MD02G1017000.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014522
Physical Location & Seq
Forward (+)
1270536 .. 1271983
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1017000.v1.1.491

Sequence Viewer

Length: 774 bp
ATGGGAATTCAGAAGCCTGCATGGTTGGATGCCCTTTACACTGAGAAGTTCTTCGCCGGCTGCTCATTCCACGAAACTGCGAAAAAGAACGAAAAAAACGTCTGCTGTTTGGATTGTTGCATCAGTATATGCCCCCATTGTCTTCCCTCCCATCGATTCCACAGGCTCCTTCAAATTCGCCGTTACGTTTACCATGACGTTGTCCGATTGGAAGATCTTCAGAAGCTCATCGACTGCTCCAACGTTCAGGCATATACCATCAATAGTGCCAAAGTAGTGTTCATCAAGAAAAGACCTCAAAATCGGCAATTCAAGGGTTCTGGAAACTACTGCACATCGTGTGATAGAAGTCTTCAAGAGCCATATATCCATTGCTCTCTCGGTTGCAAGGTGGATTACGTGCTTAAATTCAAGAAAGACCTCTCTCCTTACTTGAAAACATGCAACTCCCTTCAACTGAGTCCTGACTTCTTAGTTCCACTTTCCGATATGGGAGACGAGGAGATGACCAGCGATCAGACCAACCCCAATTCCACAATTCTGGACCTCGATGACCCGATGAGCTCGTCATCATCAGAGTCGTGGGGGTCTGAGACCATGGGCATGAGCTTGCACATGACATACATGCATCATGAGGTCGTCAGAAAGAAGAGAAGCGGGCTTAATTACGCGTCAATATGTGGAAGGTCAACTCATAAAGCTTCCGACGAGGACATGGCCACAAACATGATCAGTAGAAGAAAACGCATTCCTCATAGATCTCCATTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

258

Amino Acids

29.39

Weight (kDa)

8.56

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 131 8.5e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 671
AciI CCGC 1 cut(s) 657
AclI AACGTT 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 3 cut(s) 6, 174, 407
AcuI CTGAAG 1 cut(s) 203
AdeI CACNNNGTG 1 cut(s) 339
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 6 cut(s) 173, 313, 356, 412, 436, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 4 cut(s) 226, 564, 609, 701
AluI AGCT 4 cut(s) 226, 564, 609, 701
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 2 cut(s) 489, 587
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 3 cut(s) 6, 174, 407
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
Asp700I GAANNNNTTC 2 cut(s) 50, 216
AspS9I GGNCC 1 cut(s) 544
AvaII GGWCC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 719
BanII GRGCYC 1 cut(s) 566
BbsI GAAGAC 2 cut(s) 134, 344
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 1 cut(s) 47
BccI CCATC 2 cut(s) 159, 266
BceAI ACGGC 1 cut(s) 165
BclI TGATCA 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 489, 587
BglII AGATCT 2 cut(s) 214, 758
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 3 cut(s) 19, 129, 637
BpiI GAAGAC 2 cut(s) 134, 344
Bsa29I ATCGAT 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 597
Bse118I RCCGGY 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 33, 449, 582
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 671
BshFI GGCC 1 cut(s) 719
BshVI ATCGAT 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 566
BsiSI CCGG 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 489, 587
BsmBI CGTCTC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 1 cut(s) 719
Bso31I GGTCTC 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 4 cut(s) 214, 514, 729, 758
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 1 cut(s) 657
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 3 cut(s) 34, 450, 583
BspDI ATCGAT 1 cut(s) 154
BspFNI CGCG 1 cut(s) 671
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 4 cut(s) 214, 514, 729, 758
BssT1I CCWWGG 1 cut(s) 597
Bst6I CTCTTC 1 cut(s) 644
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 4 cut(s) 18, 58, 611, 659
BstDEI CTNAG 4 cut(s) 42, 458, 472, 591
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 671
BstKTI GATC 4 cut(s) 217, 517, 732, 761
BstMAI GTCTC 2 cut(s) 489, 587
BstMBI GATC 4 cut(s) 214, 514, 729, 758
BstNSI RCATGY 2 cut(s) 444, 628
BstUI CGCG 1 cut(s) 671
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 2 cut(s) 134, 344
BstX2I RGATCY 2 cut(s) 214, 758
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 214, 758
Bsu15I ATCGAT 1 cut(s) 154
BsuRI GGCC 1 cut(s) 719
BsuTUI ATCGAT 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 4 cut(s) 18, 58, 611, 659
CciI TCATGA 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 154
CseI GACGC 1 cut(s) 660
DdeI CTNAG 4 cut(s) 42, 458, 472, 591
DpnI GATC 4 cut(s) 216, 516, 731, 760
DpnII GATC 4 cut(s) 214, 514, 729, 758
DraIII CACNNNGTG 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 564
EcoRI GAATTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 597
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 489
FauI CCCGC 1 cut(s) 650
FbaI TGATCA 1 cut(s) 729
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 719
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 660
HincII GTYRAC 1 cut(s) 690
HindII GTYRAC 1 cut(s) 690
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 3 cut(s) 156, 460, 578
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 2 cut(s) 190, 690
Hpy188I TCNGA 9 cut(s) 12, 206, 222, 487, 519, 577, 592, 644, 706
Hpy188III TCNNGA 7 cut(s) 286, 321, 356, 412, 464, 542, 632
Hpy8I GTNNAC 2 cut(s) 190, 690
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 3 cut(s) 179, 461, 678
HpyCH4IV ACGT 5 cut(s) 99, 186, 198, 243, 399
HpyCH4V TGCA 7 cut(s) 20, 120, 333, 387, 444, 613, 628
HpyF3I CTNAG 4 cut(s) 42, 458, 472, 591
HpySE526I ACGT 5 cut(s) 99, 186, 198, 243, 399
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 4 cut(s) 214, 514, 729, 758
LmnI GCTCC 2 cut(s) 171, 242
LpnPI CCDG 8 cut(s) 30, 70, 148, 233, 306, 477, 523, 527
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 3 cut(s) 19, 129, 637
MaeII ACGT 5 cut(s) 99, 186, 198, 243, 399
MaeIII GTNAC 1 cut(s) 182
MalI GATC 4 cut(s) 216, 516, 731, 760
MboI GATC 4 cut(s) 214, 514, 729, 758
MboII GAAGA 7 cut(s) 43, 134, 209, 224, 344, 661, 750
MflI RGATCY 2 cut(s) 214, 758
MhlI GDGCHC 1 cut(s) 566
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 7 cut(s) 6, 174, 308, 407, 529, 537, 664
MluI ACGCGT 1 cut(s) 669
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 2 cut(s) 469, 587
MmeI TCCRAC 3 cut(s) 6, 264, 729
MnlI CCTC 8 cut(s) 157, 306, 431, 493, 557, 628, 703, 762
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 630
MroNI GCCGGC 1 cut(s) 56
MroXI GAANNNNTTC 2 cut(s) 50, 216
MscI TGGCCA 1 cut(s) 719
MseI TTAA 2 cut(s) 405, 663
MslI CAYNNNNRTG 2 cut(s) 602, 725
Msp20I TGGCCA 1 cut(s) 719
MspI CCGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 747
MvnI CGCG 1 cut(s) 671
NaeI GCCGGC 1 cut(s) 58
NcoI CCATGG 1 cut(s) 597
NdeII GATC 4 cut(s) 214, 514, 729, 758
NgoMIV GCCGGC 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 630
NspI RCATGY 2 cut(s) 444, 628
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 747
PdiI GCCGGC 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 50, 216
PfeI GAWTC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 468, 586
PpsI GAGTC 2 cut(s) 468, 586
Ppu21I YACGTR 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 566
Psp1406I AACGTT 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 544
PsuI RGATCY 2 cut(s) 214, 758
PsyI GACNNNGTC 1 cut(s) 200
RseI CAYNNNNRTG 2 cut(s) 602, 725
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 2 cut(s) 405, 663
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 4 cut(s) 214, 514, 729, 758
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 2 cut(s) 469, 587
SduI GDGCHC 1 cut(s) 566
SfaNI GCATC 3 cut(s) 19, 129, 637
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 2 cut(s) 602, 725
Sse9I AATT 7 cut(s) 6, 174, 308, 407, 529, 537, 664
SsiI CCGC 1 cut(s) 657
SstI GAGCTC 1 cut(s) 566
StyI CCWWGG 1 cut(s) 597
TaiI ACGT 5 cut(s) 102, 189, 201, 246, 402
TaqI TCGA 3 cut(s) 154, 231, 549
TasI AATT 7 cut(s) 6, 174, 308, 407, 529, 537, 664
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 405, 663
Tru9I TTAA 2 cut(s) 405, 663
TscAI CASTG 1 cut(s) 46
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 271
TspRI CASTG 1 cut(s) 46
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 3 cut(s) 6, 174, 407
XceI RCATGY 2 cut(s) 444, 628
XmnI GAANNNNTTC 2 cut(s) 50, 216
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.