AT2G06010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011406
Physical Location & Seq
Forward (+)
2336702 .. 2338902
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06010.1

Sequence Viewer

Length: 567 bp
ATGGAGCCGCCGAGTTCGAGACCGGAGGAACCTCCGTCATGGGAGGACCTTTACAAAATCAATCTTATGCCATCGGAGCTATTCCTTAAGTTCCGCAAAGAGCTTCAAGGCCTTCGCGTCGGCGTCAATCTCGAGTTATATAACGAACCCACGAATGATTACCACGCAAAGCTTGTTTTGAAGCCTCTATGTCCAGAAAGGAAGTGGAAGTTTATATATGAGCCGCTACACCAAGAAGTTCGTGTTTTATCGAAGAAGATTCCTGTCACCAGATTTCTAAACCTCCAGGTTGGTGTTGGACATAACTTTCAAATGAATGCAATTGGTTGGAAATGGAAGCTTACTTCATGTTTGGGTGGAGATGGTGTGTCTCGGATTCGAAATAAAACTACTCTTGGTCTTAGTCCTGGTATCGATTTCCGGTTTGGATGGAGAGCTGATTTTGTACTCCCAGAGGTTACTGGGGCCCTTGGTACTGAGGAACCGTTATTCAACATGAGCTCCGGGCGTTTAGAGGCATCACTAGACAGAGTAGAGGCCATTGTAACCCATTCAGATTATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.54

Weight (kDa)

7.78

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7781 PF25003 13 - 184 8.6e-90 Domain of unknown function (DUF7781)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 3 cut(s) 8, 94, 224
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 447, 475
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 4 cut(s) 107, 181, 311, 493
AjnI CCWGG 2 cut(s) 285, 406
AluBI AGCT 6 cut(s) 79, 103, 172, 340, 437, 501
AluI AGCT 6 cut(s) 79, 103, 172, 340, 437, 501
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 2 cut(s) 13, 375
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 3 cut(s) 109, 465, 537
ApaI GGGCCC 1 cut(s) 469
AspS9I GGNCC 3 cut(s) 46, 465, 466
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 259
AsuII TTCGAA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 469
BanII GRGCYC 2 cut(s) 469, 503
Bbv12I GWGCWC 1 cut(s) 503
BccI CCATC 3 cut(s) 79, 356, 423
BciT130I CCWGG 2 cut(s) 287, 408
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 13, 375
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 563
BfrI CTTAAG 1 cut(s) 86
BisI GCNGC 2 cut(s) 8, 224
BlsI GCNGC 2 cut(s) 9, 225
Bme1390I CCNGG 3 cut(s) 287, 408, 505
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 3 cut(s) 46, 465, 466
BmiI GGNNCC 5 cut(s) 6, 30, 466, 467, 483
BmrFI CCNGG 3 cut(s) 287, 408, 505
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 527
BmuI ACTGGG 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 505
Bsa29I ATCGAT 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 469
BsaWI WCCGGW 2 cut(s) 22, 420
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 485, 515
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 2 cut(s) 287, 408
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 469
BseGI GGATG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 466
BseSI GKGCMC 1 cut(s) 469
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 111, 467, 539
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 23, 421, 504
BsmAI GTCTC 2 cut(s) 13, 375
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 3 cut(s) 111, 467, 539
Bso31I GGTCTC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 379
Bsp120I GGGCCC 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 469, 503
BspACI CCGC 3 cut(s) 8, 94, 224
BspANI GGCC 3 cut(s) 111, 467, 539
BspCNI CTCAG 1 cut(s) 469
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 5 cut(s) 6, 30, 466, 467, 483
BspT104I TTCGAA 1 cut(s) 379
BspTI CTTAAG 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 2 cut(s) 287, 408
Bst4CI ACNGT 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 379
BstDEI CTNAG 2 cut(s) 401, 477
BstF5I GGATG 1 cut(s) 434
BstFNI CGCG 1 cut(s) 117
BstMAI GTCTC 2 cut(s) 13, 375
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 287, 408
BstSCI CCNGG 3 cut(s) 285, 406, 503
BstSFI CTRYAG 1 cut(s) 563
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 3 cut(s) 111, 467, 539
BsuTUI ATCGAT 1 cut(s) 414
BtsCI GGATG 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 46, 465, 466
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 2 cut(s) 106, 112
Csp6I GTAC 2 cut(s) 446, 474
CviAII CATG 3 cut(s) 39, 348, 496
CviQI GTAC 2 cut(s) 446, 474
DdeI CTNAG 2 cut(s) 401, 477
Ecl136II GAGCTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 111
Eco24I GRGCYC 2 cut(s) 469, 503
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 501
EcoO109I RGGNCCY 3 cut(s) 46, 465, 466
EcoRII CCWGG 2 cut(s) 285, 406
EcoT14I CCWWGG 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 469, 503
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 3 cut(s) 42, 351, 499
FatI CATG 3 cut(s) 38, 347, 495
Fnu4HI GCNGC 2 cut(s) 8, 224
FokI GGATG 1 cut(s) 441
FriOI GRGCYC 2 cut(s) 469, 503
Fsp4HI GCNGC 2 cut(s) 8, 224
FspBI CTAG 1 cut(s) 524
GluI GCNGC 2 cut(s) 8, 224
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 111, 467, 539
HapII CCGG 3 cut(s) 23, 421, 504
HgaI GACGC 2 cut(s) 106, 112
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 3 cut(s) 42, 351, 499
HindIII AAGCTT 2 cut(s) 170, 338
HinfI GANTC 2 cut(s) 259, 376
HpaII CCGG 3 cut(s) 23, 421, 504
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 76, 375, 556
Hpy188III TCNNGA 3 cut(s) 18, 131, 194
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 401, 477
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 42, 351, 499
LmnI GCTCC 3 cut(s) 4, 76, 506
LweI GCATC 1 cut(s) 527
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 3 cut(s) 265, 457, 544
MboII GAAGA 2 cut(s) 265, 268
MfeI CAATTG 1 cut(s) 321
MhlI GDGCHC 2 cut(s) 469, 503
MluCI AATT 1 cut(s) 321
MmeI TCCRAC 2 cut(s) 277, 308
MnlI CCTC 9 cut(s) 19, 37, 42, 195, 293, 448, 472, 508, 529
MseI TTAA 1 cut(s) 87
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 3 cut(s) 23, 421, 504
MspR9I CCNGG 3 cut(s) 287, 408, 505
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 287, 408
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 505
NlaIII CATG 3 cut(s) 42, 351, 499
NlaIV GGNNCC 5 cut(s) 6, 30, 466, 467, 483
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 265
NspV TTCGAA 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 111
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 259, 376
PkrI GCNGC 2 cut(s) 9, 225
PpuMI RGGWCCY 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 285, 406
PspGI CCWGG 2 cut(s) 285, 406
PspN4I GGNNCC 5 cut(s) 6, 30, 466, 467, 483
PspOMI GGGCCC 1 cut(s) 465
PspPI GGNCC 3 cut(s) 46, 465, 466
PspPPI RGGWCCY 1 cut(s) 46
RsaI GTAC 2 cut(s) 447, 475
RsaNI GTAC 2 cut(s) 446, 474
SacI GAGCTC 1 cut(s) 503
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 8, 224
Sau96I GGNCC 3 cut(s) 46, 465, 466
ScrFI CCNGG 3 cut(s) 287, 408, 505
SduI GDGCHC 2 cut(s) 469, 503
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 1 cut(s) 563
Sfr274I CTCGAG 1 cut(s) 131
SfuI TTCGAA 1 cut(s) 379
SinI GGWCC 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 86, 131
SmoI CTYRAG 2 cut(s) 86, 131
Sse9I AATT 1 cut(s) 321
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 3 cut(s) 8, 94, 224
SspMI CTAG 1 cut(s) 524
SstI GAGCTC 1 cut(s) 503
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 285, 406, 503
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 486
TaqI TCGA 5 cut(s) 17, 132, 251, 379, 414
TasI AATT 1 cut(s) 321
TatI WGTACW 1 cut(s) 445
TauI GCSGC 2 cut(s) 10, 226
TfiI GAWTC 2 cut(s) 259, 376
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 329, 336
TspGWI ACGGA 1 cut(s) 24
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 2 cut(s) 201, 293
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.