Rmu_sc0033193.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033193.1
OG0011406
Physical Location & Seq
Reverse (-)
1 .. 753
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033193.1_g000001.1.cds

Sequence Viewer

Length: 378 bp
tatggttgtcctagcatcttcaactattgatgtggtccttttggttcagttctataatgctccaatcaatgagtatcaagcaaagattgtgttgaagcccttagctccggatcggaggtggaagttcatctatgagcctatccgtcaagatgtccgtgttctttcaaagaagattcctctaactaactttctaaatcttcaggttggcgttggccataattttcgaatgaatgcaactggatggaaatggaagcttactacatgttttggtggagatggcatatctcggattcggaataagacatcacttggcgtatgccctggtgtagatttgcgctttgggtggagggcggattatgtacttccagaagttactgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

9.88

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06010
fragaria_vesca FvH4_1g08630 FvH4_1g08630
malus_domestica MD02G1091100.v1.1 MD15G1217300.v1.1
prunus_persica Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1 Prupe.7G199200_v2.0.a1
pyrus_communis pycom02g07260 pycom15g19290
rosa_chinensis RchiOBHm_Chr2g0094901
rosa_laevigata RLG00000016529
rosa_multiflora Rmu_sc0033193.1_g000001
rosa_roxburghii Rroxscaffold_2G00146790
rosa_rugosa Rorug02G0048800
rosa_samantha Rh2AG095300 Rh2BG096300 Rh2CG098300 Rh2DG095000
rosa_wichuraiana Rw2G007170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 107
AciI CCGC 1 cut(s) 351
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 22, 95, 166
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 2 cut(s) 105, 254
AluI AGCT 2 cut(s) 105, 254
AlwI GGATC 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 35
AsuII TTCGAA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 214
BccI CCATC 2 cut(s) 235, 270
BciT130I CCWGG 1 cut(s) 322
BfaI CTAG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 107
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 242
BshFI GGCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 108
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 224
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 1 cut(s) 351
BspANI GGCC 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 107
BspPI GGATC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 224
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 322
BstBI TTCGAA 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 320
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 246
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 360
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 98, 105, 137, 214, 254
CviKI_1 RGCY 5 cut(s) 98, 105, 137, 214, 254
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 212
EciI GGCGGA 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 320
FaeI CATG 1 cut(s) 265
FaiI YATR 8 cut(s) 3, 55, 133, 217, 263, 282, 317, 358
FatI CATG 1 cut(s) 261
FokI GGATG 1 cut(s) 253
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 337
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 2 cut(s) 173, 290
HpaII CCGG 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 115, 289, 295
Hpy188III TCNNGA 3 cut(s) 108, 147, 366
HpyCH4V TGCA 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 1 cut(s) 335
Kpn2I TCCGGA 1 cut(s) 107
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 65, 110
LpnPI CCDG 6 cut(s) 121, 186, 223, 307, 334, 361
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 371
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 3 cut(s) 10, 182, 189
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 214
MnlI CCTC 3 cut(s) 109, 187, 340
Mox20I TGGCCA 1 cut(s) 214
MroI TCCGGA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 214
Msp20I TGGCCA 1 cut(s) 214
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 1 cut(s) 322
NdeII GATC 1 cut(s) 110
NlaIII CATG 1 cut(s) 265
NspI RCATGY 1 cut(s) 265
NspV TTCGAA 1 cut(s) 224
PciI ACATGT 1 cut(s) 261
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 173, 290
PscI ACATGT 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 1 cut(s) 35
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 322
SetI ASST 4 cut(s) 107, 120, 205, 256
SfaNI GCATC 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 224
SinI GGWCC 1 cut(s) 35
Sse9I AATT 1 cut(s) 218
SsiI CCGC 1 cut(s) 351
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 320
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 2 cut(s) 173, 290
TspDTI ATGAA 2 cut(s) 116, 243
TspGWI ACGGA 2 cut(s) 132, 144
VpaK11BI GGWCC 1 cut(s) 35
XceI RCATGY 1 cut(s) 265
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.