Rw2G007260

TMEM192 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007340
Physical Location & Seq
Reverse (-)
7066333 .. 7070020
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007260.1

Sequence Viewer

Length: 1071 bp
ATGGCAACAGAGCGAGAGAGGCACGCTTCGATGCCCTCAACCTCACCCGAAGACGATGCACTGTTTCTGGATATAATGCACGAGGCTCCGTTGTTCGGCCACCGGAAGTCGCGAAGCCTCTTCGGAAGTGTCTTCTACTTGATCGTACTCGCCGGTTACGCTTCTGTCGCCGTCGCTTCGATGTGGATGTTCAAGCCTATTCACGAATATATATCCCAAGTGCTTTGCAGCTGCAACGTTCTTCTTCTAGTTCTCACAGGCATCTTTCAGCAGTATTTGGTTTACCAGGTGCAGAAAATACGGTTACAGGGTTATTATAGCTTCAGCCAGAAGTTGAAGCATATTGTTCGCCTACCTTTTGCAGCTACTGCATATGGAACTGCTGCGATGTTACTGTTCATGGTCTGGAAACCCCACATCAATTTCCTTTCTCTACCATCAATATTGAGGGTTATTATGGTAGTTGAAGCAATATGTGCCGGAACTTTTATTAGTCTATATATTGGTTATGTTCATCAGTACAACTCATTAAATTCCCAGCCTGATGTCTTAAAGTCATTATATTCTCCTCTTCAACCCTCAAGTTCTTTGGAAGGTTTGAGGTATCATGATGTTGGTCGACTTTCTGATCAACAAATGGCTTTATTGCAATATCAACGTGAAAATCTCCATTTTTTGAGTGAAGAGATCCTTCGATTGCAAGAGTCCTTAAGTAAATATGAACGGTCTAGTGATGGTAGTACACCTCAGGTTGATCTTGCTCATCTATTGGCAGCACGTGATCAGGAATTACGGACGCTTTCTGCTGAGATGAATCAACTGCAGTCTGAGCTACGGCTTGCTCGTTCTTTGATAGCTGAGAGGGATACTGAAATCCAGCAAGTCCGAACAACCAACAATCAGTACGTGGAGGAGAATGAAAGATTGAGAGCTATTTTAGGAGAATGGAGTACCCGAGCAGCAAAGCTTGAACGAGCATTAGAAGCTGAGCGGATGTCCAATCTTGAACTACAAAAGAAGATCCCCACTCTCAGAAACCAACCGCAATCGTCAGCTGAACCAACCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM192

Protein Analysis

356

Amino Acids

40.71

Weight (kDa)

7.16

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM192 PF14802 54 - 233 1.1e-12 TMEM192 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 991
AccI GTMKAC 1 cut(s) 619
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 991, 1043
AclI AACGTT 1 cut(s) 237
AclWI GGATC 2 cut(s) 682, 1015
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 307
AcvI CACGTG 1 cut(s) 779
AfaI GTAC 5 cut(s) 147, 521, 742, 905, 952
AfiI CCNNNNNNNGG 1 cut(s) 95
AflII CTTAAG 1 cut(s) 709
AgsI TTSAA 6 cut(s) 193, 337, 467, 575, 971, 1007
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 9 cut(s) 231, 321, 365, 832, 857, 932, 967, 986, 1055
AluI AGCT 9 cut(s) 231, 321, 365, 832, 857, 932, 967, 986, 1055
AlwI GGATC 2 cut(s) 682, 1015
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 954
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 6 cut(s) 228, 231, 362, 383, 773, 959
ApoI RAATTY 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 954
AxyI CCTNAGG 1 cut(s) 747
BauI CACGAG 1 cut(s) 80
BbrPI CACGTG 1 cut(s) 779
BbsI GAAGAC 2 cut(s) 57, 124
BbvI GCAGC 6 cut(s) 218, 240, 370, 374, 785, 971
BccI CCATC 2 cut(s) 445, 728
BceAI ACGGC 2 cut(s) 155, 851
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 329, 363
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 859
BclI TGATCA 2 cut(s) 628, 781
BfaI CTAG 2 cut(s) 248, 729
BfmI CTRYAG 1 cut(s) 821
BfrI CTTAAG 1 cut(s) 709
BfuI GTATCC 1 cut(s) 859
BisI GCNGC 6 cut(s) 229, 232, 363, 384, 774, 960
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 6 cut(s) 230, 233, 364, 385, 775, 961
Bme1390I CCNGG 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 954
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 3 cut(s) 21, 46, 270
BpiI GAAGAC 2 cut(s) 57, 124
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 565
BsaAI YACGTR 2 cut(s) 779, 907
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 152
Bse21I CCTNAGG 1 cut(s) 747
BseBI CCWGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 192, 999
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 6 cut(s) 761, 798, 819, 849, 978, 1045
BseRI GAGGAG 2 cut(s) 558, 926
BseXI GCAGC 6 cut(s) 218, 240, 370, 374, 785, 971
BseYI CCCAGC 1 cut(s) 537
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 954
BsiSI CCGG 3 cut(s) 103, 153, 480
BslI CCNNNNNNNGG 1 cut(s) 95
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 954
Bsp143I GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp68I TCGCGA 1 cut(s) 112
BspACI CCGC 2 cut(s) 991, 1043
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 6 cut(s) 760, 799, 820, 850, 979, 1044
BspFNI CGCG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 825
BspPI GGATC 2 cut(s) 682, 1015
BspTI CTTAAG 1 cut(s) 709
BsrBI CCGCTC 1 cut(s) 991
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 4 cut(s) 63, 303, 396, 726
Bst6I CTCTTC 3 cut(s) 125, 576, 678
BstAFI CTTAAG 1 cut(s) 709
BstAPI GCANNNNNTGC 2 cut(s) 368, 476
BstBAI YACGTR 2 cut(s) 779, 907
BstC8I GCNNGC 2 cut(s) 24, 840
BstDEI CTNAG 6 cut(s) 747, 807, 828, 858, 987, 1031
BstF5I GGATG 2 cut(s) 192, 999
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 6 cut(s) 144, 631, 690, 757, 784, 1023
BstMBI GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
BstMWI GCNNNNNNNGC 7 cut(s) 19, 158, 167, 368, 476, 829, 983
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 821
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 6 cut(s) 218, 240, 370, 374, 785, 971
BstV2I GAAGAC 2 cut(s) 57, 124
BstX2I RGATCY 2 cut(s) 687, 1020
BstYI RGATCY 2 cut(s) 687, 1020
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 1 cut(s) 859
BsuRI GGCC 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 401
BtsCI GGATG 2 cut(s) 192, 999
BtsIMutI CAGTG 1 cut(s) 59
BtuMI TCGCGA 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 24, 840
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 152
CseI GACGC 1 cut(s) 805
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 5 cut(s) 146, 520, 741, 904, 951
CviAII CATG 2 cut(s) 400, 608
CviQI GTAC 5 cut(s) 146, 520, 741, 904, 951
DdeI CTNAG 6 cut(s) 747, 807, 828, 858, 987, 1031
DpnI GATC 6 cut(s) 143, 630, 689, 756, 783, 1022
DpnII GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 125, 576, 678
EarI CTCTTC 3 cut(s) 125, 576, 678
Eco57I CTGAAG 1 cut(s) 307
Eco72I CACGTG 1 cut(s) 779
Eco81I CCTNAGG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 954
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 403, 611
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FatI CATG 2 cut(s) 399, 607
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 628, 781
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 6 cut(s) 229, 232, 363, 384, 774, 960
FokI GGATG 2 cut(s) 199, 1006
Fsp4HI GCNGC 6 cut(s) 229, 232, 363, 384, 774, 960
FspBI CTAG 2 cut(s) 248, 729
GluI GCNGC 6 cut(s) 229, 232, 363, 384, 774, 960
GsaI CCCAGC 1 cut(s) 541
HaeIII GGCC 1 cut(s) 99
HapII CCGG 3 cut(s) 103, 153, 480
HgaI GACGC 1 cut(s) 805
Hin1II CATG 2 cut(s) 403, 611
HincII GTYRAC 1 cut(s) 620
HindII GTYRAC 1 cut(s) 620
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 2 cut(s) 704, 814
HpaII CCGG 3 cut(s) 103, 153, 480
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 3 cut(s) 283, 620, 743
Hpy188I TCNGA 5 cut(s) 125, 628, 829, 887, 1034
Hpy188III TCNNGA 7 cut(s) 68, 111, 203, 406, 608, 785, 1004
Hpy8I GTNNAC 3 cut(s) 283, 620, 743
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 587, 701
HpyCH4III ACNGT 4 cut(s) 63, 303, 396, 726
HpyCH4IV ACGT 4 cut(s) 237, 658, 778, 906
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 158, 167, 368, 476, 829, 983
HpyF3I CTNAG 6 cut(s) 747, 807, 828, 858, 987, 1031
HpySE526I ACGT 4 cut(s) 237, 658, 778, 906
Hsp92II CATG 2 cut(s) 403, 611
Ksp22I TGATCA 2 cut(s) 628, 781
Kzo9I GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 6 cut(s) 218, 240, 370, 374, 785, 971
LweI GCATC 3 cut(s) 21, 46, 270
MabI ACCWGGT 1 cut(s) 285
MaeI CTAG 2 cut(s) 248, 729
MaeII ACGT 4 cut(s) 237, 658, 778, 906
MaeIII GTNAC 3 cut(s) 155, 303, 390
MalI GATC 6 cut(s) 143, 630, 689, 756, 783, 1022
MbiI CCGCTC 1 cut(s) 991
MboI GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
MboII GAAGA 8 cut(s) 62, 112, 124, 233, 236, 563, 695, 1030
MflI RGATCY 2 cut(s) 687, 1020
MluCI AATT 3 cut(s) 421, 532, 788
MlyI GAGTC 1 cut(s) 713
MseI TTAA 3 cut(s) 530, 551, 710
MspA1I CMGCKG 2 cut(s) 231, 1055
MspCI CTTAAG 1 cut(s) 709
MspI CCGG 3 cut(s) 103, 153, 480
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 7 cut(s) 19, 158, 167, 368, 476, 829, 983
NdeI CATATG 1 cut(s) 373
NdeII GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
NlaIII CATG 2 cut(s) 403, 611
NlaIV GGNNCC 1 cut(s) 87
NruI TCGCGA 1 cut(s) 112
PagI TCATGA 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 841
PfeI GAWTC 1 cut(s) 814
PkrI GCNGC 6 cut(s) 230, 233, 364, 385, 775, 961
PleI GAGTC 1 cut(s) 712
PmaCI CACGTG 1 cut(s) 779
PmlI CACGTG 1 cut(s) 779
PpsI GAGTC 1 cut(s) 712
Ppu21I YACGTR 2 cut(s) 779, 907
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 285
PspCI CACGTG 1 cut(s) 779
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 87
PstI CTGCAG 1 cut(s) 825
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 687, 1020
PvuII CAGCTG 2 cut(s) 231, 1055
RruI TCGCGA 1 cut(s) 112
RsaI GTAC 5 cut(s) 147, 521, 742, 905, 952
RsaNI GTAC 5 cut(s) 146, 520, 741, 904, 951
SalI GTCGAC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 530, 551, 710
SatI GCNGC 6 cut(s) 229, 232, 363, 384, 774, 960
Sau3AI GATC 6 cut(s) 141, 628, 687, 754, 781, 1020
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 1 cut(s) 287
SexAI ACCWGGT 1 cut(s) 285
SfaNI GCATC 3 cut(s) 21, 46, 270
SfcI CTRYAG 1 cut(s) 821
SmlI CTYRAG 2 cut(s) 580, 709
SmoI CTYRAG 2 cut(s) 580, 709
Sse9I AATT 3 cut(s) 421, 532, 788
SsiI CCGC 2 cut(s) 991, 1043
SspI AATATT 1 cut(s) 444
SspMI CTAG 2 cut(s) 248, 729
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 4 cut(s) 63, 303, 396, 726
TaiI ACGT 4 cut(s) 240, 661, 781, 909
TaqI TCGA 4 cut(s) 29, 179, 619, 694
TasI AATT 3 cut(s) 421, 532, 788
TatI WGTACW 2 cut(s) 519, 740
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 3 cut(s) 530, 551, 710
Tru9I TTAA 3 cut(s) 530, 551, 710
TscAI CASTG 1 cut(s) 66
TseI GCWGC 6 cut(s) 228, 231, 362, 383, 773, 959
TspDTI ATGAA 5 cut(s) 388, 503, 735, 827, 933
TspGWI ACGGA 2 cut(s) 78, 808
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 709
XapI RAATTY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 619
XspI CTAG 2 cut(s) 248, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.