RCHIOBHM_CPG0501771

NAD(P)H-quinone oxidoreductase subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Pt
OG0010702
Physical Location & Seq
Forward (+)
15952 .. 16766
815 bp
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UTR
Exon/CDS
Intron
PRQ15673

Sequence Viewer

Length: 615 bp
ATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCGTATTCGTCCATAGGTCAAATTGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAGGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTCGGAAAACTGAATTTATTCTGGTGTGGATGGCAGGCAGGCCTATATTTCTTGGTTTCAATAGGACTCCTTACAAGCGTTGTTTCTATCTACTATTATCTAAAAATAATCAAGTTATTAATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCCCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGAAATTGCTCAGGATACCCTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03010 map00190 map01100 map03010
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

204

Amino Acids

22.42

Weight (kDa)

9.08

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 1 - 136 6.8e-42 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 202
AclWI GGATC 3 cut(s) 248, 261, 489
AcsI RAATTY 1 cut(s) 337
AcvI CACGTG 1 cut(s) 478
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 384, 590
AjnI CCWGG 1 cut(s) 562
Alw26I GTCTC 2 cut(s) 102, 290
AlwI GGATC 3 cut(s) 248, 261, 489
AoxI GGCC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 337
AseI ATTAAT 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 295
BamHI GGATCC 1 cut(s) 253
BbrPI CACGTG 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 296
BccI CCATC 2 cut(s) 348, 527
BciT130I CCWGG 1 cut(s) 564
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 102, 290
BfaI CTAG 2 cut(s) 170, 314
BfuAI ACCTGC 1 cut(s) 308
BfuI GTATCC 1 cut(s) 595
Bme1390I CCNGG 1 cut(s) 564
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 597
BsaAI YACGTR 2 cut(s) 206, 478
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 454
Bse21I CCTNAGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 564
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 454
BshFI GGCC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 102, 290
BsnI GGCC 1 cut(s) 366
Bsp143I GATC 3 cut(s) 253, 494, 506
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 610
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 3 cut(s) 248, 261, 489
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 454
BssMI GATC 3 cut(s) 253, 494, 506
Bst2UI CCWGG 1 cut(s) 564
BstBAI YACGTR 2 cut(s) 206, 478
BstC8I GCNNGC 5 cut(s) 54, 130, 184, 360, 364
BstDEI CTNAG 2 cut(s) 295, 597
BstF5I GGATG 1 cut(s) 359
BstKTI GATC 3 cut(s) 256, 497, 509
BstMAI GTCTC 2 cut(s) 102, 290
BstMBI GATC 3 cut(s) 253, 494, 506
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstSNI TACGTA 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 2 cut(s) 253, 494
BstYI RGATCY 2 cut(s) 253, 494
Bsu36I CCTNAGG 1 cut(s) 295
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 1 cut(s) 359
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 5 cut(s) 54, 130, 184, 360, 364
Csp6I GTAC 1 cut(s) 207
CviAII CATG 3 cut(s) 40, 133, 163
CviJI RGCY 3 cut(s) 266, 278, 366
CviKI_1 RGCY 3 cut(s) 266, 278, 366
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 2 cut(s) 295, 597
DpnI GATC 3 cut(s) 255, 496, 508
DpnII GATC 3 cut(s) 253, 494, 506
Eco105I TACGTA 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 366
Eco72I CACGTG 1 cut(s) 478
Eco81I CCTNAGG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 562
FaeI CATG 3 cut(s) 43, 136, 166
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FatI CATG 3 cut(s) 39, 132, 162
FblI GTMKAC 1 cut(s) 202
FokI GGATG 1 cut(s) 366
FspBI CTAG 2 cut(s) 170, 314
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 210
Hin1II CATG 3 cut(s) 43, 136, 166
HinfI GANTC 4 cut(s) 13, 110, 166, 390
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 2 cut(s) 227, 599
Hpy8I GTNNAC 1 cut(s) 203
HpyCH4IV ACGT 3 cut(s) 46, 205, 477
HpyCH4V TGCA 3 cut(s) 128, 186, 236
HpyF3I CTNAG 2 cut(s) 295, 597
HpySE526I ACGT 3 cut(s) 46, 205, 477
Hsp92II CATG 3 cut(s) 43, 136, 166
Kzo9I GATC 3 cut(s) 253, 494, 506
LweI GCATC 1 cut(s) 560
MaeI CTAG 2 cut(s) 170, 314
MaeII ACGT 3 cut(s) 46, 205, 477
MalI GATC 3 cut(s) 255, 496, 508
MboI GATC 3 cut(s) 253, 494, 506
MboII GAAGA 2 cut(s) 296, 504
MflI RGATCY 2 cut(s) 253, 494
MluCI AATT 8 cut(s) 75, 87, 99, 337, 484, 514, 524, 591
MlyI GAGTC 2 cut(s) 104, 384
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 3 cut(s) 293, 318, 483
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 2 cut(s) 443, 503
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 564
NdeII GATC 3 cut(s) 253, 494, 506
NlaIII CATG 3 cut(s) 43, 136, 166
NlaIV GGNNCC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 13, 166
PleI GAGTC 2 cut(s) 104, 384
PmaCI CACGTG 1 cut(s) 478
PmlI CACGTG 1 cut(s) 478
PpsI GAGTC 2 cut(s) 104, 384
Ppu21I YACGTR 2 cut(s) 206, 478
PshBI ATTAAT 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 562
PspCI CACGTG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 2 cut(s) 253, 494
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 443, 503
Sau3AI GATC 3 cut(s) 253, 494, 506
SchI GAGTC 2 cut(s) 104, 384
ScrFI CCNGG 1 cut(s) 564
SetI ASST 6 cut(s) 49, 73, 208, 304, 322, 480
SfaNI GCATC 1 cut(s) 560
SnaBI TACGTA 1 cut(s) 206
Sse9I AATT 8 cut(s) 75, 87, 99, 337, 484, 514, 524, 591
SseBI AGGCCT 1 cut(s) 366
SspMI CTAG 2 cut(s) 170, 314
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 562
TaiI ACGT 3 cut(s) 49, 208, 480
TaqI TCGA 2 cut(s) 226, 522
TasI AATT 8 cut(s) 75, 87, 99, 337, 484, 514, 524, 591
TfiI GAWTC 2 cut(s) 13, 166
Tru1I TTAA 2 cut(s) 443, 503
Tru9I TTAA 2 cut(s) 443, 503
TspDTI ATGAA 3 cut(s) 56, 179, 590
VspI ATTAAT 1 cut(s) 443
XapI RAATTY 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 2 cut(s) 170, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.