AT2G07689

ATP synthesis coupled electron transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010702
Physical Location & Seq
Forward (+)
3336109 .. 3336753
645 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07689.1

Sequence Viewer

Length: 645 bp
ATGTGGGCACCAGATATCTATGAGGGTTCACCCACCCCGGTTACAGCATTCCTTTCTATTGCGCCTAAAATCTCTATTTCTGCTAATATTTTACGTGTTTCTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTTCTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAACGAAAGTCAAAAGACCTCTAGCTCATAGTTCAATTGGACATGTAGGTTATATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACTAATTGGTATCTTTATTTATGCATTAATGACGATGGATGCATTCGCCATAGTTTCAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCTCTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTTCTCATACGCAGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTTCTAGCCCCAGTGGGAGTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAATAAGTAAGTTTGGAGGACCGAAGGCAGTTCTCCGTGCACCGGACACGTAG

Protein Analysis

214

Amino Acids

22.74

Weight (kDa)

9.79

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 1 - 189 3e-53 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AciI CCGC 4 cut(s) 183, 383, 507, 575
AcoI YGGCCR 2 cut(s) 180, 576
AcsI RAATTY 2 cut(s) 282, 488
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 473, 634
AflIII ACRYGT 3 cut(s) 94, 235, 639
AgsI TTSAA 2 cut(s) 228, 287
AluBI AGCT 2 cut(s) 122, 218
AluI AGCT 2 cut(s) 122, 218
Alw21I GWGCWC 2 cut(s) 178, 634
Alw44I GTGCAC 1 cut(s) 630
AoxI GGCC 3 cut(s) 180, 189, 576
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 282, 488
AseI ATTAAT 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 2 cut(s) 64, 395
AspS9I GGNCC 2 cut(s) 190, 611
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 21
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 2 cut(s) 10, 634
BanI GGYRCC 1 cut(s) 7
Bbv12I GWGCWC 2 cut(s) 178, 634
BbvI GCAGC 1 cut(s) 162
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 374
BcnI CCSGG 1 cut(s) 38
BfaI CTAG 4 cut(s) 215, 398, 533, 555
BfmI CTRYAG 1 cut(s) 148
BfoI RGCGCY 1 cut(s) 396
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 4 cut(s) 151, 183, 507, 576
BlsI GCNGC 4 cut(s) 152, 184, 508, 577
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 190, 611
BmiI GGNNCC 3 cut(s) 9, 112, 271
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 2 cut(s) 95, 642
BsaJI CCNNGG 2 cut(s) 36, 186
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 634
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 3 cut(s) 183, 259, 539
Bse3DI GCAATG 2 cut(s) 125, 153
BseDI CCNNGG 2 cut(s) 36, 186
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 473, 634
BseMI GCAATG 2 cut(s) 125, 153
BseNI ACTGG 3 cut(s) 183, 259, 539
BseSI GKGCMC 2 cut(s) 10, 634
BseX3I CGGCCG 1 cut(s) 576
BseXI GCAGC 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 3 cut(s) 182, 191, 578
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 2 cut(s) 178, 634
BsiSI CCGG 4 cut(s) 38, 474, 579, 635
BslI CCNNNNNNNGG 2 cut(s) 473, 634
BsmI GAATGC 2 cut(s) 47, 335
BsnI GGCC 3 cut(s) 182, 191, 578
Bsp1286I GDGCHC 3 cut(s) 10, 178, 634
Bsp143I GATC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 4 cut(s) 183, 383, 507, 575
BspANI GGCC 3 cut(s) 182, 191, 578
BspLI GGNNCC 3 cut(s) 9, 112, 271
BspMAI CTGCAG 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 2 cut(s) 125, 153
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 3 cut(s) 183, 259, 539
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 2 cut(s) 36, 186
BssMI GATC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 186
BstBAI YACGTR 2 cut(s) 95, 642
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 169
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 2 cut(s) 64, 395
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 3 cut(s) 182, 188, 483
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 148
BstSLI GKGCMC 2 cut(s) 10, 634
BstV1I GCAGC 1 cut(s) 162
BstZI CGGCCG 1 cut(s) 576
BsuRI GGCC 3 cut(s) 182, 191, 578
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 176, 546
Cac8I GCNNGC 1 cut(s) 475
CfoI GCGC 2 cut(s) 64, 395
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 190, 611
Csp6I GTAC 1 cut(s) 252
CviAII CATG 3 cut(s) 187, 236, 264
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EaeI YGGCCR 2 cut(s) 180, 576
EagI CGGCCG 1 cut(s) 576
EclXI CGGCCG 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 186
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 611
Eco52I CGGCCG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 282
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 2 cut(s) 319, 337
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 190, 239, 267
FatI CATG 3 cut(s) 186, 235, 263
Fnu4HI GCNGC 4 cut(s) 151, 183, 507, 576
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 4 cut(s) 151, 183, 507, 576
FspBI CTAG 4 cut(s) 215, 398, 533, 555
GlaI GCGC 2 cut(s) 63, 394
GluI GCNGC 4 cut(s) 151, 183, 507, 576
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 3 cut(s) 182, 191, 578
HapII CCGG 4 cut(s) 38, 474, 579, 635
HhaI GCGC 2 cut(s) 64, 395
Hin1II CATG 3 cut(s) 190, 239, 267
Hin6I GCGC 2 cut(s) 62, 393
HinP1I GCGC 2 cut(s) 62, 393
HinfI GANTC 1 cut(s) 409
HpaII CCGG 4 cut(s) 38, 474, 579, 635
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 29, 632
Hpy8I GTNNAC 2 cut(s) 29, 632
HpyAV CCTTC 4 cut(s) 272, 439, 576, 610
HpyCH4IV ACGT 2 cut(s) 94, 641
HpyCH4V TGCA 5 cut(s) 130, 150, 317, 335, 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 188, 483
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 2 cut(s) 94, 641
Hsp92II CATG 3 cut(s) 190, 239, 267
HspAI GCGC 2 cut(s) 62, 393
KroI GCCGGC 1 cut(s) 473
KroNI GCCGGC 1 cut(s) 475
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 119, 173
LpnPI CCDG 8 cut(s) 24, 51, 164, 240, 441, 487, 552, 592
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 322
MaeI CTAG 4 cut(s) 215, 398, 533, 555
MaeII ACGT 2 cut(s) 94, 641
MaeIII GTNAC 2 cut(s) 40, 550
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 130, 493
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 3 cut(s) 10, 178, 634
MluCI AATT 4 cut(s) 228, 282, 297, 488
MnlI CCTC 3 cut(s) 16, 222, 602
Mph1103I ATGCAT 2 cut(s) 319, 337
MroNI GCCGGC 1 cut(s) 473
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 440
MspI CCGG 4 cut(s) 38, 474, 579, 635
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 2 cut(s) 47, 335
MwoI GCNNNNNNNGC 3 cut(s) 182, 188, 483
NaeI GCCGGC 1 cut(s) 475
NciI CCSGG 1 cut(s) 38
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 165
NgoMIV GCCGGC 1 cut(s) 473
NlaIII CATG 3 cut(s) 190, 239, 267
NlaIV GGNNCC 3 cut(s) 9, 112, 271
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 2 cut(s) 319, 337
NspI RCATGY 1 cut(s) 239
PciI ACATGT 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 364
PctI GAATGC 2 cut(s) 47, 335
PdiI GCCGGC 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 409
PkrI GCNGC 4 cut(s) 152, 184, 508, 577
Ppu21I YACGTR 2 cut(s) 95, 642
PscI ACATGT 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 9, 112, 271
PspPI GGNCC 2 cut(s) 190, 611
PstI CTGCAG 1 cut(s) 152
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 4 cut(s) 151, 183, 507, 576
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 2 cut(s) 190, 611
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 3 cut(s) 10, 178, 634
SetI ASST 9 cut(s) 97, 124, 214, 220, 244, 431, 568, 587, 644
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 148
SfiI GGCCNNNNNGGCC 1 cut(s) 188
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 4 cut(s) 228, 282, 297, 488
SsiI CCGC 4 cut(s) 183, 383, 507, 575
SspI AATATT 1 cut(s) 88
SspMI CTAG 4 cut(s) 215, 398, 533, 555
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 2 cut(s) 97, 644
TaqII GACCGA 1 cut(s) 628
TasI AATT 4 cut(s) 228, 282, 297, 488
TauI GCSGC 3 cut(s) 185, 509, 578
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 2 cut(s) 183, 546
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 550
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 2 cut(s) 183, 546
VneI GTGCAC 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 611
VspI ATTAAT 1 cut(s) 320
XapI RAATTY 2 cut(s) 282, 488
XceI RCATGY 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 4 cut(s) 215, 398, 533, 555
Zsp2I ATGCAT 2 cut(s) 319, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.