Rroxscaffold_2G00146790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011406
Physical Location & Seq
Forward (+)
84670924 .. 84674713
3790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146790.1

Sequence Viewer

Length: 633 bp
ATGGATAGGAATTCTAATGGTGATGAAGAACCCAGTTCGTGGGAAGAGCTTTACAGTATCAATTTGATACCATCAGAGTTGTTTCTCAAGTTCAGGAAAGAACTACAGGGTTTAAGGGTCGGTCTCAATTTGGAGTTCTATAATGCTCCAATCAATGAATATCAAGCAAAGATTGTGTTGAAGCCCTTAGCTCCGGATCGGAGGTGGAAGTTCATCTATGAGCCTATCCGTCAAGATGTCCGTGTTCTTTCCAAGAAGATTCCTCTAACTAACTTTCTAAATCTTCAGGTTGGCATTGGCCATAATTTTCAAATGAATGCAACTGGATGGAAATGGAAGCTTACTACATGTTTTGGTGGAGATGGCATATCTCGGATTCGGAATAAGACATCACTTGGCGTATGCCCTGGTGTAGATTTGCGCTTTGGGTGGAGGGCGGATTATGTACTTCCAGAAGTTACCGGGGCTCTGGGTACTGGCGAAGCATTGTTTAACATGAGTAGTGGGAAATTGGAAGCATCACTGGACAGAGTTGAGGGTATTCTAACGCACAATGAGAAGGGCATTCTAACTCACAATGATACACCCGATCTATACGACTATAAAGACCAGCAGGAGCCAGCAGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.91

Weight (kDa)

5.51

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7781 PF25003 13 - 184 3.7e-90 Domain of unknown function (DUF7781)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 1 cut(s) 437
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 2 cut(s) 447, 475
AfiI CCNNNNNNNGG 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 2 cut(s) 181, 311
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 3 cut(s) 49, 191, 340
AluI AGCT 3 cut(s) 49, 191, 340
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 204
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 1 cut(s) 423
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 1 cut(s) 32
BalI TGGCCA 1 cut(s) 300
BanII GRGCYC 1 cut(s) 469
BccI CCATC 3 cut(s) 79, 321, 356
BciT130I CCWGG 1 cut(s) 408
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 104
Bme1390I CCNGG 2 cut(s) 408, 463
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 2 cut(s) 408, 463
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 527
BmuI ACTGGG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 406, 462
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 4 cut(s) 33, 328, 481, 528
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 406, 462
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 39
BseNI ACTGG 4 cut(s) 33, 328, 481, 528
BshFI GGCC 1 cut(s) 300
BsiSI CCGG 2 cut(s) 194, 462
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 128
BsmI GAATGC 2 cut(s) 322, 564
BsnI GGCC 1 cut(s) 300
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 469
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 2 cut(s) 196, 589
BspACI CCGC 1 cut(s) 437
BspANI GGCC 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 618
BspPI GGATC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 128
BsrI ACTGG 4 cut(s) 33, 328, 481, 528
BssECI CCNNGG 2 cut(s) 406, 462
BssMI GATC 2 cut(s) 196, 589
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 2 cut(s) 199, 592
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 196, 589
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 406, 461
BstSFI CTRYAG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 300
BtsCI GGATG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 621
CfoI GCGC 1 cut(s) 423
Csp6I GTAC 2 cut(s) 446, 474
CviAII CATG 2 cut(s) 348, 496
CviJI RGCY 8 cut(s) 49, 184, 191, 223, 300, 340, 467, 619
CviKI_1 RGCY 8 cut(s) 49, 184, 191, 223, 300, 340, 467, 619
CviQI GTAC 2 cut(s) 446, 474
DdeI CTNAG 1 cut(s) 187
DpnI GATC 2 cut(s) 198, 591
DpnII GATC 2 cut(s) 196, 589
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EciI GGCGGA 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 469
FaeI CATG 2 cut(s) 351, 499
FatI CATG 2 cut(s) 347, 495
FokI GGATG 1 cut(s) 339
FriOI GRGCYC 1 cut(s) 469
GlaI GCGC 1 cut(s) 422
HaeIII GGCC 1 cut(s) 300
HapII CCGG 2 cut(s) 194, 462
HhaI GCGC 1 cut(s) 423
Hin1II CATG 2 cut(s) 351, 499
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 2 cut(s) 259, 376
HpaII CCGG 2 cut(s) 194, 462
HphI GGTGA 1 cut(s) 32
Hpy188I TCNGA 4 cut(s) 76, 201, 375, 381
Hpy188III TCNNGA 4 cut(s) 94, 194, 233, 452
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 2 cut(s) 351, 499
HspAI GCGC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 196, 589
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 3 cut(s) 151, 196, 616
LweI GCATC 1 cut(s) 527
MaeIII GTNAC 1 cut(s) 457
MalI GATC 2 cut(s) 198, 591
MboI GATC 2 cut(s) 196, 589
MboII GAAGA 4 cut(s) 38, 56, 268, 275
MhlI GDGCHC 1 cut(s) 469
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 5 cut(s) 10, 61, 127, 304, 509
MluNI TGGCCA 1 cut(s) 300
MnlI CCTC 5 cut(s) 195, 273, 426, 529, 619
Mox20I TGGCCA 1 cut(s) 300
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 300
MseI TTAA 2 cut(s) 113, 492
Msp20I TGGCCA 1 cut(s) 300
MspI CCGG 2 cut(s) 194, 462
MspR9I CCNGG 2 cut(s) 408, 463
Mva1269I GAATGC 2 cut(s) 322, 564
MvaI CCWGG 1 cut(s) 408
NciI CCSGG 1 cut(s) 463
NdeII GATC 2 cut(s) 196, 589
NlaIII CATG 2 cut(s) 351, 499
NlaIV GGNNCC 1 cut(s) 618
NspI RCATGY 1 cut(s) 351
PciI ACATGT 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 39
PctI GAATGC 2 cut(s) 322, 564
PfeI GAWTC 2 cut(s) 259, 376
PflMI CCANNNNNTGG 1 cut(s) 39
PscI ACATGT 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 618
RsaI GTAC 2 cut(s) 447, 475
RsaNI GTAC 2 cut(s) 446, 474
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 113, 492
Sau3AI GATC 2 cut(s) 196, 589
ScrFI CCNGG 2 cut(s) 408, 463
SduI GDGCHC 1 cut(s) 469
SetI ASST 5 cut(s) 51, 193, 206, 291, 342
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 5 cut(s) 10, 61, 127, 304, 509
SsiI CCGC 1 cut(s) 437
StyD4I CCNGG 2 cut(s) 406, 461
TaaI ACNGT 1 cut(s) 56
TaqII GACCGA 1 cut(s) 110
TasI AATT 5 cut(s) 10, 61, 127, 304, 509
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 2 cut(s) 259, 376
Tru1I TTAA 2 cut(s) 113, 492
Tru9I TTAA 2 cut(s) 113, 492
TscAI CASTG 1 cut(s) 528
TspDTI ATGAA 4 cut(s) 39, 171, 202, 329
TspGWI ACGGA 2 cut(s) 218, 230
TspRI CASTG 1 cut(s) 528
Van91I CCANNNNNTGG 1 cut(s) 39
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.