Rroxscaffold_5G00384960

NAD(P)H-quinone oxidoreductase subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010702
Physical Location & Seq
Reverse (-)
64154705 .. 64156610
1906 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00384960.1

Sequence Viewer

Length: 387 bp
ATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCGTATTCGTCCATAGGTCAAATTGGATATGTAATTATTGAAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTATCATTTGGTCTATGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAGGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTCGGAAAACTTAATTTATTCTGTGTGGATAGCAGGCAGGCCTATATTTCTTGGTTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03010 map00190 map01100 map03010
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

128

Amino Acids

13.94

Weight (kDa)

5.98

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 1 - 116 8.5e-37 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AclWI GGATC 2 cut(s) 248, 261
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 95, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
Alw26I GTCTC 2 cut(s) 102, 290
AlwI GGATC 2 cut(s) 248, 261
AoxI GGCC 1 cut(s) 363
AxyI CCTNAGG 1 cut(s) 295
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 102, 290
BfaI CTAG 2 cut(s) 170, 314
BfuAI ACCTGC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse21I CCTNAGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 18
BshFI GGCC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 102, 290
BsnI GGCC 1 cut(s) 365
Bsp143I GATC 1 cut(s) 253
BspANI GGCC 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 2 cut(s) 248, 261
BsrDI GCAATG 1 cut(s) 18
BssMI GATC 1 cut(s) 253
BstC8I GCNNGC 5 cut(s) 54, 130, 184, 359, 363
BstDEI CTNAG 1 cut(s) 295
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 2 cut(s) 102, 290
BstMBI GATC 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 295
BsuRI GGCC 1 cut(s) 365
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 5 cut(s) 54, 130, 184, 359, 363
Csp6I GTAC 1 cut(s) 207
CviAII CATG 3 cut(s) 40, 133, 163
CviJI RGCY 3 cut(s) 266, 278, 365
CviKI_1 RGCY 3 cut(s) 266, 278, 365
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 295
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eco147I AGGCCT 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 295
FaeI CATG 3 cut(s) 43, 136, 166
FatI CATG 3 cut(s) 39, 132, 162
FspBI CTAG 2 cut(s) 170, 314
HaeIII GGCC 1 cut(s) 365
HapII CCGG 1 cut(s) 210
Hin1II CATG 3 cut(s) 43, 136, 166
HinfI GANTC 3 cut(s) 13, 110, 166
HpaII CCGG 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 128, 186, 236
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 3 cut(s) 43, 136, 166
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 5 cut(s) 222, 223, 303, 343, 347
MaeI CTAG 2 cut(s) 170, 314
MaeII ACGT 1 cut(s) 46
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 1 cut(s) 296
MflI RGATCY 1 cut(s) 253
MluCI AATT 4 cut(s) 75, 87, 99, 337
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 2 cut(s) 293, 318
MseI TTAA 1 cut(s) 336
MspI CCGG 1 cut(s) 210
NdeII GATC 1 cut(s) 253
NlaIII CATG 3 cut(s) 43, 136, 166
NlaIV GGNNCC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 365
PfeI GAWTC 2 cut(s) 13, 166
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 1 cut(s) 104
SetI ASST 4 cut(s) 49, 73, 304, 322
Sse9I AATT 4 cut(s) 75, 87, 99, 337
SseBI AGGCCT 1 cut(s) 365
SspMI CTAG 2 cut(s) 170, 314
StuI AGGCCT 1 cut(s) 365
TaiI ACGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 226
TasI AATT 4 cut(s) 75, 87, 99, 337
TfiI GAWTC 2 cut(s) 13, 166
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 56, 179
XspI CTAG 2 cut(s) 170, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.