FvH4_1g08630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011406
Physical Location & Seq
Reverse (-)
4580555 .. 4582734
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08630.t2

Sequence Viewer

Length: 630 bp
ATGGATTGGAATTCTAATGGTGAAGAACCCAGTTCGTGGGAGGAGCTTTACAGTATCAATTTGATACCATCAGAGTTGTTTCTTAAGTTCCGGAAAGACCTACAGGGTTTAAGGGTCGGTATCAATTTGGAGTTGTATAATGCTCCAATCAATGATTATCAAGCAAAGATTGTCTTGAAGCACTTAGCTCCTGACCGGAGGTTGAAGTTCATCTATGAACCTATCCGTCAAGATGTCCGTGTTCTTTCCAAGAAGATTCCTTTAACTAACTTTCTAAATCTTCAGGTTGGCGTTGGCCATAATTTTCGAATGAATACAACTGGATGGAAATGGAAGCTTACTACATGTTTTGGTGGAGATGGTATATCTCGGATTCGGAATAAGACATCACTTGGCGTGTGCCCTGGTGTGGATTTGCGCTTTGGGTGGAGGGCAGATTACGTACTTCCAGAAGTTACTGGGGCTCTGGGTACTGGCGAAGCATTGTTTAACATGAGCACAGGAAAATTGGAAGCATCACTGGACAGAGTTGAGTGCATTCTAACACACAATGATAAGGGCATTCTTGCGCCCAACGATACAAAGGATCTATACGACTGTAAAGACCAGCAGGAACCGGCAGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.72

Weight (kDa)

5.98

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7781 PF25003 12 - 154 2.2e-72 Domain of unknown function (DUF7781)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 90
AclWI GGATC 1 cut(s) 594
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 2 cut(s) 444, 472
AfiI CCNNNNNNNGG 2 cut(s) 36, 409
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 2 cut(s) 178, 205
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 3 cut(s) 46, 188, 337
AluI AGCT 3 cut(s) 46, 188, 337
Alw21I GWGCWC 1 cut(s) 500
AlwI GGATC 1 cut(s) 594
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 2 cut(s) 420, 571
AsuHPI GGTGA 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 404
BalI TGGCCA 1 cut(s) 297
BanII GRGCYC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 500
BccI CCATC 3 cut(s) 76, 318, 353
BciT130I CCWGG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 405
BmrI ACTGGG 2 cut(s) 24, 468
BmsI GCATC 1 cut(s) 524
BmuI ACTGGG 2 cut(s) 24, 468
Bpu14I TTCGAA 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 403
BsaWI WCCGGW 2 cut(s) 90, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 409
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 5 cut(s) 30, 325, 463, 478, 525
BseAI TCCGGA 1 cut(s) 90
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 36, 409
BseNI ACTGG 5 cut(s) 30, 325, 463, 478, 525
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 404
BshFI GGCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 500
BsiSI CCGG 3 cut(s) 91, 196, 617
BslI CCNNNNNNNGG 2 cut(s) 36, 409
BsmI GAATGC 2 cut(s) 537, 561
BsnI GGCC 1 cut(s) 297
Bsp119I TTCGAA 1 cut(s) 307
Bsp1286I GDGCHC 3 cut(s) 404, 466, 500
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 586
BspANI GGCC 1 cut(s) 297
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 615
BspPI GGATC 1 cut(s) 594
BspT104I TTCGAA 1 cut(s) 307
BspTI CTTAAG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 616
BsrI ACTGG 5 cut(s) 30, 325, 463, 478, 525
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 1 cut(s) 586
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 53, 599
BstAFI CTTAAG 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 329
BstHHI GCGC 2 cut(s) 420, 571
BstKTI GATC 1 cut(s) 589
BstMBI GATC 1 cut(s) 586
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 404
BstSNI TACGTA 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 518
CfoI GCGC 2 cut(s) 420, 571
Cfr10I RCCGGY 1 cut(s) 616
Csp6I GTAC 2 cut(s) 443, 471
CviAII CATG 2 cut(s) 345, 493
CviJI RGCY 5 cut(s) 46, 188, 297, 337, 464
CviKI_1 RGCY 5 cut(s) 46, 188, 297, 337, 464
CviQI GTAC 2 cut(s) 443, 471
DdeI CTNAG 1 cut(s) 184
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 295
Eco105I TACGTA 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 466
FaeI CATG 2 cut(s) 348, 496
FaiI YATR 7 cut(s) 138, 216, 300, 346, 365, 494, 592
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 344, 492
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 466
GlaI GCGC 2 cut(s) 419, 570
HaeIII GGCC 1 cut(s) 297
HapII CCGG 3 cut(s) 91, 196, 617
HhaI GCGC 2 cut(s) 420, 571
Hin1II CATG 2 cut(s) 348, 496
Hin6I GCGC 2 cut(s) 418, 569
HinP1I GCGC 2 cut(s) 418, 569
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 256, 373
HpaII CCGG 3 cut(s) 91, 196, 617
HphI GGTGA 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 73, 372, 378
Hpy188III TCNNGA 5 cut(s) 91, 175, 191, 230, 449
HpyCH4III ACNGT 2 cut(s) 53, 599
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 1 cut(s) 537
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 2 cut(s) 348, 496
HspAI GCGC 2 cut(s) 418, 569
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 586
LmnI GCTCC 3 cut(s) 43, 148, 193
LweI GCATC 1 cut(s) 524
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 454
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MboII GAAGA 3 cut(s) 35, 265, 272
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 3 cut(s) 404, 466, 500
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 5 cut(s) 10, 58, 124, 301, 506
MluNI TGGCCA 1 cut(s) 297
MnlI CCTC 4 cut(s) 34, 192, 423, 616
Mox20I TGGCCA 1 cut(s) 297
MroI TCCGGA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 297
MseI TTAA 4 cut(s) 84, 110, 263, 489
Msp20I TGGCCA 1 cut(s) 297
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 3 cut(s) 91, 196, 617
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 2 cut(s) 537, 561
MvaI CCWGG 1 cut(s) 405
NdeII GATC 1 cut(s) 586
NlaIII CATG 2 cut(s) 348, 496
NlaIV GGNNCC 1 cut(s) 615
NspI RCATGY 1 cut(s) 348
NspV TTCGAA 1 cut(s) 307
PciI ACATGT 1 cut(s) 344
PctI GAATGC 2 cut(s) 537, 561
PfeI GAWTC 2 cut(s) 256, 373
PflMI CCANNNNNTGG 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 442
PscI ACATGT 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 615
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 2 cut(s) 444, 472
RsaNI GTAC 2 cut(s) 443, 471
SaqAI TTAA 4 cut(s) 84, 110, 263, 489
Sau3AI GATC 1 cut(s) 586
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 3 cut(s) 404, 466, 500
SetI ASST 8 cut(s) 48, 102, 190, 203, 223, 288, 339, 444
SfaNI GCATC 1 cut(s) 524
SfcI CTRYAG 1 cut(s) 101
SfuI TTCGAA 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 442
Sse9I AATT 5 cut(s) 10, 58, 124, 301, 506
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 2 cut(s) 53, 599
TaiI ACGT 1 cut(s) 444
TaqI TCGA 1 cut(s) 307
TasI AATT 5 cut(s) 10, 58, 124, 301, 506
TfiI GAWTC 2 cut(s) 256, 373
Tru1I TTAA 4 cut(s) 84, 110, 263, 489
Tru9I TTAA 4 cut(s) 84, 110, 263, 489
TscAI CASTG 1 cut(s) 525
TspDTI ATGAA 3 cut(s) 199, 231, 326
TspGWI ACGGA 2 cut(s) 215, 227
TspRI CASTG 1 cut(s) 525
Van91I CCANNNNNTGG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.