FvH4_1g08690

TMEM192 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007340
Physical Location & Seq
Reverse (-)
4620377 .. 4623908
3532 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08690.t1

Sequence Viewer

Length: 1077 bp
ATGTCAACAGAGCGAGAGAGGCACGCTTCGCTGCCCTCAACCTCACCCGAAGACGATGCACTGTTTCTTGATATAATGCACGAGGCTCCCTTATTCGGCCACCGCAAGTCACGCAGCCTCGTCGGAAGTGTCCTCTACTTGATTCTTCTCGCCGGCTACGCTTCCCTCGCCGTCGCATCGCCGTGGATGTTCAAGGCTATTCAGAGTTACGAACCCCAGTTGCTTTGCAGCTGCAACGTTCTTCTTCTAATCCTCACAGGCATCTTTCAGCAGTATTTGGTGTACCAGGTGCAGAAGATACGGTTACAGGGTTATTATAGCTTTAGCCAGAAGTTGAAGCATATTGTTCGTCTACCTTTTGCAGCTACTGCATATGGAACTGCGGCAATGTTACTCGTCATGGTCTGGAGACCCCACATCAGTTTCCTTACTCTCCCTGCAATATTGAGGGTTATTATGGTAATTGAAGCAATATGTGCCGGATCTTTTATGAGTCTATATATTGGTTATGTTCATCAGTACAACTCATTAAATTCCCAGCCTGATGTCTTAAAGTCATTATATTCTCCTCTTCAACCCTCAAGTTCTTTGGAAGGTTTGAGGTATCATGATGTTGGTCGACTCTCTGATCAACAAATGGCTTTGTTGCAATACCAACGTGAAAACCTTCATTTTTTGAGTGAAGAGATCCTTCGATTGCAAGAGTGCTTAAGCAAATATGAACGGACTAGTGATGGCAGCACACCTCAGGTTGATCTTGCTCATCTATTGGCAGCGCGTGATCAGGAATTACGCACGCTTTCTGCTGAGATGAATCAACTTCAATCGGAGCTAGGGCTTGCTCGTTCTTTGATAGCTGAGAGGGATACTGAAATCCAGCAAGTCCGAACAACCAACAATCAGTACGTGGAGGAGAATGAAAGATTGAGAGCAATTTTAGGAGAATGGAGTTCCCGAGCAGCAAAGCTTGAACGAGCATTAGAAGCCGAGCGGATGTCCAACCTTGAACTGCAAAAGAAGATCCCAACTCACAGAAGCCACTCACAATCACAATTGTCAGCTGAACAAACCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM192

Protein Analysis

359

Amino Acids

40.75

Weight (kDa)

6.84

Isoelectric Point (pI)

58.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM192 PF14802 79 - 233 8.5e-12 TMEM192 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 991
AccI GTMKAC 2 cut(s) 352, 619
AccII CGCG 1 cut(s) 778
AciI CCGC 3 cut(s) 103, 383, 991
AclI AACGTT 1 cut(s) 237
AclWI GGATC 3 cut(s) 490, 682, 1015
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 532
AfaI GTAC 3 cut(s) 284, 521, 905
AfiI CCNNNNNNNGG 1 cut(s) 95
AflII CTTAAG 1 cut(s) 709
AgsI TTSAA 7 cut(s) 193, 337, 467, 575, 824, 971, 1007
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 7 cut(s) 231, 321, 365, 832, 857, 967, 1061
AluI AGCT 7 cut(s) 231, 321, 365, 832, 857, 967, 1061
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 3 cut(s) 490, 682, 1015
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 954
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 8 cut(s) 31, 114, 228, 231, 362, 738, 773, 959
ApoI RAATTY 1 cut(s) 532
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 778
AsuHPI GGTGA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 954
AxyI CCTNAGG 1 cut(s) 747
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 8 cut(s) 18, 126, 218, 240, 374, 750, 785, 971
BccI CCATC 1 cut(s) 728
BceAI ACGGC 2 cut(s) 155, 166
BcgI CGANNNNNNTGC 6 cut(s) 38, 72, 103, 137, 329, 363
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 859
BclI TGATCA 2 cut(s) 628, 781
BcoDI GTCTC 1 cut(s) 403
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 2 cut(s) 729, 833
BfrI CTTAAG 1 cut(s) 709
BfuI GTATCC 1 cut(s) 859
BisI GCNGC 9 cut(s) 32, 115, 229, 232, 363, 384, 739, 774, 960
BlsI GCNGC 9 cut(s) 33, 116, 230, 233, 364, 385, 740, 775, 961
Bme1390I CCNGG 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 954
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 3 cut(s) 46, 185, 270
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 565
BsaAI YACGTR 1 cut(s) 907
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 217
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 192, 999
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 3 cut(s) 761, 798, 849
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 558, 926
BseXI GCAGC 8 cut(s) 18, 126, 218, 240, 374, 750, 785, 971
BseYI CCCAGC 1 cut(s) 537
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 778
BshFI GGCC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 954
BsiSI CCGG 2 cut(s) 153, 480
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 403
BsoBI CYCGRG 1 cut(s) 954
Bsp143I GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
BspACI CCGC 3 cut(s) 103, 383, 991
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 3 cut(s) 760, 799, 850
BspFNI CGCG 1 cut(s) 778
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 3 cut(s) 490, 682, 1015
BspTI CTTAAG 1 cut(s) 709
BspTNI GGTCTC 1 cut(s) 403
BsrBI CCGCTC 1 cut(s) 991
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 63, 303
Bst6I CTCTTC 2 cut(s) 576, 678
BstAFI CTTAAG 1 cut(s) 709
BstAPI GCANNNNNTGC 2 cut(s) 368, 476
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 4 cut(s) 24, 154, 797, 840
BstDEI CTNAG 3 cut(s) 747, 807, 858
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 192, 999
BstFNI CGCG 1 cut(s) 778
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 6 cut(s) 485, 631, 690, 757, 784, 1023
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
BstMWI GCNNNNNNNGC 8 cut(s) 19, 28, 111, 158, 167, 368, 476, 983
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstUI CGCG 1 cut(s) 778
BstV1I GCAGC 8 cut(s) 18, 126, 218, 240, 374, 750, 785, 971
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 3 cut(s) 482, 687, 1020
BstYI RGATCY 3 cut(s) 482, 687, 1020
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 1 cut(s) 859
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 192, 999
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 4 cut(s) 24, 154, 797, 840
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 778
Cfr10I RCCGGY 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 3 cut(s) 283, 520, 904
CviAII CATG 2 cut(s) 400, 608
CviQI GTAC 3 cut(s) 283, 520, 904
DdeI CTNAG 3 cut(s) 747, 807, 858
DpnI GATC 6 cut(s) 484, 630, 689, 756, 783, 1022
DpnII GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 576, 678
EarI CTCTTC 2 cut(s) 576, 678
Eco31I GGTCTC 1 cut(s) 403
Eco81I CCTNAGG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 954
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 403, 611
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FatI CATG 2 cut(s) 399, 607
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 628, 781
FblI GTMKAC 2 cut(s) 352, 619
Fnu4HI GCNGC 9 cut(s) 32, 115, 229, 232, 363, 384, 739, 774, 960
FokI GGATG 2 cut(s) 199, 1006
Fsp4HI GCNGC 9 cut(s) 32, 115, 229, 232, 363, 384, 739, 774, 960
FspBI CTAG 2 cut(s) 729, 833
GlaI GCGC 1 cut(s) 777
GluI GCNGC 9 cut(s) 32, 115, 229, 232, 363, 384, 739, 774, 960
GsaI CCCAGC 1 cut(s) 541
GsuI CTGGAG 1 cut(s) 427
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 153, 480
HhaI GCGC 1 cut(s) 778
Hin1II CATG 2 cut(s) 403, 611
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 2 cut(s) 6, 620
HindII GTYRAC 2 cut(s) 6, 620
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 4 cut(s) 142, 493, 621, 814
HpaII CCGG 2 cut(s) 153, 480
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 4 cut(s) 6, 283, 353, 620
Hpy188I TCNGA 5 cut(s) 125, 204, 628, 829, 887
Hpy188III TCNNGA 5 cut(s) 68, 406, 608, 785, 954
Hpy8I GTNNAC 4 cut(s) 6, 283, 353, 620
Hpy99I CGWCG 2 cut(s) 125, 176
HpyAV CCTTC 3 cut(s) 587, 677, 701
HpyCH4III ACNGT 2 cut(s) 63, 303
HpyCH4IV ACGT 3 cut(s) 237, 658, 906
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 28, 111, 158, 167, 368, 476, 983
HpyF3I CTNAG 3 cut(s) 747, 807, 858
HpySE526I ACGT 3 cut(s) 237, 658, 906
Hsp92II CATG 2 cut(s) 403, 611
HspAI GCGC 1 cut(s) 776
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Ksp22I TGATCA 2 cut(s) 628, 781
Kzo9I GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
LmnI GCTCC 2 cut(s) 91, 829
Lsp1109I GCAGC 8 cut(s) 18, 126, 218, 240, 374, 750, 785, 971
LweI GCATC 3 cut(s) 46, 185, 270
MabI ACCWGGT 1 cut(s) 285
MaeI CTAG 2 cut(s) 729, 833
MaeII ACGT 3 cut(s) 237, 658, 906
MaeIII GTNAC 4 cut(s) 108, 206, 303, 390
MalI GATC 6 cut(s) 484, 630, 689, 756, 783, 1022
MbiI CCGCTC 1 cut(s) 991
MboI GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
MboII GAAGA 8 cut(s) 62, 137, 233, 236, 307, 563, 695, 1030
MfeI CAATTG 1 cut(s) 1052
MflI RGATCY 3 cut(s) 482, 687, 1020
MluCI AATT 5 cut(s) 462, 532, 788, 933, 1052
MlyI GAGTC 2 cut(s) 502, 615
MmeI TCCRAC 2 cut(s) 103, 1023
MroNI GCCGGC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 3 cut(s) 530, 551, 710
MslI CAYNNNNRTG 1 cut(s) 181
MspA1I CMGCKG 2 cut(s) 231, 1061
MspCI CTTAAG 1 cut(s) 709
MspI CCGG 2 cut(s) 153, 480
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 1052
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 778
MwoI GCNNNNNNNGC 8 cut(s) 19, 28, 111, 158, 167, 368, 476, 983
NaeI GCCGGC 1 cut(s) 154
NdeI CATATG 1 cut(s) 373
NdeII GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 403, 611
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 1012
NmuCI GTSAC 1 cut(s) 108
PagI TCATGA 1 cut(s) 607
PdiI GCCGGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 142, 814
PkrI GCNGC 9 cut(s) 33, 116, 230, 233, 364, 385, 740, 775, 961
PleI GAGTC 2 cut(s) 501, 615
PpsI GAGTC 2 cut(s) 501, 615
Ppu21I YACGTR 1 cut(s) 907
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 3 cut(s) 482, 687, 1020
PvuII CAGCTG 2 cut(s) 231, 1061
RsaI GTAC 3 cut(s) 284, 521, 905
RsaNI GTAC 3 cut(s) 283, 520, 904
RseI CAYNNNNRTG 1 cut(s) 181
SalI GTCGAC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 530, 551, 710
SatI GCNGC 9 cut(s) 32, 115, 229, 232, 363, 384, 739, 774, 960
Sau3AI GATC 6 cut(s) 482, 628, 687, 754, 781, 1020
SchI GAGTC 2 cut(s) 502, 615
ScrFI CCNGG 1 cut(s) 287
SexAI ACCWGGT 1 cut(s) 285
SfaNI GCATC 3 cut(s) 46, 185, 270
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 2 cut(s) 580, 709
SmoI CTYRAG 2 cut(s) 580, 709
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 5 cut(s) 462, 532, 788, 933, 1052
SsiI CCGC 3 cut(s) 103, 383, 991
SspI AATATT 1 cut(s) 444
SspMI CTAG 2 cut(s) 729, 833
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 63, 303
TaiI ACGT 3 cut(s) 240, 661, 909
TaqI TCGA 2 cut(s) 619, 694
TasI AATT 5 cut(s) 462, 532, 788, 933, 1052
TatI WGTACW 1 cut(s) 519
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 2 cut(s) 142, 814
Tru1I TTAA 3 cut(s) 530, 551, 710
Tru9I TTAA 3 cut(s) 530, 551, 710
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 8 cut(s) 31, 114, 228, 231, 362, 738, 773, 959
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 5 cut(s) 503, 659, 735, 827, 933
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 709
XapI RAATTY 1 cut(s) 532
XmiI GTMKAC 2 cut(s) 352, 619
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 2 cut(s) 729, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.