Rh2BG097800

TMEM192 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007340
Physical Location & Seq
Reverse (-)
8017989 .. 8028902
10914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG097800.1

Sequence Viewer

Length: 768 bp
ATGGCAACAGAGCGAGAGAGGCACGCTTCGATGCCCTCAACCTCACCCGAAGACGATGCACTGTTTCTGGATATAATGCACGAGGCTCCGTTGTTCGGCCACCGGAAGTCGCGAAGCCTCTTCGGAAGTGTCTTCTACTTGATCGTACTCGCCGGTTACGCTTCTGTCGCCGTCGCTTCGATGTGGATATTCAAGCCTATTCACGAATATATATCCCAAGTGCTTTGCAGCTGCAACGTTCTTCTTCTAGTTCTCACAGGCATCTTTCAGCAGTATTTGGTTTACCAGGTGCAGAAAATACGGTTACAGGGTTATTATAGCTTCAGCCAGAAGTTGAAGCATATTGTTCGCCTACCTTTTGCAGCTACTGCATATGGAACTGCTGCGATGTTACTGTTCATGGTCTGGAAACCCCACATCAATTTCCTTTCTCTACCATCAATATTGAGGGTTATTATGGTAGTTGAAGCAATATGTGCCGGAACTTTTATTAGTCTATATATTGGTTATGTTCATCAGTACAACTCATTAAATTCCCAGCCTGATGTCTTAAAGTCATTATATTCTCCTCTTCAACCCTCAAGTTCTTTGGAAGGTTTGAGGTATCATGATGTTGGTCGACTTTCTGATCAACAAATGGCTTTGTTGCAATATCAACGTGAAAATCTCCATTTTTTGAGTGAAGAGATCCTTCGATTGCAAGAGTCCTTAAGTAAATATGAACGGTCTAGTGATGGTAGTACACCTCAGGTAATTGATTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM192

Protein Analysis

255

Amino Acids

29.14

Weight (kDa)

7.12

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM192 PF14802 55 - 233 4.2e-12 TMEM192 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 619
AccII CGCG 1 cut(s) 112
AclI AACGTT 1 cut(s) 237
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 3 cut(s) 147, 521, 742
AfiI CCNNNNNNNGG 1 cut(s) 95
AflII CTTAAG 1 cut(s) 709
AgsI TTSAA 4 cut(s) 193, 337, 467, 575
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 231, 321, 365
AluI AGCT 3 cut(s) 231, 321, 365
AlwI GGATC 1 cut(s) 682
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 4 cut(s) 228, 231, 362, 383
ApoI RAATTY 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 36
AxyI CCTNAGG 1 cut(s) 747
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 57, 124
BbvI GCAGC 4 cut(s) 218, 240, 370, 374
BccI CCATC 2 cut(s) 445, 728
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 329, 363
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 1 cut(s) 628
BfaI CTAG 3 cut(s) 248, 729, 766
BfrI CTTAAG 1 cut(s) 709
BisI GCNGC 4 cut(s) 229, 232, 363, 384
BlsI GCNGC 4 cut(s) 230, 233, 364, 385
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 3 cut(s) 21, 46, 270
BpiI GAAGAC 2 cut(s) 57, 124
BpuEI CTTGAG 1 cut(s) 565
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 152
Bse21I CCTNAGG 1 cut(s) 747
BseBI CCWGG 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 761
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 4 cut(s) 218, 240, 370, 374
BseYI CCCAGC 1 cut(s) 537
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 3 cut(s) 103, 153, 480
BslI CCNNNNNNNGG 1 cut(s) 95
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 141, 628, 687
Bsp68I TCGCGA 1 cut(s) 112
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 760
BspFNI CGCG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 1 cut(s) 682
BspTI CTTAAG 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 3 cut(s) 141, 628, 687
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 4 cut(s) 63, 303, 396, 726
Bst6I CTCTTC 3 cut(s) 125, 576, 678
BstAFI CTTAAG 1 cut(s) 709
BstAPI GCANNNNNTGC 2 cut(s) 368, 476
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 747
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 3 cut(s) 144, 631, 690
BstMBI GATC 3 cut(s) 141, 628, 687
BstMWI GCNNNNNNNGC 5 cut(s) 19, 158, 167, 368, 476
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 4 cut(s) 218, 240, 370, 374
BstV2I GAAGAC 2 cut(s) 57, 124
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
Bsu36I CCTNAGG 1 cut(s) 747
BsuRI GGCC 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 59
BtuMI TCGCGA 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 3 cut(s) 146, 520, 741
CviAII CATG 2 cut(s) 400, 608
CviQI GTAC 3 cut(s) 146, 520, 741
DdeI CTNAG 1 cut(s) 747
DpnI GATC 3 cut(s) 143, 630, 689
DpnII GATC 3 cut(s) 141, 628, 687
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 125, 576, 678
EarI CTCTTC 3 cut(s) 125, 576, 678
Eco57I CTGAAG 1 cut(s) 307
Eco81I CCTNAGG 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 403, 611
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FatI CATG 2 cut(s) 399, 607
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 4 cut(s) 229, 232, 363, 384
Fsp4HI GCNGC 4 cut(s) 229, 232, 363, 384
FspBI CTAG 3 cut(s) 248, 729, 766
GluI GCNGC 4 cut(s) 229, 232, 363, 384
GsaI CCCAGC 1 cut(s) 541
HaeIII GGCC 1 cut(s) 99
HapII CCGG 3 cut(s) 103, 153, 480
Hin1II CATG 2 cut(s) 403, 611
HincII GTYRAC 1 cut(s) 620
HindII GTYRAC 1 cut(s) 620
HinfI GANTC 1 cut(s) 704
HpaII CCGG 3 cut(s) 103, 153, 480
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 3 cut(s) 283, 620, 743
Hpy188I TCNGA 2 cut(s) 125, 628
Hpy188III TCNNGA 5 cut(s) 68, 111, 203, 406, 608
Hpy8I GTNNAC 3 cut(s) 283, 620, 743
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 587, 701
HpyCH4III ACNGT 4 cut(s) 63, 303, 396, 726
HpyCH4IV ACGT 2 cut(s) 237, 658
HpyCH4V TGCA 9 cut(s) 59, 79, 228, 234, 292, 362, 371, 649, 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 158, 167, 368, 476
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 2 cut(s) 237, 658
Hsp92II CATG 2 cut(s) 403, 611
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 3 cut(s) 141, 628, 687
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 4 cut(s) 218, 240, 370, 374
LweI GCATC 3 cut(s) 21, 46, 270
MabI ACCWGGT 1 cut(s) 285
MaeI CTAG 3 cut(s) 248, 729, 766
MaeII ACGT 2 cut(s) 237, 658
MaeIII GTNAC 3 cut(s) 155, 303, 390
MalI GATC 3 cut(s) 143, 630, 689
MboI GATC 3 cut(s) 141, 628, 687
MboII GAAGA 7 cut(s) 62, 112, 124, 233, 236, 563, 695
MflI RGATCY 1 cut(s) 687
MluCI AATT 3 cut(s) 421, 532, 753
MlyI GAGTC 1 cut(s) 713
MseI TTAA 3 cut(s) 530, 551, 710
MspA1I CMGCKG 1 cut(s) 231
MspCI CTTAAG 1 cut(s) 709
MspI CCGG 3 cut(s) 103, 153, 480
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 5 cut(s) 19, 158, 167, 368, 476
NdeI CATATG 1 cut(s) 373
NdeII GATC 3 cut(s) 141, 628, 687
NlaIII CATG 2 cut(s) 403, 611
NlaIV GGNNCC 1 cut(s) 87
NruI TCGCGA 1 cut(s) 112
PagI TCATGA 1 cut(s) 607
PkrI GCNGC 4 cut(s) 230, 233, 364, 385
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 687
PvuII CAGCTG 1 cut(s) 231
RruI TCGCGA 1 cut(s) 112
RsaI GTAC 3 cut(s) 147, 521, 742
RsaNI GTAC 3 cut(s) 146, 520, 741
SalI GTCGAC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 530, 551, 710
SatI GCNGC 4 cut(s) 229, 232, 363, 384
Sau3AI GATC 3 cut(s) 141, 628, 687
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 1 cut(s) 287
SexAI ACCWGGT 1 cut(s) 285
SfaNI GCATC 3 cut(s) 21, 46, 270
SmlI CTYRAG 2 cut(s) 580, 709
SmoI CTYRAG 2 cut(s) 580, 709
Sse9I AATT 3 cut(s) 421, 532, 753
SspI AATATT 1 cut(s) 444
SspMI CTAG 3 cut(s) 248, 729, 766
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 4 cut(s) 63, 303, 396, 726
TaiI ACGT 2 cut(s) 240, 661
TaqI TCGA 4 cut(s) 29, 179, 619, 694
TasI AATT 3 cut(s) 421, 532, 753
TatI WGTACW 2 cut(s) 519, 740
Tru1I TTAA 3 cut(s) 530, 551, 710
Tru9I TTAA 3 cut(s) 530, 551, 710
TscAI CASTG 1 cut(s) 66
TseI GCWGC 4 cut(s) 228, 231, 362, 383
TspDTI ATGAA 3 cut(s) 388, 503, 735
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 709
XapI RAATTY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 619
XspI CTAG 3 cut(s) 248, 729, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.