AT2G12646

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014522
Physical Location & Seq
Reverse (-)
5166984 .. 5169303
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G12646.3

Sequence Viewer

Length: 771 bp
ATGGGAATTCAGAAACCGGCATGGTTGGATGCGCTATACGCAGAGAAGTTCTTCGTGGGATGTCCATACCATGAGACGGCGAAGAAGAACGAGAGGAACGTGTGTTGTCTTGATTGTTGCACCAGTCTCTGCCCTCACTGTGTACCCTCTCATAGATTCCATAGACTCCTTCAAGTTCGCCGTTATGTGTATCACGACGTTGTTCGGCTTGAAGATCTTCAGAAACTCATCGACTGCTCTAACGTTCAAGCTTATACAATAAATAGTGCAAAAGTGGTGTTCATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTGGCAACTATTGCACTTCTTGTGACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGGGTTGTAAGGTGGACTTTGTGATGAAACGTTACAGGGACATAACCCCATTCCTCAAGCCATGCCACACTCTAACCCTAGGTCCTGACTACATCATCCCACAAGACTTACTGACAGATGATGAAGTGGCGGCCTACGAGACTCCTCGATCAACTGTGGTAGACGGCGATGAGTCCATGAGCTGGTCCTCAGCTTCCTCGGATAACAACAATGCGGGTGCGGCGGCTGCTTATGCCGCAACCACCACCCATGTCGTGAGGAAAAAAAGGACTGGTTTTTGCCTTTGCGCTAAATCGGCTAATAGTTATAAAGAAGTTTCGGAGGATCCTGACGATATTTCTGCTTGCATCAATCGGCGAAAAGGCGTTCCTCAACGATCTCCTCTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

256

Amino Acids

28.85

Weight (kDa)

8.51

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 57 - 128 8.3e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AccB7I CCANNNNNTGG 1 cut(s) 561
AccI GTMKAC 1 cut(s) 540
AciI CCGC 5 cut(s) 509, 593, 599, 602, 615
AclI AACGTT 2 cut(s) 243, 409
AclWI GGATC 2 cut(s) 698, 711
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 76, 561
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 5 cut(s) 173, 212, 248, 313, 356
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 4 cut(s) 251, 320, 561, 572
AluI AGCT 4 cut(s) 251, 320, 561, 572
Alw26I GTCTC 4 cut(s) 68, 131, 286, 512
AlwI GGATC 2 cut(s) 698, 711
AlwNI CAGNNNCTG 1 cut(s) 129
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 2 cut(s) 50, 216
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 2 cut(s) 34, 668
AspS9I GGNCC 2 cut(s) 461, 564
AvaII GGWCC 2 cut(s) 461, 564
AvrII CCTAGG 1 cut(s) 457
BamHI GGATCC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 568
BbvI GCAGC 1 cut(s) 592
BceAI ACGGC 3 cut(s) 93, 165, 559
BcgI CGANNNNNNTGC 2 cut(s) 701, 735
BcoDI GTCTC 4 cut(s) 68, 131, 286, 512
BfaI CTAG 1 cut(s) 458
BglII AGATCT 1 cut(s) 214
BisI GCNGC 5 cut(s) 510, 600, 603, 606, 615
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 5 cut(s) 511, 601, 604, 607, 616
Bme18I GGWCC 2 cut(s) 461, 564
BmgT120I GGNCC 2 cut(s) 461, 564
BmiI GGNNCC 1 cut(s) 705
BmsI GCATC 2 cut(s) 19, 735
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 568
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 3 cut(s) 378, 457, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 561
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 123, 655
Bse3DI GCAATG 1 cut(s) 370
BseDI CCNNGG 3 cut(s) 378, 457, 576
BseGI GGATG 3 cut(s) 34, 65, 474
BseLI CCNNNNNNNGG 2 cut(s) 76, 561
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 2 cut(s) 123, 655
BseRI GAGGAG 2 cut(s) 513, 750
BseXI GCAGC 1 cut(s) 592
BshFI GGCC 1 cut(s) 512
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 76, 561
BsmAI GTCTC 4 cut(s) 68, 131, 286, 512
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 286
Bsp143I GATC 4 cut(s) 214, 527, 703, 755
BspACI CCGC 5 cut(s) 509, 593, 599, 602, 615
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 581
BspLI GGNNCC 1 cut(s) 705
BspPI GGATC 2 cut(s) 698, 711
BspTNI GGTCTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 123, 655
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 378, 457, 576
BssMI GATC 4 cut(s) 214, 527, 703, 755
BssT1I CCWWGG 2 cut(s) 378, 457
Bst4CI ACNGT 2 cut(s) 140, 535
Bst6I CTCTTC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 322, 724
BstDEI CTNAG 1 cut(s) 568
BstF5I GGATG 3 cut(s) 34, 65, 474
BstHHI GCGC 2 cut(s) 34, 668
BstKTI GATC 4 cut(s) 217, 530, 706, 758
BstMAI GTCTC 4 cut(s) 68, 131, 286, 512
BstMBI GATC 4 cut(s) 214, 527, 703, 755
BstMWI GCNNNNNNNGC 7 cut(s) 38, 330, 599, 605, 611, 614, 674
BstPAI GACNNNNGTC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 214, 703
BstYI RGATCY 2 cut(s) 214, 703
BsuRI GGCC 1 cut(s) 512
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 3 cut(s) 34, 65, 474
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 322, 724
CaiI CAGNNNCTG 1 cut(s) 129
CfoI GCGC 2 cut(s) 34, 668
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 461, 564
Csp6I GTAC 1 cut(s) 143
CviAII CATG 5 cut(s) 21, 71, 441, 556, 629
CviJI RGCY 9 cut(s) 208, 251, 320, 439, 512, 561, 572, 605, 677
CviKI_1 RGCY 9 cut(s) 208, 251, 320, 439, 512, 561, 572, 605, 677
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 568
DpnI GATC 4 cut(s) 216, 529, 705, 757
DpnII GATC 4 cut(s) 214, 527, 703, 755
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 378, 457
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 461, 564
Eco57I CTGAAG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 378, 457
ErhI CCWWGG 2 cut(s) 378, 457
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 5 cut(s) 24, 74, 444, 559, 632
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 431
FatI CATG 5 cut(s) 20, 70, 440, 555, 628
FauI CCCGC 1 cut(s) 586
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 510, 600, 603, 606, 615
FokI GGATG 3 cut(s) 41, 72, 461
Fsp4HI GCNGC 5 cut(s) 510, 600, 603, 606, 615
FspBI CTAG 1 cut(s) 458
GlaI GCGC 2 cut(s) 33, 667
GluI GCNGC 5 cut(s) 510, 600, 603, 606, 615
HaeIII GGCC 1 cut(s) 512
HapII CCGG 1 cut(s) 17
HhaI GCGC 2 cut(s) 34, 668
Hin1II CATG 5 cut(s) 24, 74, 444, 559, 632
Hin6I GCGC 2 cut(s) 32, 666
HinP1I GCGC 2 cut(s) 32, 666
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 4 cut(s) 156, 165, 520, 551
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 143, 394, 541
Hpy188I TCNGA 4 cut(s) 12, 222, 580, 700
Hpy188III TCNNGA 7 cut(s) 110, 194, 286, 356, 464, 634, 707
Hpy8I GTNNAC 3 cut(s) 143, 394, 541
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 140, 535
HpyCH4IV ACGT 4 cut(s) 99, 198, 243, 409
HpyCH4V TGCA 4 cut(s) 120, 269, 333, 726
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 330, 599, 605, 611, 614, 674
HpyF3I CTNAG 1 cut(s) 568
HpySE526I ACGT 4 cut(s) 99, 198, 243, 409
Hsp92II CATG 5 cut(s) 24, 74, 444, 559, 632
HspAI GCGC 2 cut(s) 32, 666
Kzo9I GATC 4 cut(s) 214, 527, 703, 755
LmnI GCTCC 2 cut(s) 317, 380
LpnPI CCDG 8 cut(s) 30, 136, 306, 400, 477, 547, 636, 720
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 2 cut(s) 19, 735
MaeI CTAG 1 cut(s) 458
MaeII ACGT 4 cut(s) 99, 198, 243, 409
MaeIII GTNAC 2 cut(s) 341, 410
MalI GATC 4 cut(s) 216, 529, 705, 757
MboI GATC 4 cut(s) 214, 527, 703, 755
MboII GAAGA 7 cut(s) 43, 94, 97, 209, 224, 301, 344
MflI RGATCY 2 cut(s) 214, 703
MluCI AATT 2 cut(s) 6, 308
MlyI GAGTC 3 cut(s) 159, 514, 560
MmeI TCCRAC 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 50, 216
MseI TTAA 1 cut(s) 769
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 7 cut(s) 38, 330, 599, 605, 611, 614, 674
NdeII GATC 4 cut(s) 214, 527, 703, 755
NlaIII CATG 5 cut(s) 24, 74, 444, 559, 632
NlaIV GGNNCC 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 50, 216
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 561
PkrI GCNGC 5 cut(s) 511, 601, 604, 607, 616
PleI GAGTC 3 cut(s) 159, 514, 559
PpsI GAGTC 3 cut(s) 159, 514, 559
PpuMI RGGWCCY 1 cut(s) 461
PshAI GACNNNNGTC 1 cut(s) 348
PsiI TTATAA 1 cut(s) 687
Psp1406I AACGTT 2 cut(s) 243, 409
Psp5II RGGWCCY 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 705
PspPI GGNCC 2 cut(s) 461, 564
PspPPI RGGWCCY 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 2 cut(s) 214, 703
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 769
SatI GCNGC 5 cut(s) 510, 600, 603, 606, 615
Sau3AI GATC 4 cut(s) 214, 527, 703, 755
Sau96I GGNCC 2 cut(s) 461, 564
SchI GAGTC 3 cut(s) 159, 514, 560
SfaNI GCATC 2 cut(s) 19, 735
SinI GGWCC 2 cut(s) 461, 564
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 2 cut(s) 6, 308
SsiI CCGC 5 cut(s) 509, 593, 599, 602, 615
SspMI CTAG 1 cut(s) 458
StyI CCWWGG 2 cut(s) 378, 457
TaaI ACNGT 2 cut(s) 140, 535
TaiI ACGT 4 cut(s) 102, 201, 246, 412
TaqI TCGA 2 cut(s) 231, 526
TaqII GACCGA 1 cut(s) 360
TasI AATT 2 cut(s) 6, 308
TauI GCSGC 4 cut(s) 512, 602, 605, 617
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 769
Tru9I TTAA 1 cut(s) 769
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 271, 419, 516
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 561
VpaK11BI GGWCC 2 cut(s) 461, 564
XapI RAATTY 1 cut(s) 6
XmaJI CCTAGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 2 cut(s) 50, 216
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.