Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010702

Physical Location & Seq

Genomic Coordinates Reverse (-)

1238029 .. 1239443

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGACGATAGATGCATTCGCCATAGTTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCTTTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCGCCATTACTATGTTCTCATACGCAGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGAGTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGTAAGTAAGTTTGGGGGACCGAAGTTGACCTTAGGTGTAATAGGGACTCCCAGTTACTGTGCGCGATCGTATACTGGGGTGCTCCCCGCCGGTTGTTGGAACGACGCGAGCCGGGCCGGGCCTCGATTCAGAAAGATGAAGGGCCAAAAAAACGGCGAAGTCCATCCGAACCGTCCAATGAAGAATAAAGAGGAGAGCAAAGCGCCAATGGCACGCGAAGCGCATGCGGAACGGGCACGGAGAAAAAAAAGTGTGGAGGAGAAGCAGCCGAGCTCATTCCCTTCGCTTCCTGGGCCCAAAGCACCGGGAAGGGGCCTAGAAGTGCCTACTACTACACCATACTACACTTGGCTCTACACATTTACAGAGCTAACCCCTGTCCGCGGAGCTAAGGGGGCTTCAATCCTTATTCCTTATCCCCCCGGGCCTTACTTATTCAGGGGAGAGAGTAGAGCCTCGAGAAGCACTGTTGAGAGGAAGGGCAGTTACACTGCTCCTCTTCATTCTCTACAGGGTTCCAACCCTTTCTTCAACATAGGTGACAACGAGCGGGGCAGAGATGGAAGAGATCGAACACGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

286

Amino Acids

31.08

Weight (kDa)

10.2

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proton_antipo_M	PF00361	2 - 82	7.7e-17	NADH:quinone oxidoreductase/Mrp antiporter, TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07689
pyrus_communis	pycom12397g00060 pycom12397g00140 pycom461g00180
rosa_chinensis	RchiOBHm_Chr2g0118411 RchiOBHm_Chr4g0390051 RchiOBHm_Chr5g0051111 RchiOBHm_CPg0501771 RchiOBHm_CPg0502641 RchiOBHm_MTg0498511
rosa_laevigata	RLG00000000025 RLG00000000462 RLG00000000501 RLG00000030293
rosa_roxburghii	Rroxscaffold_5G00384960
rosa_samantha	Rh1BG209400 Rh1CG032200 Rh1DG236000 Rh5BG348100 Rh5DG361000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	344
AccII	CGCG	4 cut(s)	337, 380, 489, 657
AciI	CCGC	8 cut(s)	62, 186, 254, 360, 500, 655, 657, 823
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	167
AfiI	CCNNNNNNNGG	4 cut(s)	152, 369, 584, 656
AgsI	TTSAA	2 cut(s)	675, 805
AjnI	CCWGG	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AluBI	AGCT	3 cut(s)	546, 643, 662
AluI	AGCT	3 cut(s)	546, 643, 662
Alw21I	GWGCWC	2 cut(s)	357, 548
AlwNI	CAGNNNCTG	1 cut(s)	330
Ama87I	CYCGRG	2 cut(s)	695, 730
AoxI	GGCC	7 cut(s)	255, 387, 392, 415, 566, 586, 698
ApaI	GGGCCC	1 cut(s)	570
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	4 cut(s)	74, 337, 478, 496
AspS9I	GGNCC	8 cut(s)	290, 387, 392, 415, 566, 567, 586, 698
AsuC2I	CCSGG	5 cut(s)	386, 391, 579, 696, 697
AsuHPI	GGTGA	1 cut(s)	824
AvaI	CYCGRG	2 cut(s)	695, 730
AvaII	GGWCC	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	304
BaeGI	GKGCMC	2 cut(s)	511, 570
BanII	GRGCYC	2 cut(s)	548, 570
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BauI	CACGAG	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	357, 548
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	444, 827
BceAI	ACGGC	2 cut(s)	53, 442
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	5 cut(s)	386, 391, 579, 696, 697
BfaI	CTAG	3 cut(s)	212, 234, 590
BfmI	CTRYAG	1 cut(s)	782
BfoI	RGCGCY	2 cut(s)	75, 479
BisI	GCNGC	3 cut(s)	186, 255, 539
BlsI	GCNGC	3 cut(s)	187, 256, 540
Bme1390I	CCNGG	6 cut(s)	386, 391, 564, 579, 696, 697
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	2 cut(s)	695, 730
BmgT120I	GGNCC	8 cut(s)	290, 387, 392, 415, 566, 567, 586, 698
BmiI	GGNNCC	4 cut(s)	291, 568, 587, 790
BmrFI	CCNGG	6 cut(s)	386, 391, 564, 579, 696, 697
BmrI	ACTGGG	3 cut(s)	212, 318, 357
BmuI	ACTGGG	3 cut(s)	212, 318, 357
Bpu10I	CCTNAGC	1 cut(s)	663
BpuMI	CCSGG	5 cut(s)	386, 391, 579, 696, 697
BsaJI	CCNNGG	4 cut(s)	563, 655, 694, 695
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 369, 584, 656
Bse118I	RCCGGY	2 cut(s)	152, 362
Bse1I	ACTGG	3 cut(s)	218, 324, 352
Bse21I	CCTNAGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	4 cut(s)	563, 655, 694, 695
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	4 cut(s)	152, 369, 584, 656
BseNI	ACTGG	3 cut(s)	218, 324, 352
BseRI	GAGGAG	3 cut(s)	479, 545, 759
BseSI	GKGCMC	2 cut(s)	511, 570
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	4 cut(s)	337, 380, 489, 657
Bsh1285I	CGRYCG	2 cut(s)	258, 341
BshFI	GGCC	7 cut(s)	257, 389, 394, 417, 568, 588, 700
BsiEI	CGRYCG	2 cut(s)	258, 341
BsiHKAI	GWGCWC	2 cut(s)	357, 548
BsiHKCI	CYCGRG	2 cut(s)	695, 730
BsiSI	CCGG	7 cut(s)	153, 258, 363, 385, 390, 578, 696
BslFI	GGGAC	2 cut(s)	303, 331
BslI	CCNNNNNNNGG	4 cut(s)	152, 369, 584, 656
BsmFI	GGGAC	2 cut(s)	303, 331
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	7 cut(s)	257, 389, 394, 417, 568, 588, 700
BsoBI	CYCGRG	2 cut(s)	695, 730
Bsp120I	GGGCCC	1 cut(s)	566
Bsp1286I	GDGCHC	4 cut(s)	357, 511, 548, 570
Bsp143I	GATC	2 cut(s)	338, 841
BspACI	CCGC	8 cut(s)	62, 186, 254, 360, 500, 655, 657, 823
BspANI	GGCC	7 cut(s)	257, 389, 394, 417, 568, 588, 700
BspFNI	CGCG	4 cut(s)	337, 380, 489, 657
BspLI	GGNNCC	4 cut(s)	291, 568, 587, 790
BsrBI	CCGCTC	1 cut(s)	823
BsrFI	RCCGGY	2 cut(s)	152, 362
BsrI	ACTGG	3 cut(s)	218, 324, 352
BssAI	RCCGGY	2 cut(s)	152, 362
BssECI	CCNNGG	4 cut(s)	563, 655, 694, 695
BssMI	GATC	2 cut(s)	338, 841
BssNAI	GTATAC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	270
Bst1107I	GTATAC	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	332, 446, 742
Bst6I	CTCTTC	2 cut(s)	777, 832
BstC8I	GCNNGC	4 cut(s)	154, 382, 487, 498
BstDEI	CTNAG	2 cut(s)	304, 663
BstDSI	CCRYGG	1 cut(s)	655
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	4 cut(s)	337, 380, 489, 657
BstH2I	RGCGCY	2 cut(s)	75, 479
BstHHI	GCGC	4 cut(s)	74, 337, 478, 496
BstKTI	GATC	2 cut(s)	341, 844
BstMBI	GATC	2 cut(s)	338, 841
BstMCI	CGRYCG	2 cut(s)	258, 341
BstMWI	GCNNNNNNNGC	7 cut(s)	162, 386, 482, 491, 506, 565, 668
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	6 cut(s)	384, 389, 562, 577, 694, 695
BstSFI	CTRYAG	1 cut(s)	782
BstSLI	GKGCMC	2 cut(s)	511, 570
BstUI	CGCG	4 cut(s)	337, 380, 489, 657
BstV1I	GCAGC	1 cut(s)	550
BstZ17I	GTATAC	1 cut(s)	345
BstZI	CGGCCG	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	304
BsuRI	GGCC	7 cut(s)	257, 389, 394, 417, 568, 588, 700
BtgI	CCRYGG	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	3 cut(s)	225, 738, 762
Cac8I	GCNNGC	4 cut(s)	154, 382, 487, 498
CaiI	CAGNNNCTG	1 cut(s)	330
CfoI	GCGC	4 cut(s)	74, 337, 478, 496
Cfr10I	RCCGGY	2 cut(s)	152, 362
Cfr13I	GGNCC	8 cut(s)	290, 387, 392, 415, 566, 567, 586, 698
Cfr42I	CCGCGG	1 cut(s)	658
Cfr9I	CCCGGG	1 cut(s)	695
CseI	GACGC	1 cut(s)	386
CviAII	CATG	1 cut(s)	497
DdeI	CTNAG	2 cut(s)	304, 663
DpnI	GATC	2 cut(s)	340, 843
DpnII	GATC	2 cut(s)	338, 841
EaeI	YGGCCR	1 cut(s)	255
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	777, 832
EarI	CTCTTC	2 cut(s)	777, 832
Ecl136II	GAGCTC	1 cut(s)	546
EclXI	CGGCCG	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	548, 570
Eco47I	GGWCC	1 cut(s)	290
Eco52I	CGGCCG	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	546
Eco81I	CCTNAGG	1 cut(s)	304
Eco88I	CYCGRG	2 cut(s)	695, 730
EcoICRI	GAGCTC	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	2 cut(s)	548, 570
FaeI	CATG	1 cut(s)	500
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	2 cut(s)	303, 331
FatI	CATG	1 cut(s)	496
FauI	CCCGC	2 cut(s)	367, 816
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	3 cut(s)	186, 255, 539
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	2 cut(s)	548, 570
Fsp4HI	GCNGC	3 cut(s)	186, 255, 539
FspBI	CTAG	3 cut(s)	212, 234, 590
GlaI	GCGC	4 cut(s)	73, 336, 477, 495
GluI	GCNGC	3 cut(s)	186, 255, 539
HaeII	RGCGCY	2 cut(s)	75, 479
HaeIII	GGCC	7 cut(s)	257, 389, 394, 417, 568, 588, 700
HapII	CCGG	7 cut(s)	153, 258, 363, 385, 390, 578, 696
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	4 cut(s)	74, 337, 478, 496
Hin1II	CATG	1 cut(s)	500
Hin6I	GCGC	4 cut(s)	72, 335, 476, 494
HinP1I	GCGC	4 cut(s)	72, 335, 476, 494
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	88, 319, 399
HpaII	CCGG	7 cut(s)	153, 258, 363, 385, 390, 578, 696
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	2 cut(s)	300, 345
Hpy188I	TCNGA	2 cut(s)	404, 441
Hpy188III	TCNNGA	1 cut(s)	732
Hpy8I	GTNNAC	2 cut(s)	300, 345
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	6 cut(s)	118, 255, 406, 564, 576, 745
HpyCH4III	ACNGT	3 cut(s)	332, 446, 742
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	7 cut(s)	162, 386, 482, 491, 506, 565, 668
HpyF3I	CTNAG	2 cut(s)	304, 663
Hsp92II	CATG	1 cut(s)	500
HspAI	GCGC	4 cut(s)	72, 335, 476, 494
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	658
Kzo9I	GATC	2 cut(s)	338, 841
LmnI	GCTCC	3 cut(s)	360, 659, 772
Lsp1109I	GCAGC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	212, 234, 590
MaeIII	GTNAC	4 cut(s)	229, 326, 758, 812
MalI	GATC	2 cut(s)	340, 843
MbiI	CCGCTC	1 cut(s)	823
MboI	GATC	2 cut(s)	338, 841
MboII	GAAGA	5 cut(s)	172, 466, 764, 793, 849
MhlI	GDGCHC	4 cut(s)	357, 511, 548, 570
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	350, 816
MnlI	CCTC	6 cut(s)	405, 457, 523, 739, 741, 780
Mph1103I	ATGCAT	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	7 cut(s)	153, 258, 363, 385, 390, 578, 696
MspR9I	CCNGG	6 cut(s)	386, 391, 564, 579, 696, 697
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	4 cut(s)	337, 380, 489, 657
MwoI	GCNNNNNNNGC	7 cut(s)	162, 386, 482, 491, 506, 565, 668
NaeI	GCCGGC	1 cut(s)	154
NciI	CCSGG	5 cut(s)	386, 391, 579, 696, 697
NdeII	GATC	2 cut(s)	338, 841
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	4 cut(s)	291, 568, 587, 790
NmeAIII	GCCGAG	1 cut(s)	567
NmuCI	GTSAC	2 cut(s)	229, 812
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	14
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	88, 399
PkrI	GCNGC	3 cut(s)	187, 256, 540
Ple19I	CGATCG	1 cut(s)	341
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	4 cut(s)	291, 568, 587, 790
PspOMI	GGGCCC	1 cut(s)	566
PspPI	GGNCC	8 cut(s)	290, 387, 392, 415, 566, 567, 586, 698
PstNI	CAGNNNCTG	1 cut(s)	330
PvuI	CGATCG	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	548
SacII	CCGCGG	1 cut(s)	658
SatI	GCNGC	3 cut(s)	186, 255, 539
Sau3AI	GATC	2 cut(s)	338, 841
Sau96I	GGNCC	8 cut(s)	290, 387, 392, 415, 566, 567, 586, 698
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	6 cut(s)	386, 391, 564, 579, 696, 697
SduI	GDGCHC	4 cut(s)	357, 511, 548, 570
SetI	ASST	9 cut(s)	110, 247, 266, 305, 310, 548, 645, 664, 814
SfcI	CTRYAG	1 cut(s)	782
Sfr274I	CTCGAG	1 cut(s)	730
Sfr303I	CCGCGG	1 cut(s)	658
SgrBI	CCGCGG	1 cut(s)	658
SinI	GGWCC	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	730
SmaI	CCCGGG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	8 cut(s)	62, 186, 254, 360, 500, 655, 657, 823
SspMI	CTAG	3 cut(s)	212, 234, 590
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	6 cut(s)	384, 389, 562, 577, 694, 695
TaaI	ACNGT	3 cut(s)	332, 446, 742
TaqI	TCGA	3 cut(s)	397, 731, 844
TaqII	GACCGA	1 cut(s)	307
TasI	AATT	1 cut(s)	167
TauI	GCSGC	2 cut(s)	188, 257
TfiI	GAWTC	2 cut(s)	88, 399
TscAI	CASTG	3 cut(s)	225, 745, 769
TseFI	GTSAC	2 cut(s)	229, 812
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	2 cut(s)	229, 812
TspDTI	ATGAA	3 cut(s)	425, 467, 764
TspGWI	ACGGA	1 cut(s)	526
TspMI	CCCGGG	1 cut(s)	695
TspRI	CASTG	3 cut(s)	225, 745, 769
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	618
XhoI	CTCGAG	1 cut(s)	730
XmaI	CCCGGG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	3 cut(s)	212, 234, 590
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.