RchiOBHm_Chr4g0390051

NAD(P)H-quinone oxidoreductase subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010702
Physical Location & Seq
Reverse (-)
5282466 .. 5282807
342 bp
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UTR
Exon/CDS
Intron
PRQ36312

Sequence Viewer

Length: 342 bp
ATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTACGCTTGCGTATTCGTCCATAGGTCAAATTGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAGGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTCGGAATAAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03010 map00190 map01100 map03010
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

113

Amino Acids

12.01

Weight (kDa)

7.74

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 1 - 110 1.2e-35 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 202
AclWI GGATC 2 cut(s) 248, 261
AcsI RAATTY 1 cut(s) 334
AfaI GTAC 2 cut(s) 49, 208
AfiI CCNNNNNNNGG 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 102, 290
AlwI GGATC 2 cut(s) 248, 261
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 1 cut(s) 334
AxyI CCTNAGG 1 cut(s) 295
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 102, 290
BfaI CTAG 2 cut(s) 170, 314
BfuAI ACCTGC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse21I CCTNAGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 210
BsiWI CGTACG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 102, 290
Bsp143I GATC 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 2 cut(s) 248, 261
BsrDI GCAATG 1 cut(s) 18
BssMI GATC 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 54, 130, 184
BstDEI CTNAG 1 cut(s) 295
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 2 cut(s) 102, 290
BstMBI GATC 1 cut(s) 253
BstSNI TACGTA 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 3 cut(s) 54, 130, 184
Csp6I GTAC 2 cut(s) 48, 207
CviAII CATG 3 cut(s) 40, 133, 163
CviJI RGCY 2 cut(s) 266, 278
CviKI_1 RGCY 2 cut(s) 266, 278
CviQI GTAC 2 cut(s) 48, 207
DdeI CTNAG 1 cut(s) 295
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eco105I TACGTA 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 295
FaeI CATG 3 cut(s) 43, 136, 166
FatI CATG 3 cut(s) 39, 132, 162
FblI GTMKAC 1 cut(s) 202
FspBI CTAG 2 cut(s) 170, 314
HapII CCGG 1 cut(s) 210
Hin1II CATG 3 cut(s) 43, 136, 166
HinfI GANTC 3 cut(s) 13, 110, 166
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 203
HpyCH4IV ACGT 2 cut(s) 46, 205
HpyCH4V TGCA 3 cut(s) 128, 186, 236
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 2 cut(s) 46, 205
Hsp92II CATG 3 cut(s) 43, 136, 166
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 3 cut(s) 222, 223, 303
MaeI CTAG 2 cut(s) 170, 314
MaeII ACGT 2 cut(s) 46, 205
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 1 cut(s) 296
MflI RGATCY 1 cut(s) 253
MluCI AATT 4 cut(s) 75, 87, 99, 334
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 2 cut(s) 293, 318
MroXI GAANNNNTTC 1 cut(s) 334
MspI CCGG 1 cut(s) 210
NdeII GATC 1 cut(s) 253
NlaIII CATG 3 cut(s) 43, 136, 166
NlaIV GGNNCC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 13, 166
Pfl23II CGTACG 1 cut(s) 47
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 206
PspLI CGTACG 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 49, 208
RsaNI GTAC 2 cut(s) 48, 207
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 1 cut(s) 104
SetI ASST 5 cut(s) 49, 73, 208, 304, 322
SnaBI TACGTA 1 cut(s) 206
Sse9I AATT 4 cut(s) 75, 87, 99, 334
SspMI CTAG 2 cut(s) 170, 314
TaiI ACGT 2 cut(s) 49, 208
TaqI TCGA 1 cut(s) 226
TasI AATT 4 cut(s) 75, 87, 99, 334
TfiI GAWTC 2 cut(s) 13, 166
TspDTI ATGAA 3 cut(s) 56, 179, 327
XapI RAATTY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 170, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.