Rh1DG236000

NAD(P)H-quinone oxidoreductase subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010702
Physical Location & Seq
Forward (+)
44957908 .. 44958483
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG236000.1

Sequence Viewer

Length: 576 bp
ATGAACCGTATGCTTGCGTATTCGTCCATAGGTCAAATTGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAGGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTCGGAAAACTGAATTTATTCTGGTGTGGATGGCAGGCAGGCCTATATTTCTTGGTTTCAATAGGACTCCTTACAAGCGTTGTTTCTATCTACTATTATCTAAAAATAATCAAGTTATTAATGACTGGACAAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAAGATCCCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGAATGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGAAATTGCTCAGGATACCCTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03010 map00190 map01100 map03010
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

191

Amino Acids

21.03

Weight (kDa)

8.68

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 1 - 123 3.4e-35 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 163
AclWI GGATC 3 cut(s) 209, 222, 450
AcsI RAATTY 1 cut(s) 298
AcvI CACGTG 1 cut(s) 439
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 345, 551
AjnI CCWGG 1 cut(s) 523
Alw26I GTCTC 2 cut(s) 63, 251
AlwI GGATC 3 cut(s) 209, 222, 450
AoxI GGCC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 298
AseI ATTAAT 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 302
AxyI CCTNAGG 1 cut(s) 256
BamHI GGATCC 1 cut(s) 214
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 257
BccI CCATC 2 cut(s) 309, 488
BciT130I CCWGG 1 cut(s) 525
BciVI GTATCC 1 cut(s) 556
BcoDI GTCTC 2 cut(s) 63, 251
BfaI CTAG 2 cut(s) 131, 275
BfuAI ACCTGC 1 cut(s) 269
BfuI GTATCC 1 cut(s) 556
Bme1390I CCNGG 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 558
BsaAI YACGTR 2 cut(s) 167, 439
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 415
Bse21I CCTNAGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 525
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 415
BshFI GGCC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 63, 251
BsnI GGCC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 214, 455, 467
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 3 cut(s) 209, 222, 450
BsrI ACTGG 1 cut(s) 415
BssMI GATC 3 cut(s) 214, 455, 467
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 8
BstBAI YACGTR 2 cut(s) 167, 439
BstC8I GCNNGC 5 cut(s) 15, 91, 145, 321, 325
BstDEI CTNAG 2 cut(s) 256, 558
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 3 cut(s) 217, 458, 470
BstMAI GTCTC 2 cut(s) 63, 251
BstMBI GATC 3 cut(s) 214, 455, 467
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 523
BstSNI TACGTA 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 214, 455
BstYI RGATCY 2 cut(s) 214, 455
Bsu36I CCTNAGG 1 cut(s) 256
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 1 cut(s) 320
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 5 cut(s) 15, 91, 145, 321, 325
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 94, 124
CviJI RGCY 3 cut(s) 227, 239, 327
CviKI_1 RGCY 3 cut(s) 227, 239, 327
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 2 cut(s) 256, 558
DpnI GATC 3 cut(s) 216, 457, 469
DpnII GATC 3 cut(s) 214, 455, 467
Eco105I TACGTA 1 cut(s) 167
Eco147I AGGCCT 1 cut(s) 327
Eco72I CACGTG 1 cut(s) 439
Eco81I CCTNAGG 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 523
FaeI CATG 2 cut(s) 97, 127
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FatI CATG 2 cut(s) 93, 123
FblI GTMKAC 1 cut(s) 163
FokI GGATG 1 cut(s) 327
FspBI CTAG 2 cut(s) 131, 275
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 171
Hin1II CATG 2 cut(s) 97, 127
HinfI GANTC 3 cut(s) 71, 127, 351
HpaII CCGG 1 cut(s) 171
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 2 cut(s) 188, 560
Hpy8I GTNNAC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 2 cut(s) 166, 438
HpyCH4V TGCA 3 cut(s) 89, 147, 197
HpyF3I CTNAG 2 cut(s) 256, 558
HpySE526I ACGT 2 cut(s) 166, 438
Hsp92II CATG 2 cut(s) 97, 127
Kzo9I GATC 3 cut(s) 214, 455, 467
LweI GCATC 1 cut(s) 521
MaeI CTAG 2 cut(s) 131, 275
MaeII ACGT 2 cut(s) 166, 438
MalI GATC 3 cut(s) 216, 457, 469
MboI GATC 3 cut(s) 214, 455, 467
MboII GAAGA 2 cut(s) 257, 465
MflI RGATCY 2 cut(s) 214, 455
MluCI AATT 8 cut(s) 36, 48, 60, 298, 445, 475, 485, 552
MlyI GAGTC 2 cut(s) 65, 345
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 3 cut(s) 254, 279, 444
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 404, 464
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 525
NdeII GATC 3 cut(s) 214, 455, 467
NlaIII CATG 2 cut(s) 97, 127
NlaIV GGNNCC 1 cut(s) 216
PceI AGGCCT 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 127
PleI GAGTC 2 cut(s) 65, 345
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 2 cut(s) 65, 345
Ppu21I YACGTR 2 cut(s) 167, 439
PshBI ATTAAT 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 523
PspCI CACGTG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 2 cut(s) 214, 455
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 404, 464
Sau3AI GATC 3 cut(s) 214, 455, 467
SchI GAGTC 2 cut(s) 65, 345
ScrFI CCNGG 1 cut(s) 525
SetI ASST 5 cut(s) 34, 169, 265, 283, 441
SfaNI GCATC 1 cut(s) 521
SnaBI TACGTA 1 cut(s) 167
Sse9I AATT 8 cut(s) 36, 48, 60, 298, 445, 475, 485, 552
SseBI AGGCCT 1 cut(s) 327
SspMI CTAG 2 cut(s) 131, 275
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 2 cut(s) 169, 441
TaqI TCGA 2 cut(s) 187, 483
TasI AATT 8 cut(s) 36, 48, 60, 298, 445, 475, 485, 552
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 2 cut(s) 404, 464
Tru9I TTAA 2 cut(s) 404, 464
TspDTI ATGAA 4 cut(s) 17, 140, 509, 551
VspI ATTAAT 1 cut(s) 404
XapI RAATTY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 2 cut(s) 131, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.