Prupe.7G199200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011406
Physical Location & Seq
Forward (+)
18679353 .. 18682446
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G199200.3

Sequence Viewer

Length: 645 bp
ATGGACTGGGGTTCGAATGGTGAAGAACCCACTTCCTGGGAAGAGCTTTACAGTATTAATTTGATACCATCAGAGTTGTTTCTCAAGTTCCGGAAAGAAGTGCAAGGTTTAAGGGTCGGCCTCAATTTGGAGTTCTATAATGCTCCATGCAATGAGTTTCAAGGAAAGCTTGTCTTGAAGCCCTTAGCTCCTGAACGGATGTGGAAGTTCATCTATGAGCCTATCCATCAGGATGTTCGTATTCTTTCAAAAAAGATTCCTCTAACTGGATATTTGAATCTCCAGGTTGGAGTAGGCCATAATTTTCAAATGAATGCTACTGGATGGAAATGGAAACTTACTACATGTTTTGGTGGAGATGGTATATCTCGGATCCGGAATAAGACATCTCTCGGTGTGTGCCCTGGTGTGGATATGCGCTTTGGGTGGAGGGCTGATTATGTACTTCCAGAAGTTACTGGGGCTCTGGGCACTGGTGAACCATGGTTCAACATGAACTCAGGAAAGTTGCAAGCATCATTAGATAGAGTTGAGACCATTCTAACCTTTACTGACATCTACAATTTCTACAAGCCTAAAGACCAGCAGGATCAGCAGAGACCTGAAACTGATGTCACAGATGTAACTACTTATTCAAGCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.44

Weight (kDa)

5.78

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 36
AccIII TCCGGA 2 cut(s) 90, 375
AciI CCGC 1 cut(s) 639
AclWI GGATC 3 cut(s) 367, 380, 597
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 4 cut(s) 36, 127, 266, 409
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 7 cut(s) 161, 178, 249, 277, 308, 490, 636
AjnI CCWGG 3 cut(s) 35, 282, 403
AluBI AGCT 3 cut(s) 46, 169, 188
AluI AGCT 3 cut(s) 46, 169, 188
Alw26I GTCTC 2 cut(s) 527, 592
AlwI GGATC 3 cut(s) 367, 380, 597
Aor13HI TCCGGA 2 cut(s) 90, 375
AoxI GGCC 2 cut(s) 118, 295
AseI ATTAAT 1 cut(s) 57
AspLEI GCGC 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 32, 488
AsuII TTCGAA 1 cut(s) 14
BaeGI GKGCMC 2 cut(s) 404, 473
BamHI GGATCC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 466
BccI CCATC 4 cut(s) 76, 234, 318, 353
BciT130I CCWGG 3 cut(s) 37, 284, 405
BcoDI GTCTC 2 cut(s) 527, 592
Bme1390I CCNGG 3 cut(s) 37, 284, 405
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 3 cut(s) 37, 284, 405
BmrI ACTGGG 2 cut(s) 16, 468
BmsI GCATC 1 cut(s) 524
BmuI ACTGGG 2 cut(s) 16, 468
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 68
BsaI GGTCTC 2 cut(s) 527, 592
BsaJI CCNNGG 3 cut(s) 36, 403, 482
BsaWI WCCGGW 2 cut(s) 90, 375
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 127, 266, 409
Bse1I ACTGG 5 cut(s) 11, 271, 325, 463, 478
Bse3DI GCAATG 1 cut(s) 157
BseAI TCCGGA 2 cut(s) 90, 375
BseBI CCWGG 3 cut(s) 37, 284, 405
BseDI CCNNGG 3 cut(s) 36, 403, 482
BseGI GGATG 3 cut(s) 204, 238, 329
BseLI CCNNNNNNNGG 4 cut(s) 36, 127, 266, 409
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 5 cut(s) 11, 271, 325, 463, 478
BseSI GKGCMC 2 cut(s) 404, 473
BshFI GGCC 2 cut(s) 120, 297
BsiSI CCGG 2 cut(s) 91, 376
BslI CCNNNNNNNGG 4 cut(s) 36, 127, 266, 409
BsmAI GTCTC 2 cut(s) 527, 592
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 2 cut(s) 120, 297
Bso31I GGTCTC 2 cut(s) 527, 592
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 3 cut(s) 404, 466, 473
Bsp13I TCCGGA 2 cut(s) 90, 375
Bsp143I GATC 2 cut(s) 372, 589
Bsp19I CCATGG 1 cut(s) 482
BspACI CCGC 1 cut(s) 639
BspANI GGCC 2 cut(s) 120, 297
BspCNI CTCAG 1 cut(s) 512
BspEI TCCGGA 2 cut(s) 90, 375
BspLI GGNNCC 1 cut(s) 374
BspPI GGATC 3 cut(s) 367, 380, 597
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 14
BspTNI GGTCTC 2 cut(s) 527, 592
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 5 cut(s) 11, 271, 325, 463, 478
BssECI CCNNGG 3 cut(s) 36, 403, 482
BssMI GATC 2 cut(s) 372, 589
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 3 cut(s) 37, 284, 405
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 36
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 2 cut(s) 184, 499
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 3 cut(s) 204, 238, 329
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 2 cut(s) 375, 592
BstMAI GTCTC 2 cut(s) 527, 592
BstMBI GATC 2 cut(s) 372, 589
BstMWI GCNNNNNNNGC 1 cut(s) 592
BstNI CCWGG 3 cut(s) 37, 284, 405
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 3 cut(s) 35, 282, 403
BstSLI GKGCMC 2 cut(s) 404, 473
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 2 cut(s) 120, 297
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 3 cut(s) 204, 238, 329
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 443
CviAII CATG 4 cut(s) 147, 345, 483, 493
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 2 cut(s) 184, 499
DpnI GATC 2 cut(s) 374, 591
DpnII GATC 2 cut(s) 372, 589
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 466
Eco31I GGTCTC 2 cut(s) 527, 592
EcoRII CCWGG 3 cut(s) 35, 282, 403
EcoT14I CCWWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 4 cut(s) 150, 348, 486, 496
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 158, 190
FatI CATG 4 cut(s) 146, 344, 482, 492
FokI GGATG 3 cut(s) 211, 245, 336
FriOI GRGCYC 1 cut(s) 466
GlaI GCGC 1 cut(s) 419
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 120, 297
HapII CCGG 2 cut(s) 91, 376
HhaI GCGC 1 cut(s) 420
Hin1II CATG 4 cut(s) 150, 348, 486, 496
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 256, 277
HpaII CCGG 2 cut(s) 91, 376
HphI GGTGA 2 cut(s) 32, 488
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 2 cut(s) 73, 372
Hpy188III TCNNGA 7 cut(s) 91, 175, 191, 230, 376, 449, 501
Hpy8I GTNNAC 1 cut(s) 479
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 103, 150, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 592
HpyF3I CTNAG 2 cut(s) 184, 499
Hsp92II CATG 4 cut(s) 150, 348, 486, 496
HspAI GCGC 1 cut(s) 418
Kpn2I TCCGGA 2 cut(s) 90, 375
Kzo9I GATC 2 cut(s) 372, 589
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 148, 193
LweI GCATC 1 cut(s) 524
MaeIII GTNAC 3 cut(s) 454, 613, 622
MalI GATC 2 cut(s) 374, 591
MboI GATC 2 cut(s) 372, 589
MboII GAAGA 2 cut(s) 35, 53
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 3 cut(s) 404, 466, 473
MluCI AATT 4 cut(s) 58, 124, 301, 562
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 3 cut(s) 131, 270, 423
MroI TCCGGA 2 cut(s) 90, 375
MseI TTAA 2 cut(s) 57, 110
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 2 cut(s) 91, 376
MspR9I CCNGG 3 cut(s) 37, 284, 405
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 3 cut(s) 37, 284, 405
MwoI GCNNNNNNNGC 1 cut(s) 592
NcoI CCATGG 1 cut(s) 482
NdeII GATC 2 cut(s) 372, 589
NlaIII CATG 4 cut(s) 150, 348, 486, 496
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 613
NspI RCATGY 1 cut(s) 348
NspV TTCGAA 1 cut(s) 14
PciI ACATGT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 256, 277
PflMI CCANNNNNTGG 1 cut(s) 36
PscI ACATGT 1 cut(s) 344
PshBI ATTAAT 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 35, 282, 403
PspGI CCWGG 3 cut(s) 35, 282, 403
PspN4I GGNNCC 1 cut(s) 374
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 57, 110
Sau3AI GATC 2 cut(s) 372, 589
ScrFI CCNGG 3 cut(s) 37, 284, 405
SduI GDGCHC 3 cut(s) 404, 466, 473
SetI ASST 7 cut(s) 48, 109, 171, 190, 288, 548, 604
SfaNI GCATC 1 cut(s) 524
SfuI TTCGAA 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 4 cut(s) 58, 124, 301, 562
SsiI CCGC 1 cut(s) 639
StyD4I CCNGG 3 cut(s) 35, 282, 403
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 58, 124, 301, 562
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 2 cut(s) 256, 277
Tru1I TTAA 2 cut(s) 57, 110
Tru9I TTAA 2 cut(s) 57, 110
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 3 cut(s) 199, 326, 509
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 478
Van91I CCANNNNNTGG 1 cut(s) 36
VspI ATTAAT 1 cut(s) 57
XceI RCATGY 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.