Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004439.1

Orthogroup ID

OG0007340

Physical Location & Seq

Genomic Coordinates Reverse (-)

51121 .. 54447

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004439.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggcaacagagcgagagaggcacgcttcgatgccctcaacctcacccgaagacgatgcactgtttctggatataatgcacgaggctccgttgttcggccaccggaagtcgcgaagcctcttcggaagtgtcttctacttgatcgtactcgccggttacgcttctgtcgccgtcgcttcgatgtggatattcaagcctattcacgaatatatatcccaagtgctttgcagctgcaacgttcttcttctagttctcacaggcatctttcagcagtatttggtttaccaggtgcagaaaatacggttacagggttattatagcttcagccagaagttgaagcatattgttcgcctaccttttgcagctactgcatatggaactgctgcgatgttactgttcatggtctggaaaccccacatcaatttcctttctctaccatcaatattgagggttattatggtagttgaagcaatatgtgccggaacttttattagtctatatattggttatgttcatcagtacaactcattaaattcccagcctgatgtcttaaagtcattatattctcctcttcaaccctcaagttctttggaaggtttgaggtatcatgatgttggtcgactttctgatcaacaaatggctttattgcaatatcaacgtgaaaatctccattttttgagtgaagagatccttcgattgcaagagtccttaagtaaatatgaacggtctagtgatggtagtacacctcaggttgatcttgctcatctattggcagcacgtgatcaggaattacggacgctttctgctgagatgaatcaactgcagtctgagctacggcttgctcgttctttgatagctgagagggatactgaaatccagcaagtccgaacaaccaacaatcagtacgtggaggagaatgaaagattgagagctattttaggagaatggagtacccgagcagcaaagcttgaacgagcattagaagctgagcggatgtccaatcttgaactacaaaagaagatccccactctcagaaaccaaccgcaatcgtcagctgaaccaaccaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM192

Protein Analysis

356

Amino Acids

40.69

Weight (kDa)

7.16

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06005 AT2G06005 AT2G06005 AT2G06005 AT2G06005 AT2G06005 AT5G20580 AT5G20580
fragaria_vesca	FvH4_1g08690
malus_domestica	MD02G1091400.v1.1 MD15G1217700.v1.1
prunus_persica	Prupe.7G198700_v2.0.a1 Prupe.7G198700_v2.0.a1
pyrus_communis	pycom02g07290
rosa_chinensis	RchiOBHm_Chr2g0095141
rosa_laevigata	RLG00000016541
rosa_multiflora	Rmu_sc0004439.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146630 Rroxscaffold_2G00146650
rosa_samantha	Rh2AG096400 Rh2BG097800 Rh2CG099800 Rh2DG097200 Rh2DG097300
rosa_wichuraiana	Rw2G007260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	991
AccI	GTMKAC	1 cut(s)	619
AccII	CGCG	1 cut(s)	112
AciI	CCGC	2 cut(s)	991, 1043
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	2 cut(s)	682, 1015
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	307
AcvI	CACGTG	1 cut(s)	779
AfaI	GTAC	5 cut(s)	147, 521, 742, 905, 952
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	709
AgsI	TTSAA	6 cut(s)	193, 337, 467, 575, 971, 1007
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	9 cut(s)	231, 321, 365, 832, 857, 932, 967, 986, 1055
AluI	AGCT	9 cut(s)	231, 321, 365, 832, 857, 932, 967, 986, 1055
AlwI	GGATC	2 cut(s)	682, 1015
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	954
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	6 cut(s)	228, 231, 362, 383, 773, 959
ApoI	RAATTY	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	954
AxyI	CCTNAGG	1 cut(s)	747
BauI	CACGAG	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	779
BbsI	GAAGAC	2 cut(s)	57, 124
BbvI	GCAGC	6 cut(s)	218, 240, 370, 374, 785, 971
BccI	CCATC	2 cut(s)	445, 728
BceAI	ACGGC	2 cut(s)	155, 851
BcgI	CGANNNNNNTGC	4 cut(s)	38, 72, 329, 363
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	859
BclI	TGATCA	2 cut(s)	628, 781
BfaI	CTAG	2 cut(s)	248, 729
BfmI	CTRYAG	1 cut(s)	821
BfrI	CTTAAG	1 cut(s)	709
BfuI	GTATCC	1 cut(s)	859
BisI	GCNGC	6 cut(s)	229, 232, 363, 384, 774, 960
BlpI	GCTNAGC	1 cut(s)	987
BlsI	GCNGC	6 cut(s)	230, 233, 364, 385, 775, 961
Bme1390I	CCNGG	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	954
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	3 cut(s)	21, 46, 270
BpiI	GAAGAC	2 cut(s)	57, 124
Bpu1102I	GCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	565
BsaAI	YACGTR	2 cut(s)	779, 907
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	152
Bse21I	CCTNAGG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	999
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	6 cut(s)	761, 798, 819, 849, 978, 1045
BseRI	GAGGAG	2 cut(s)	558, 926
BseXI	GCAGC	6 cut(s)	218, 240, 370, 374, 785, 971
BseYI	CCCAGC	1 cut(s)	537
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	954
BsiSI	CCGG	3 cut(s)	103, 153, 480
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	954
Bsp143I	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
Bsp1720I	GCTNAGC	1 cut(s)	987
Bsp68I	TCGCGA	1 cut(s)	112
BspACI	CCGC	2 cut(s)	991, 1043
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	6 cut(s)	760, 799, 820, 850, 979, 1044
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	2 cut(s)	682, 1015
BspTI	CTTAAG	1 cut(s)	709
BsrBI	CCGCTC	1 cut(s)	991
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	4 cut(s)	63, 303, 396, 726
Bst6I	CTCTTC	3 cut(s)	125, 576, 678
BstAFI	CTTAAG	1 cut(s)	709
BstAPI	GCANNNNNTGC	2 cut(s)	368, 476
BstBAI	YACGTR	2 cut(s)	779, 907
BstC8I	GCNNGC	2 cut(s)	24, 840
BstDEI	CTNAG	6 cut(s)	747, 807, 828, 858, 987, 1031
BstF5I	GGATG	1 cut(s)	999
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	6 cut(s)	144, 631, 690, 757, 784, 1023
BstMBI	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 158, 167, 368, 476, 829, 983
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	6 cut(s)	218, 240, 370, 374, 785, 971
BstV2I	GAAGAC	2 cut(s)	57, 124
BstX2I	RGATCY	2 cut(s)	687, 1020
BstYI	RGATCY	2 cut(s)	687, 1020
Bsu36I	CCTNAGG	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	999
BtsIMutI	CAGTG	1 cut(s)	59
BtuMI	TCGCGA	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	24, 840
CaiI	CAGNNNCTG	1 cut(s)	368
CciI	TCATGA	1 cut(s)	607
Cfr10I	RCCGGY	1 cut(s)	152
CseI	GACGC	1 cut(s)	805
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	5 cut(s)	146, 520, 741, 904, 951
CviAII	CATG	2 cut(s)	400, 608
CviQI	GTAC	5 cut(s)	146, 520, 741, 904, 951
DdeI	CTNAG	6 cut(s)	747, 807, 828, 858, 987, 1031
DpnI	GATC	6 cut(s)	143, 630, 689, 756, 783, 1022
DpnII	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	125, 576, 678
EarI	CTCTTC	3 cut(s)	125, 576, 678
Eco57I	CTGAAG	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	779
Eco81I	CCTNAGG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	954
EcoRII	CCWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	403, 611
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FatI	CATG	2 cut(s)	399, 607
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	2 cut(s)	628, 781
FblI	GTMKAC	1 cut(s)	619
Fnu4HI	GCNGC	6 cut(s)	229, 232, 363, 384, 774, 960
FokI	GGATG	1 cut(s)	1006
Fsp4HI	GCNGC	6 cut(s)	229, 232, 363, 384, 774, 960
FspBI	CTAG	2 cut(s)	248, 729
GluI	GCNGC	6 cut(s)	229, 232, 363, 384, 774, 960
GsaI	CCCAGC	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	3 cut(s)	103, 153, 480
HgaI	GACGC	1 cut(s)	805
Hin1II	CATG	2 cut(s)	403, 611
HincII	GTYRAC	1 cut(s)	620
HindII	GTYRAC	1 cut(s)	620
HindIII	AAGCTT	1 cut(s)	965
HinfI	GANTC	2 cut(s)	704, 814
HpaII	CCGG	3 cut(s)	103, 153, 480
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	3 cut(s)	283, 620, 743
Hpy188I	TCNGA	5 cut(s)	125, 628, 829, 887, 1034
Hpy188III	TCNNGA	7 cut(s)	68, 111, 203, 406, 608, 785, 1004
Hpy8I	GTNNAC	3 cut(s)	283, 620, 743
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	587, 701
HpyCH4III	ACNGT	4 cut(s)	63, 303, 396, 726
HpyCH4IV	ACGT	4 cut(s)	237, 658, 778, 906
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 158, 167, 368, 476, 829, 983
HpyF3I	CTNAG	6 cut(s)	747, 807, 828, 858, 987, 1031
HpySE526I	ACGT	4 cut(s)	237, 658, 778, 906
Hsp92II	CATG	2 cut(s)	403, 611
Ksp22I	TGATCA	2 cut(s)	628, 781
Kzo9I	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	6 cut(s)	218, 240, 370, 374, 785, 971
LweI	GCATC	3 cut(s)	21, 46, 270
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	2 cut(s)	248, 729
MaeII	ACGT	4 cut(s)	237, 658, 778, 906
MaeIII	GTNAC	3 cut(s)	155, 303, 390
MalI	GATC	6 cut(s)	143, 630, 689, 756, 783, 1022
MbiI	CCGCTC	1 cut(s)	991
MboI	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
MboII	GAAGA	8 cut(s)	62, 112, 124, 233, 236, 563, 695, 1030
MflI	RGATCY	2 cut(s)	687, 1020
MluCI	AATT	3 cut(s)	421, 532, 788
MlyI	GAGTC	1 cut(s)	713
MseI	TTAA	3 cut(s)	530, 551, 710
MspA1I	CMGCKG	2 cut(s)	231, 1055
MspCI	CTTAAG	1 cut(s)	709
MspI	CCGG	3 cut(s)	103, 153, 480
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	7 cut(s)	19, 158, 167, 368, 476, 829, 983
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
NlaIII	CATG	2 cut(s)	403, 611
NlaIV	GGNNCC	1 cut(s)	87
NruI	TCGCGA	1 cut(s)	112
PagI	TCATGA	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	841
PfeI	GAWTC	1 cut(s)	814
PkrI	GCNGC	6 cut(s)	230, 233, 364, 385, 775, 961
PleI	GAGTC	1 cut(s)	712
PmaCI	CACGTG	1 cut(s)	779
PmlI	CACGTG	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	712
Ppu21I	YACGTR	2 cut(s)	779, 907
Psp1406I	AACGTT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	779
PspFI	CCCAGC	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	687, 1020
PvuII	CAGCTG	2 cut(s)	231, 1055
RruI	TCGCGA	1 cut(s)	112
RsaI	GTAC	5 cut(s)	147, 521, 742, 905, 952
RsaNI	GTAC	5 cut(s)	146, 520, 741, 904, 951
SalI	GTCGAC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	530, 551, 710
SatI	GCNGC	6 cut(s)	229, 232, 363, 384, 774, 960
Sau3AI	GATC	6 cut(s)	141, 628, 687, 754, 781, 1020
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	287
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	3 cut(s)	21, 46, 270
SfcI	CTRYAG	1 cut(s)	821
SmlI	CTYRAG	2 cut(s)	580, 709
SmoI	CTYRAG	2 cut(s)	580, 709
Sse9I	AATT	3 cut(s)	421, 532, 788
SsiI	CCGC	2 cut(s)	991, 1043
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	248, 729
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	63, 303, 396, 726
TaiI	ACGT	4 cut(s)	240, 661, 781, 909
TaqI	TCGA	4 cut(s)	29, 179, 619, 694
TasI	AATT	3 cut(s)	421, 532, 788
TatI	WGTACW	2 cut(s)	519, 740
TfiI	GAWTC	1 cut(s)	814
Tru1I	TTAA	3 cut(s)	530, 551, 710
Tru9I	TTAA	3 cut(s)	530, 551, 710
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	6 cut(s)	228, 231, 362, 383, 773, 959
TspDTI	ATGAA	5 cut(s)	388, 503, 735, 827, 933
TspGWI	ACGGA	2 cut(s)	78, 808
TspRI	CASTG	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	709
XapI	RAATTY	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	619
XspI	CTAG	2 cut(s)	248, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.