MD02G1091100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011406
Physical Location & Seq
Reverse (-)
7213720 .. 7216404
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1091100.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGATTGGGGTTCGAGTGGGGAAGAACCAACTTCGTGCGAAGAACTTTACAGTGTAAATTTGATACCGTCGGAGTTATTTTTCAAGTTCCGGAAAGAAGTGCAGAATTTAAGGGTCGGCCTCAATCTGGAGTTCTTTAATGCTCCAATCAATGAGTTTCAAGGAAAGATTGTATTGAAGCCGTTGGCTCCTGAACGGATGTGGAAGTTCATCTACGAGCCTATCCATCAGGATGTTCGTGTTCTTTCAAAAAAGATTCCTCTAACTGGATATCTAAATCTTCAGGTTGGCATAGGCCATAATTTTCAAATGAATGCAACCGGGTGGAAATGGAAACTTACTACTTGTTTTGGTGGAGATGGCATATCTCGGATCCGGAATAAGACATCGGTTGGCTTGGTCCCTGGTGTGGATTTGCGCTTTGGGTGGAGGGCGGATTATGTGCTTCCAGAAATCACCGGGGCGTTGGGTACTGGTGAACCGTGGTTCAACATGAACTCGGGAAAGTTACAAGCATCACTAGATAGAGTTGAGGCCATCGTAAACTACACTGATATCTACAATACATACAAGTCCAAAGACAAGGAACAGCAGCAGAGACCTGAAACGGATGTGATTTCTTATTCCAGTCCTTCGGATCCCTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.6

Weight (kDa)

6.75

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7781 PF25003 12 - 181 2.7e-88 Domain of unknown function (DUF7781)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 90, 375
AciI CCGC 1 cut(s) 434
AclWI GGATC 4 cut(s) 367, 380, 632, 645
AcsI RAATTY 2 cut(s) 58, 106
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 3 cut(s) 127, 266, 409
AgsI TTSAA 6 cut(s) 85, 161, 178, 249, 308, 490
AjnI CCWGG 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 4 cut(s) 367, 380, 632, 645
Ama87I CYCGRG 1 cut(s) 499
Aor13HI TCCGGA 2 cut(s) 90, 375
AoxI GGCC 3 cut(s) 118, 295, 534
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 2 cut(s) 58, 106
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 2 cut(s) 322, 460
AsuHPI GGTGA 2 cut(s) 448, 488
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 400
BamHI GGATCC 2 cut(s) 372, 637
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbvI GCAGC 1 cut(s) 604
BccI CCATC 3 cut(s) 234, 353, 545
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 405
BcnI CCSGG 2 cut(s) 322, 460
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 1 cut(s) 521
BisI GCNGC 1 cut(s) 593
BlsI GCNGC 1 cut(s) 594
Bme1390I CCNGG 3 cut(s) 322, 405, 460
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 4 cut(s) 189, 374, 402, 639
BmrFI CCNGG 3 cut(s) 322, 405, 460
BmsI GCATC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 322, 460
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 3 cut(s) 403, 459, 482
BsaWI WCCGGW 2 cut(s) 90, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 266, 409
Bse1I ACTGG 3 cut(s) 271, 478, 627
BseAI TCCGGA 2 cut(s) 90, 375
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 403, 459, 482
BseGI GGATG 3 cut(s) 204, 238, 616
BseLI CCNNNNNNNGG 3 cut(s) 127, 266, 409
BseNI ACTGG 3 cut(s) 271, 478, 627
BseXI GCAGC 1 cut(s) 604
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 3 cut(s) 120, 297, 536
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 4 cut(s) 91, 321, 376, 459
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 3 cut(s) 127, 266, 409
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 3 cut(s) 120, 297, 536
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 499
Bsp13I TCCGGA 2 cut(s) 90, 375
Bsp143I GATC 2 cut(s) 372, 637
BspACI CCGC 1 cut(s) 434
BspANI GGCC 3 cut(s) 120, 297, 536
BspEI TCCGGA 2 cut(s) 90, 375
BspLI GGNNCC 4 cut(s) 189, 374, 402, 639
BspPI GGATC 4 cut(s) 367, 380, 632, 645
BspTNI GGTCTC 1 cut(s) 592
BsrI ACTGG 3 cut(s) 271, 478, 627
BssECI CCNNGG 3 cut(s) 403, 459, 482
BssMI GATC 2 cut(s) 372, 637
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 53, 69, 483
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 3 cut(s) 204, 238, 616
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 2 cut(s) 375, 640
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 2 cut(s) 372, 637
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 3 cut(s) 320, 403, 458
BstV1I GCAGC 1 cut(s) 604
BstX2I RGATCY 2 cut(s) 372, 637
BstYI RGATCY 2 cut(s) 372, 637
BsuRI GGCC 3 cut(s) 120, 297, 536
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 3 cut(s) 204, 238, 616
BtsIMutI CAGTG 2 cut(s) 58, 549
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 471
CviAII CATG 1 cut(s) 493
CviJI RGCY 7 cut(s) 120, 181, 188, 220, 297, 396, 536
CviKI_1 RGCY 7 cut(s) 120, 181, 188, 220, 297, 396, 536
CviQI GTAC 1 cut(s) 471
DpnI GATC 2 cut(s) 374, 639
DpnII GATC 2 cut(s) 372, 637
EciI GGCGGA 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 592
Eco32I GATATC 2 cut(s) 272, 556
Eco47I GGWCC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 2 cut(s) 272, 556
FaeI CATG 1 cut(s) 496
FaiI YATR 6 cut(s) 293, 300, 365, 441, 494, 568
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 593
FokI GGATG 3 cut(s) 211, 245, 623
Fsp4HI GCNGC 1 cut(s) 593
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 419
GluI GCNGC 1 cut(s) 593
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 3 cut(s) 120, 297, 536
HapII CCGG 4 cut(s) 91, 321, 376, 459
HhaI GCGC 1 cut(s) 420
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 1 cut(s) 256
HpaII CCGG 4 cut(s) 91, 321, 376, 459
HphI GGTGA 2 cut(s) 448, 488
Hpy166II GTNNAC 2 cut(s) 479, 544
Hpy188I TCNGA 3 cut(s) 73, 372, 637
Hpy188III TCNNGA 7 cut(s) 91, 128, 191, 230, 376, 449, 501
Hpy8I GTNNAC 2 cut(s) 479, 544
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 642
HpyCH4III ACNGT 3 cut(s) 53, 69, 483
HpyCH4V TGCA 2 cut(s) 103, 317
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 1 cut(s) 418
Kpn2I TCCGGA 2 cut(s) 90, 375
Kzo9I GATC 2 cut(s) 372, 637
LmnI GCTCC 2 cut(s) 148, 193
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 1 cut(s) 524
MaeI CTAG 1 cut(s) 521
MaeIII GTNAC 1 cut(s) 507
MalI GATC 2 cut(s) 374, 639
MboI GATC 2 cut(s) 372, 637
MboII GAAGA 3 cut(s) 35, 53, 272
MflI RGATCY 2 cut(s) 372, 637
MluCI AATT 3 cut(s) 58, 106, 301
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 4 cut(s) 131, 270, 423, 526
MroI TCCGGA 2 cut(s) 90, 375
MseI TTAA 3 cut(s) 110, 138, 644
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 4 cut(s) 91, 321, 376, 459
MspR9I CCNGG 3 cut(s) 322, 405, 460
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 405
NciI CCSGG 2 cut(s) 322, 460
NdeII GATC 2 cut(s) 372, 637
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 4 cut(s) 189, 374, 402, 639
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 4 cut(s) 189, 374, 402, 639
PspPI GGNCC 1 cut(s) 400
PsuI RGATCY 2 cut(s) 372, 637
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 3 cut(s) 110, 138, 644
SatI GCNGC 1 cut(s) 593
Sau3AI GATC 2 cut(s) 372, 637
Sau96I GGNCC 1 cut(s) 400
ScrFI CCNGG 3 cut(s) 322, 405, 460
SetI ASST 2 cut(s) 288, 604
SfaNI GCATC 1 cut(s) 524
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 3 cut(s) 58, 106, 301
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 3 cut(s) 320, 403, 458
TaaI ACNGT 3 cut(s) 53, 69, 483
TaqI TCGA 1 cut(s) 14
TasI AATT 3 cut(s) 58, 106, 301
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 3 cut(s) 110, 138, 644
Tru9I TTAA 3 cut(s) 110, 138, 644
TscAI CASTG 2 cut(s) 58, 556
TseI GCWGC 1 cut(s) 592
TspDTI ATGAA 3 cut(s) 199, 326, 509
TspGWI ACGGA 2 cut(s) 211, 623
TspRI CASTG 2 cut(s) 58, 556
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 2 cut(s) 58, 106
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.