCCTTACTTCTACTTGACAACTCTTGATCCGACTGCAAGAAATGCACTGAAAGATCCAAGAGCTTCGTTGACAATTAGCGAGCATCCTGTTGGAACCTGTGGCAAGACGGACCCAGAGAATCCCACTTGTGCAAAGCTTACACTTAACGGGAAGCTGAAGCTTGCGGATTCCAAAGAAACAGAATTTGCTATAAGTGCCTTGTTCACAAAGCATCCGGAGATGAAGGACTGGCCCAAGGGTCACAACTTCCAGTTCTTCAAATTAGACATCGAGCATATCTTTCTGATCGATTGGTTTGGCGGTCCAAAACCTCTCACGGTCGATCAGTACCTTCATCCCAAAACGACAGAGAACGTCTGGATTCGAGGATTACTCGTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

260

Amino Acids

28.45

Weight (kDa)

9.03

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CREG_beta-barrel PF13883 82 - 243 4e-60 CREG, beta-barrel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 610
AciI CCGC 5 cut(s) 12, 223, 264, 560, 696
AclWI GGATC 2 cut(s) 416, 443
AcsI RAATTY 2 cut(s) 292, 578
AcuI CTGAAG 2 cut(s) 257, 572
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 59, 725
AfiI CCNNNNNNNGG 2 cut(s) 218, 383
AgsI TTSAA 2 cut(s) 310, 655
AjnI CCWGG 2 cut(s) 296, 376
AluBI AGCT 4 cut(s) 458, 532, 550, 556
AluI AGCT 4 cut(s) 458, 532, 550, 556
Alw21I GWGCWC 1 cut(s) 340
AlwI GGATC 2 cut(s) 416, 443
Aor13HI TCCGGA 1 cut(s) 610
AoxI GGCC 1 cut(s) 626
ApoI RAATTY 2 cut(s) 292, 578
AspS9I GGNCC 3 cut(s) 505, 627, 698
AsuC2I CCSGG 1 cut(s) 251
AvaII GGWCC 2 cut(s) 505, 698
BauI CACGAG 1 cut(s) 770
Bbv12I GWGCWC 1 cut(s) 340
BccI CCATC 2 cut(s) 212, 362
BciT130I CCWGG 2 cut(s) 298, 378
BciVI GTATCC 2 cut(s) 212, 404
BcnI CCSGG 1 cut(s) 251
BfuI GTATCC 2 cut(s) 212, 404
Bme1390I CCNGG 3 cut(s) 251, 298, 378
Bme18I GGWCC 2 cut(s) 505, 698
BmgT120I GGNCC 3 cut(s) 505, 627, 698
BmiI GGNNCC 2 cut(s) 490, 507
BmrFI CCNGG 3 cut(s) 251, 298, 378
BmsI GCATC 2 cut(s) 487, 616
BplI GAGNNNNNCTC 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 297, 630
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 383
Bse1I ACTGG 2 cut(s) 629, 646
BseAI TCCGGA 1 cut(s) 610
BseBI CCWGG 2 cut(s) 298, 378
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 297, 630
BseGI GGATG 4 cut(s) 223, 478, 607, 730
BseLI CCNNNNNNNGG 2 cut(s) 218, 383
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 629, 646
BsgI GTGCAG 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 2 cut(s) 16, 717
BshFI GGCC 1 cut(s) 628
BshVI ATCGAT 1 cut(s) 684
BsiEI CGRYCG 2 cut(s) 16, 717
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 2 cut(s) 251, 611
BslI CCNNNNNNNGG 2 cut(s) 218, 383
BsnI GGCC 1 cut(s) 628
Bsp1286I GDGCHC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 6 cut(s) 144, 421, 448, 681, 718, 774
BspACI CCGC 5 cut(s) 12, 223, 264, 560, 696
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 1 cut(s) 301
BspDI ATCGAT 1 cut(s) 684
BspEI TCCGGA 1 cut(s) 610
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 490, 507
BspPI GGATC 2 cut(s) 416, 443
BsrI ACTGG 2 cut(s) 629, 646
BssECI CCNNGG 2 cut(s) 297, 630
BssMI GATC 6 cut(s) 144, 421, 448, 681, 718, 774
BssNI GRCGYC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 630
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 2 cut(s) 298, 378
Bst4CI ACNGT 3 cut(s) 62, 195, 715
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 274, 476, 558
BstDEI CTNAG 1 cut(s) 288
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 4 cut(s) 223, 478, 607, 730
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 6 cut(s) 147, 424, 451, 684, 721, 777
BstMBI GATC 6 cut(s) 144, 421, 448, 681, 718, 774
BstMCI CGRYCG 2 cut(s) 16, 717
BstMWI GCNNNNNNNGC 2 cut(s) 437, 590
BstNI CCWGG 2 cut(s) 298, 378
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 3 cut(s) 249, 296, 376
BstUI CGCG 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 684
BsuI GTATCC 2 cut(s) 212, 404
BsuRI GGCC 1 cut(s) 628
BsuTUI ATCGAT 1 cut(s) 684
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 4 cut(s) 223, 478, 607, 730
BtsI GCAGTG 2 cut(s) 267, 394
BtsIMutI CAGTG 3 cut(s) 267, 394, 440
Cac8I GCNNGC 3 cut(s) 274, 476, 558
Cfr13I GGNCC 3 cut(s) 505, 627, 698
ClaI ATCGAT 1 cut(s) 684
CseI GACGC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 58, 724
CviAII CATG 1 cut(s) 51
CviJI RGCY 7 cut(s) 23, 154, 458, 532, 550, 556, 628
CviKI_1 RGCY 7 cut(s) 23, 154, 458, 532, 550, 556, 628
CviQI GTAC 2 cut(s) 58, 724
DdeI CTNAG 1 cut(s) 288
DpnI GATC 6 cut(s) 146, 423, 450, 683, 720, 776
DpnII GATC 6 cut(s) 144, 421, 448, 681, 718, 774
EciI GGCGGA 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 630
Eco47I GGWCC 2 cut(s) 505, 698
Eco57I CTGAAG 2 cut(s) 257, 572
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 296, 376
EcoT14I CCWWGG 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 41, 52, 587, 672
FatI CATG 1 cut(s) 50
FauI CCCGC 1 cut(s) 216
FblI GTMKAC 1 cut(s) 177
FokI GGATG 4 cut(s) 230, 465, 594, 717
HaeIII GGCC 1 cut(s) 628
HapII CCGG 2 cut(s) 251, 611
HgaI GACGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 54
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HindIII AAGCTT 2 cut(s) 530, 554
HinfI GANTC 4 cut(s) 124, 514, 563, 757
HpaII CCGG 2 cut(s) 251, 611
Hpy166II GTNNAC 4 cut(s) 160, 178, 465, 600
Hpy188I TCNGA 4 cut(s) 129, 291, 426, 681
Hpy188III TCNNGA 6 cut(s) 307, 346, 419, 611, 754, 772
Hpy8I GTNNAC 4 cut(s) 160, 178, 465, 600
Hpy99I CGWCG 4 cut(s) 139, 142, 145, 199
HpyAV CCTTC 5 cut(s) 88, 326, 352, 613, 737
HpyCH4III ACNGT 3 cut(s) 62, 195, 715
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 5 cut(s) 48, 96, 431, 440, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 590
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 750
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 54
Kpn2I TCCGGA 1 cut(s) 610
Kzo9I GATC 6 cut(s) 144, 421, 448, 681, 718, 774
LmnI GCTCC 1 cut(s) 335
LweI GCATC 2 cut(s) 487, 616
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 1 cut(s) 635
MalI GATC 6 cut(s) 146, 423, 450, 683, 720, 776
MboI GATC 6 cut(s) 144, 421, 448, 681, 718, 774
MboII GAAGA 2 cut(s) 250, 643
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 5 cut(s) 292, 326, 468, 578, 656
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 3 cut(s) 229, 449, 466
MnlI CCTC 3 cut(s) 97, 717, 755
MroI TCCGGA 1 cut(s) 610
MseI TTAA 1 cut(s) 540
MspI CCGG 2 cut(s) 251, 611
MspR9I CCNGG 3 cut(s) 251, 298, 378
MvaI CCWGG 2 cut(s) 298, 378
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 437, 590
NciI CCSGG 1 cut(s) 251
NdeII GATC 6 cut(s) 144, 421, 448, 681, 718, 774
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 2 cut(s) 490, 507
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 1 cut(s) 54
PcsI WCGNNNNNNNCGW 2 cut(s) 22, 140
PfeI GAWTC 3 cut(s) 514, 563, 757
PflFI GACNNNGTC 1 cut(s) 123
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 296, 376
PspGI CCWGG 2 cut(s) 296, 376
PspN4I GGNNCC 2 cut(s) 490, 507
PspPI GGNCC 3 cut(s) 505, 627, 698
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 123
RsaI GTAC 2 cut(s) 59, 725
RsaNI GTAC 2 cut(s) 58, 724
SaqAI TTAA 1 cut(s) 540
Sau3AI GATC 6 cut(s) 144, 421, 448, 681, 718, 774
Sau96I GGNCC 3 cut(s) 505, 627, 698
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 3 cut(s) 251, 298, 378
SduI GDGCHC 1 cut(s) 340
SetI ASST 9 cut(s) 379, 460, 494, 534, 552, 558, 709, 729, 753
SfaNI GCATC 2 cut(s) 487, 616
SinI GGWCC 2 cut(s) 505, 698
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 5 cut(s) 292, 326, 468, 578, 656
SsiI CCGC 5 cut(s) 12, 223, 264, 560, 696
StyD4I CCNGG 3 cut(s) 249, 296, 376
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 3 cut(s) 62, 195, 715
TaiI ACGT 1 cut(s) 753
TaqI TCGA 4 cut(s) 666, 684, 717, 760
TaqII GACCGA 1 cut(s) 6
TasI AATT 5 cut(s) 292, 326, 468, 578, 656
TfiI GAWTC 3 cut(s) 514, 563, 757
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 3 cut(s) 274, 394, 447
TseFI GTSAC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 3 cut(s) 348, 632, 719
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 274, 394, 447
Tth111I GACNNNGTC 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 505, 698
XagI CCTNNNNNAGG 1 cut(s) 381
XapI RAATTY 2 cut(s) 292, 578
XceI RCATGY 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.