pycom02g07260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011406
Physical Location & Seq
Reverse (-)
5068835 .. 5070878
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07260.4

Sequence Viewer

Length: 654 bp
ATGGATTGGGGTTCGAGTGGGGAAGAACCAACTTTGTGCGAAGAACTTTACAGTGTAAATTTGATACCGTCGGAGTTATTTTTCAAGTTCCGGAAAGAAGTGAAGGATTTAAGGGTCGGCCTCAATCTGGAGTTCTATAATGCTCCAATCAATGAATTTCAAGGAAAGATTGTATTGAAGCCGTTGGCTCCTGAACGGATTTGGAAGTTCATCTACGAGCCTATCCATCAGGATGTTCGTGTTCTTTCAAAAAAGATTCCTCTAACTGGATATCTAAATCTTCAGGTTGGCATAGGCCATAATTTTCAAATCAATGCAACCGGGTGGAAATGGAAACTTACTACTTGTTTTGGTGGAGATGGCATATCTCGGATCAGGAATAAGACATCGGTTGGCTTGGTCCCTGGTGTGGATTTGCGCTTTGGGTGGAGGGCGGATTATGTGCTTCCAGAAATCACCGGGGCGTTGGGTACTGGTGAACCGTGGTTCAACATGAACTCGGGAAAGTTGCAAGCATCACTAGATAGAGTTGAGGCCATCGTAAACTACACTGATATCTACAATTTATACAAGTCCAAAGACAAGCAGGAACAGCAGCAGAGACCTGAAACGGATGTAATTTCTTATTCCAGTCCTTCGGATCCCTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.75

Weight (kDa)

6.75

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 1 cut(s) 434
AclWI GGATC 3 cut(s) 380, 635, 648
AcsI RAATTY 2 cut(s) 58, 155
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 3 cut(s) 127, 266, 409
AgsI TTSAA 6 cut(s) 85, 161, 178, 249, 308, 490
AjnI CCWGG 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 595
AlwI GGATC 3 cut(s) 380, 635, 648
Ama87I CYCGRG 1 cut(s) 499
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 3 cut(s) 118, 295, 534
ApeKI GCWGC 1 cut(s) 595
ApoI RAATTY 2 cut(s) 58, 155
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 2 cut(s) 322, 460
AsuHPI GGTGA 2 cut(s) 448, 488
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 400
BamHI GGATCC 1 cut(s) 640
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbvI GCAGC 1 cut(s) 607
BccI CCATC 3 cut(s) 234, 353, 545
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 405
BcnI CCSGG 2 cut(s) 322, 460
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 1 cut(s) 521
BisI GCNGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 597
Bme1390I CCNGG 3 cut(s) 322, 405, 460
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 3 cut(s) 189, 402, 642
BmrFI CCNGG 3 cut(s) 322, 405, 460
BmsI GCATC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 322, 460
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 3 cut(s) 403, 459, 482
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 266, 409
Bse1I ACTGG 3 cut(s) 271, 478, 630
BseAI TCCGGA 1 cut(s) 90
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 403, 459, 482
BseGI GGATG 2 cut(s) 238, 619
BseLI CCNNNNNNNGG 3 cut(s) 127, 266, 409
BseNI ACTGG 3 cut(s) 271, 478, 630
BseXI GCAGC 1 cut(s) 607
BshFI GGCC 3 cut(s) 120, 297, 536
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 3 cut(s) 91, 321, 459
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 3 cut(s) 127, 266, 409
BsmAI GTCTC 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 3 cut(s) 120, 297, 536
Bso31I GGTCTC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 499
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 372, 640
BspACI CCGC 1 cut(s) 434
BspANI GGCC 3 cut(s) 120, 297, 536
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 189, 402, 642
BspPI GGATC 3 cut(s) 380, 635, 648
BspTNI GGTCTC 1 cut(s) 595
BsrI ACTGG 3 cut(s) 271, 478, 630
BssECI CCNNGG 3 cut(s) 403, 459, 482
BssMI GATC 2 cut(s) 372, 640
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 53, 69, 483
BstC8I GCNNGC 1 cut(s) 513
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 238, 619
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 2 cut(s) 375, 643
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 2 cut(s) 372, 640
BstMWI GCNNNNNNNGC 1 cut(s) 592
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 3 cut(s) 320, 403, 458
BstV1I GCAGC 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 3 cut(s) 120, 297, 536
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 238, 619
BtsIMutI CAGTG 2 cut(s) 58, 549
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 471
CviAII CATG 1 cut(s) 493
CviJI RGCY 7 cut(s) 120, 181, 188, 220, 297, 396, 536
CviKI_1 RGCY 7 cut(s) 120, 181, 188, 220, 297, 396, 536
CviQI GTAC 1 cut(s) 471
DpnI GATC 2 cut(s) 374, 642
DpnII GATC 2 cut(s) 372, 640
EciI GGCGGA 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 595
Eco32I GATATC 2 cut(s) 272, 556
Eco47I GGWCC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 2 cut(s) 272, 556
FaeI CATG 1 cut(s) 496
FaiI YATR 7 cut(s) 138, 293, 300, 365, 441, 494, 568
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 596
FokI GGATG 2 cut(s) 245, 626
Fsp4HI GCNGC 1 cut(s) 596
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 419
GluI GCNGC 1 cut(s) 596
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 3 cut(s) 120, 297, 536
HapII CCGG 3 cut(s) 91, 321, 459
HhaI GCGC 1 cut(s) 420
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 1 cut(s) 256
HpaII CCGG 3 cut(s) 91, 321, 459
HphI GGTGA 2 cut(s) 448, 488
Hpy166II GTNNAC 2 cut(s) 479, 544
Hpy188I TCNGA 3 cut(s) 73, 372, 640
Hpy188III TCNNGA 7 cut(s) 91, 128, 191, 230, 376, 449, 501
Hpy8I GTNNAC 2 cut(s) 479, 544
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 97, 645
HpyCH4III ACNGT 3 cut(s) 53, 69, 483
HpyCH4V TGCA 2 cut(s) 317, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 592
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 1 cut(s) 418
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 2 cut(s) 372, 640
LmnI GCTCC 2 cut(s) 148, 193
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 1 cut(s) 524
MaeI CTAG 1 cut(s) 521
MalI GATC 2 cut(s) 374, 642
MboI GATC 2 cut(s) 372, 640
MboII GAAGA 3 cut(s) 35, 53, 272
MflI RGATCY 1 cut(s) 640
MluCI AATT 5 cut(s) 58, 155, 301, 562, 618
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 4 cut(s) 131, 270, 423, 526
MroI TCCGGA 1 cut(s) 90
MseI TTAA 2 cut(s) 110, 647
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 3 cut(s) 91, 321, 459
MspR9I CCNGG 3 cut(s) 322, 405, 460
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 592
NciI CCSGG 2 cut(s) 322, 460
NdeII GATC 2 cut(s) 372, 640
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 3 cut(s) 189, 402, 642
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 189, 402, 642
PspPI GGNCC 1 cut(s) 400
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 110, 647
SatI GCNGC 1 cut(s) 596
Sau3AI GATC 2 cut(s) 372, 640
Sau96I GGNCC 1 cut(s) 400
ScrFI CCNGG 3 cut(s) 322, 405, 460
SetI ASST 2 cut(s) 288, 607
SfaNI GCATC 1 cut(s) 524
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 5 cut(s) 58, 155, 301, 562, 618
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 3 cut(s) 320, 403, 458
TaaI ACNGT 3 cut(s) 53, 69, 483
TaqI TCGA 1 cut(s) 14
TasI AATT 5 cut(s) 58, 155, 301, 562, 618
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 110, 647
Tru9I TTAA 2 cut(s) 110, 647
TscAI CASTG 2 cut(s) 58, 556
TseI GCWGC 1 cut(s) 595
TspDTI ATGAA 3 cut(s) 168, 199, 509
TspGWI ACGGA 2 cut(s) 211, 626
TspRI CASTG 2 cut(s) 58, 556
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 2 cut(s) 58, 155
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.