AT2G06005

TMEM192 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007340
Physical Location & Seq
Forward (+)
2332317 .. 2336257
3941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06005.4

Sequence Viewer

Length: 1068 bp
ATGTCAACGGAGAGACGTGCTTCGTCGAATCCAATGACCAACGAAGAGAACGCTATGTTCCTTGATATATTGCATGAAGCACCATTATTTGGTCACAGGAAATCTAGAAGCCTTGTTGGAAGTTACCTCTATATGCTTCTATTGGCAGGTTATGCTATTTTAGCTGCTGGTGCTCCTTGGATGTTTCACCGAGTCCAACAGTTGACCCCTTCATTGCTCTGCTGCTGCGATGTTGCGCTTTTGGTTGTCACAGGTGTCTTTCAACAATACTTTGTTTATCAAGTCCAGAAAATACGTCTCCAGGGTTATTACAGTTTCAGTCAAAAGTTGAAGCATGTTGTTCGTCTGCCATTTGCAATCGCTGCATATGGGACTGCTGCAATGCTTCTTGTGATAGTGTGGAGGCCTCAAATCCACATTCTTTCTATTTCTTCTTTGCAACGGATCATCATGTTGGTTGAAGCAGTGGGCGCTGGCTTTTTCATGGGTTTATACATCGGTTATGTGCACCAATACAATTCCGTGAATTCCCGGCCAGATGTCTTGAAGTCATTATATTCTCCTCTTCAGCCGTCAAGTTCTATGGAAGGTTTGAGGTATTATGAAGGCCGGCTTTCTGATCAACAAACGGCTTTGTTACAATATCAACGCGAAAATCTCCATTTTCTAAGCGAGGAGATTCTGTGCTTGCAAGAGAAACTTAGCAAATATGAACAATCTGATGATGGAAGCACACCTCAGGTTGATCTCGCACATCTTTTAGCTGCTCGAGATCAAGAGCTGAGGACACTTTCAGCTGAGATGAATCAGCTTCAGTCTGAGCTACGGCTTGCTCGTTCTTTAATAGCCGAGAGAGATGCAGAGGTGCAGCGTGTCAACAGTACCAACAACCAGTATATCGAAGAAAACGAAAGACTGAGGGCAATTTTGAGTGAATGGAGCATGCGGGCAGCGAATCTTGAGAGAGCTTTGGAAGTGGAACGGATGTCGAACTCAGAACTACAGAAGGAAGTAGCAAGCACGCGTAGAAAGCAGATGCTTGAGACAACAACGTCTGAGCAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM192

Protein Analysis

355

Amino Acids

40.59

Weight (kDa)

6.47

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM192 PF14802 72 - 234 6.1e-12 TMEM192 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1051
Acc36I ACCTGC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 89
AccII CGCG 2 cut(s) 651, 1024
AciI CCGC 1 cut(s) 946
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 1 cut(s) 533
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 2 cut(s) 551, 797
AfaI GTAC 1 cut(s) 883
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 1022
AgsI TTSAA 4 cut(s) 263, 331, 461, 547
AjiI CACGTC 1 cut(s) 17
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 7 cut(s) 164, 764, 781, 797, 811, 823, 968
AluI AGCT 7 cut(s) 164, 764, 781, 797, 811, 823, 968
Alw21I GWGCWC 2 cut(s) 175, 510
Alw26I GTCTC 3 cut(s) 7, 302, 1037
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 768
AoxI GGCC 3 cut(s) 404, 533, 607
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 8 cut(s) 164, 222, 225, 362, 377, 764, 868, 950
ApoI RAATTY 1 cut(s) 526
AspLEI GCGC 2 cut(s) 238, 473
AsuC2I CCSGG 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 768
AxyI CCTNAGG 1 cut(s) 738
BaeGI GKGCMC 1 cut(s) 510
Bbv12I GWGCWC 2 cut(s) 175, 510
BbvCI CCTCAGC 1 cut(s) 782
BbvI GCAGC 8 cut(s) 151, 209, 212, 349, 364, 751, 880, 962
BccI CCATC 1 cut(s) 719
BceAI ACGGC 3 cut(s) 556, 645, 842
BcgI CGANNNNNNTGC 4 cut(s) 323, 357, 839, 873
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 532
BcoDI GTCTC 3 cut(s) 7, 302, 1037
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 1001
BfoI RGCGCY 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 8 cut(s) 165, 223, 226, 363, 378, 765, 869, 951
BlsI GCNGC 8 cut(s) 166, 224, 227, 364, 379, 766, 870, 952
Bme1390I CCNGG 2 cut(s) 302, 532
BmeT110I CYCGRG 1 cut(s) 768
BmgBI CACGTC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 302, 532
BmsI GCATC 2 cut(s) 847, 1026
BpmI CTGGAG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 782
BpuEI CTTGAG 2 cut(s) 980, 1061
BpuMI CCSGG 1 cut(s) 532
BsaJI CCNNGG 2 cut(s) 176, 301
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 609
Bse1I ACTGG 1 cut(s) 892
Bse21I CCTNAGG 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 212, 387
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 176, 301
BseGI GGATG 2 cut(s) 186, 990
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 2 cut(s) 212, 387
BseMII CTCAG 7 cut(s) 752, 773, 789, 810, 908, 1008, 1047
BseNI ACTGG 1 cut(s) 892
BseRI GAGGAG 2 cut(s) 552, 689
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 8 cut(s) 151, 209, 212, 349, 364, 751, 880, 962
BsgI GTGCAG 1 cut(s) 887
Bsh1236I CGCG 2 cut(s) 651, 1024
BshFI GGCC 3 cut(s) 406, 535, 609
BsiHKAI GWGCWC 2 cut(s) 175, 510
BsiHKCI CYCGRG 1 cut(s) 768
BsiSI CCGG 2 cut(s) 532, 610
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 3 cut(s) 7, 302, 1037
BsmBI CGTCTC 2 cut(s) 7, 302
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 3 cut(s) 406, 535, 609
BsoBI CYCGRG 1 cut(s) 768
Bsp1286I GDGCHC 2 cut(s) 175, 510
Bsp143I GATC 4 cut(s) 444, 619, 745, 772
BspACI CCGC 1 cut(s) 946
BspANI GGCC 3 cut(s) 406, 535, 609
BspCNI CTCAG 7 cut(s) 751, 774, 790, 811, 909, 1007, 1048
BspFNI CGCG 2 cut(s) 651, 1024
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 212, 387
BsrFI RCCGGY 1 cut(s) 609
BsrI ACTGG 1 cut(s) 892
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 2 cut(s) 176, 301
BssMI GATC 4 cut(s) 444, 619, 745, 772
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 201, 314, 881
Bst6I CTCTTC 2 cut(s) 39, 570
BstAPI GCANNNNNTGC 2 cut(s) 152, 362
BstC8I GCNNGC 8 cut(s) 475, 611, 689, 831, 944, 948, 1018, 1022
BstDEI CTNAG 9 cut(s) 668, 701, 738, 782, 798, 819, 917, 994, 1056
BstF5I GGATG 2 cut(s) 186, 990
BstFNI CGCG 2 cut(s) 651, 1024
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 2 cut(s) 238, 473
BstKTI GATC 4 cut(s) 447, 622, 748, 775
BstMAI GTCTC 3 cut(s) 7, 302, 1037
BstMBI GATC 4 cut(s) 444, 619, 745, 772
BstMWI GCNNNNNNNGC 6 cut(s) 152, 161, 170, 362, 470, 1030
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 2 cut(s) 338, 946
BstSCI CCNGG 2 cut(s) 300, 530
BstSFI CTRYAG 1 cut(s) 1001
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 2 cut(s) 651, 1024
BstV1I GCAGC 8 cut(s) 151, 209, 212, 349, 364, 751, 880, 962
Bsu36I CCTNAGG 1 cut(s) 738
BsuRI GGCC 3 cut(s) 406, 535, 609
BtgZI GCGATG 1 cut(s) 243
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 2 cut(s) 186, 990
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 8 cut(s) 475, 611, 689, 831, 944, 948, 1018, 1022
CfoI GCGC 2 cut(s) 238, 473
Cfr10I RCCGGY 1 cut(s) 609
Csp6I GTAC 1 cut(s) 882
CviAII CATG 5 cut(s) 74, 335, 451, 484, 943
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 9 cut(s) 668, 701, 738, 782, 798, 819, 917, 994, 1056
DpnI GATC 4 cut(s) 446, 621, 747, 774
DpnII GATC 4 cut(s) 444, 619, 745, 772
DrdI GACNNNNNNGTC 1 cut(s) 1051
DseDI GACNNNNNNGTC 1 cut(s) 1051
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 2 cut(s) 39, 570
EarI CTCTTC 2 cut(s) 39, 570
Eco130I CCWWGG 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 551, 797
Eco81I CCTNAGG 1 cut(s) 738
Eco88I CYCGRG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
Esp3I CGTCTC 2 cut(s) 7, 302
FaeI CATG 5 cut(s) 77, 338, 454, 487, 946
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 684, 716
FaqI GGGAC 1 cut(s) 385
FatI CATG 5 cut(s) 73, 334, 450, 483, 942
FauI CCCGC 1 cut(s) 939
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 8 cut(s) 165, 223, 226, 363, 378, 765, 869, 951
FokI GGATG 2 cut(s) 193, 997
Fsp4HI GCNGC 8 cut(s) 165, 223, 226, 363, 378, 765, 869, 951
FspBI CTAG 1 cut(s) 105
GlaI GCGC 2 cut(s) 237, 472
GluI GCNGC 8 cut(s) 165, 223, 226, 363, 378, 765, 869, 951
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 3 cut(s) 406, 535, 609
HapII CCGG 2 cut(s) 532, 610
HhaI GCGC 2 cut(s) 238, 473
Hin1II CATG 5 cut(s) 77, 338, 454, 487, 946
Hin6I GCGC 2 cut(s) 236, 471
HinP1I GCGC 2 cut(s) 236, 471
HincII GTYRAC 3 cut(s) 6, 204, 877
HindII GTYRAC 3 cut(s) 6, 204, 877
HinfI GANTC 5 cut(s) 28, 192, 679, 805, 955
HpaII CCGG 2 cut(s) 532, 610
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 4 cut(s) 6, 204, 508, 877
Hpy188I TCNGA 5 cut(s) 619, 721, 820, 997, 1057
Hpy188III TCNNGA 6 cut(s) 105, 286, 544, 770, 776, 959
Hpy8I GTNNAC 4 cut(s) 6, 204, 508, 877
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 4 cut(s) 219, 581, 599, 1000
HpyCH4III ACNGT 3 cut(s) 201, 314, 881
HpyCH4IV ACGT 3 cut(s) 16, 295, 1052
HpyCH4V TGCA 9 cut(s) 73, 356, 365, 380, 439, 508, 691, 860, 868
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 161, 170, 362, 470, 1030
HpyF3I CTNAG 9 cut(s) 668, 701, 738, 782, 798, 819, 917, 994, 1056
HpySE526I ACGT 3 cut(s) 16, 295, 1052
Hsp92II CATG 5 cut(s) 77, 338, 454, 487, 946
HspAI GCGC 2 cut(s) 236, 471
KroI GCCGGC 1 cut(s) 609
KroNI GCCGGC 1 cut(s) 611
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 4 cut(s) 444, 619, 745, 772
LmnI GCTCC 2 cut(s) 178, 939
Lsp1109I GCAGC 8 cut(s) 151, 209, 212, 349, 364, 751, 880, 962
LweI GCATC 2 cut(s) 847, 1026
MaeI CTAG 1 cut(s) 105
MaeII ACGT 3 cut(s) 16, 295, 1052
MaeIII GTNAC 4 cut(s) 92, 122, 247, 636
MalI GATC 4 cut(s) 446, 621, 747, 774
MboI GATC 4 cut(s) 444, 619, 745, 772
MboII GAAGA 4 cut(s) 56, 423, 557, 914
MhlI GDGCHC 2 cut(s) 175, 510
MluCI AATT 3 cut(s) 517, 526, 924
MluI ACGCGT 1 cut(s) 1022
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 97, 220
MroNI GCCGGC 1 cut(s) 609
MseI TTAA 2 cut(s) 842, 1066
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 2 cut(s) 532, 610
MspR9I CCNGG 2 cut(s) 302, 532
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 2 cut(s) 651, 1024
MwoI GCNNNNNNNGC 6 cut(s) 152, 161, 170, 362, 470, 1030
NaeI GCCGGC 1 cut(s) 611
NciI CCSGG 1 cut(s) 532
NdeI CATATG 1 cut(s) 367
NdeII GATC 4 cut(s) 444, 619, 745, 772
NgoMIV GCCGGC 1 cut(s) 609
NlaIII CATG 5 cut(s) 77, 338, 454, 487, 946
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 2 cut(s) 92, 247
NspI RCATGY 2 cut(s) 338, 946
PaeI GCATGC 1 cut(s) 946
PaeR7I CTCGAG 1 cut(s) 768
PceI AGGCCT 1 cut(s) 406
PcsI WCGNNNNNNNCGW 2 cut(s) 832, 906
PdiI GCCGGC 1 cut(s) 611
PfeI GAWTC 4 cut(s) 28, 679, 805, 955
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 8 cut(s) 166, 224, 227, 364, 379, 766, 870, 952
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 842, 1066
SatI GCNGC 8 cut(s) 165, 223, 226, 363, 378, 765, 869, 951
Sau3AI GATC 4 cut(s) 444, 619, 745, 772
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 2 cut(s) 302, 532
SduI GDGCHC 2 cut(s) 175, 510
SfaNI GCATC 2 cut(s) 847, 1026
SfcI CTRYAG 1 cut(s) 1001
Sfr274I CTCGAG 1 cut(s) 768
SlaI CTCGAG 1 cut(s) 768
SmlI CTYRAG 3 cut(s) 768, 959, 1040
SmoI CTYRAG 3 cut(s) 768, 959, 1040
SphI GCATGC 1 cut(s) 946
Sse9I AATT 3 cut(s) 517, 526, 924
SseBI AGGCCT 1 cut(s) 406
SsiI CCGC 1 cut(s) 946
SspMI CTAG 1 cut(s) 105
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 300, 530
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 201, 314, 881
TaiI ACGT 3 cut(s) 19, 298, 1055
TaqI TCGA 4 cut(s) 26, 769, 900, 989
TasI AATT 3 cut(s) 517, 526, 924
TfiI GAWTC 4 cut(s) 28, 679, 805, 955
Tru1I TTAA 2 cut(s) 842, 1066
Tru9I TTAA 2 cut(s) 842, 1066
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 2 cut(s) 92, 247
TseI GCWGC 8 cut(s) 164, 222, 225, 362, 377, 764, 868, 950
Tsp45I GTSAC 2 cut(s) 92, 247
TspDTI ATGAA 6 cut(s) 90, 201, 472, 618, 726, 818
TspGWI ACGGA 4 cut(s) 23, 457, 511, 997
TspRI CASTG 1 cut(s) 471
Van91I CCANNNNNTGG 1 cut(s) 89
VneI GTGCAC 1 cut(s) 506
XapI RAATTY 1 cut(s) 526
XbaI TCTAGA 1 cut(s) 104
XceI RCATGY 2 cut(s) 338, 946
XhoI CTCGAG 1 cut(s) 768
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.