FvH4_1g01900

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014522
Physical Location & Seq
Forward (+)
993394 .. 994924
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01900.t1

Sequence Viewer

Length: 780 bp
ATGGGAATTCAGAAGCCTGCATGGTTGGAAGCCCTCTACACTCAGAAGTTCTTTGCAGCTTGCTCCTTTCATGAAACTGCAAAGAAGAACGAAAAGAACGTTTACTGTTTGGATTGCTGCACCAGTATATGCCCCCATTGTCTACCTTCACACCGTTGCCATAGGCTTCTTCAAATTCGTCGCTATGTTTACCACGATGTTGTAAGATTGGAAGACCTTCAAAAGCTCGTCGACTGCAATAATGTTCAGTCATATACCATAAATAATGCCAAAGTTGTGTTCATCAAGAAGAGACCTCAGAATAGGCAATTCAAGGGTTCCGGAAACTATTGTACTTCTTGTGACAGAAGTCTTCAAGAACCTTATATCCATTGCTCACTTGGGTGCAAGGTGGATTATGTGGTTACACTGAAGAGGGGGCTCTCTCCGTACCTGAAGAAATGTGAAACACTCCAACTGAGTCCAGACTTCTTAGTTCCACTCCAGTCCGAGTCTGATGATCAGGACATGACCAGTGATCAAACTCTCCATTCGACAATTGTGGACTGCGACGATCCAATGAGCTATTCGTCATCATCAGGCTCCGAAAACATGAGCATGAGCATGAGCATGGCATACACAAATCGTGATCAGATTGTCCGAAAGAAGAGAAGCGGGCTCAATTACAGTTACGTGTACTGCTCAAGATCAGCTCACAAAGTTTCAGATGATGATCAAGACATGTCCTCTAACATGATCAGTAGAAGAAAAAGCATTCCTCATAGATCTCCTCTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

260

Amino Acids

29.74

Weight (kDa)

8.62

Isoelectric Point (pI)

64.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 131 7.2e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 142, 231
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 1 cut(s) 654
AclI AACGTT 1 cut(s) 99
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 2 cut(s) 6, 174
AcuI CTGAAG 2 cut(s) 431, 455
AfaI GTAC 3 cut(s) 334, 431, 677
AflIII ACRYGT 2 cut(s) 672, 720
AgsI TTSAA 4 cut(s) 173, 221, 313, 356
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 295, 550, 582
AleI CACNNNNGTG 1 cut(s) 382
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 4 cut(s) 59, 226, 564, 692
AluI AGCT 4 cut(s) 59, 226, 564, 692
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 548
Aor13HI TCCGGA 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 56, 117
ApoI RAATTY 2 cut(s) 6, 174
Asp700I GAANNNNTTC 1 cut(s) 216
BanII GRGCYC 2 cut(s) 423, 660
BbsI GAAGAC 2 cut(s) 219, 344
BbvI GCAGC 2 cut(s) 68, 104
BclI TGATCA 5 cut(s) 499, 517, 628, 712, 735
BcoDI GTCTC 1 cut(s) 286
BglII AGATCT 1 cut(s) 764
BisI GCNGC 2 cut(s) 57, 118
BlsI GCNGC 2 cut(s) 58, 119
BmiI GGNNCC 2 cut(s) 319, 583
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 219, 344
BpmI CTGGAG 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 667
BsaAI YACGTR 1 cut(s) 673
BsaBI GATNNNNATC 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 320
Bse1I ACTGG 3 cut(s) 123, 484, 513
Bse3DI GCAATG 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 320
BseJI GATNNNNATC 1 cut(s) 711
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 56, 311, 449
BseNI ACTGG 3 cut(s) 123, 484, 513
BseRI GAGGAG 1 cut(s) 759
BseXI GCAGC 2 cut(s) 68, 104
BsgI GTGCAG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 753
Bso31I GGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 423, 660
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
BspACI CCGC 1 cut(s) 654
BspCNI CTCAG 3 cut(s) 55, 310, 450
BspEI TCCGGA 1 cut(s) 320
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 319, 583
BspPI GGATC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 3 cut(s) 123, 484, 513
BssMI GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
Bst4CI ACNGT 3 cut(s) 107, 155, 668
Bst6I CTCTTC 3 cut(s) 284, 407, 641
BstBAI YACGTR 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 18, 61, 656
BstDEI CTNAG 4 cut(s) 42, 297, 458, 472
BstKTI GATC 8 cut(s) 502, 520, 556, 631, 689, 715, 738, 767
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
BstNSI RCATGY 1 cut(s) 724
BstPAI GACNNNNGTC 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 68, 104
BstV2I GAAGAC 2 cut(s) 219, 344
BstX2I RGATCY 1 cut(s) 764
BstYI RGATCY 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 407, 520
Cac8I GCNNGC 3 cut(s) 18, 61, 656
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 3 cut(s) 333, 430, 676
CviAII CATG 9 cut(s) 21, 71, 508, 592, 598, 604, 610, 721, 733
CviQI GTAC 3 cut(s) 333, 430, 676
DdeI CTNAG 4 cut(s) 42, 297, 458, 472
DpnI GATC 8 cut(s) 501, 519, 555, 630, 688, 714, 737, 766
DpnII GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
Eam1104I CTCTTC 3 cut(s) 284, 407, 641
EarI CTCTTC 3 cut(s) 284, 407, 641
Eco24I GRGCYC 2 cut(s) 423, 660
Eco31I GGTCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 431, 455
EcoRI GAATTC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 423, 660
FaeI CATG 9 cut(s) 24, 74, 511, 595, 601, 607, 613, 724, 736
FatI CATG 9 cut(s) 20, 70, 507, 591, 597, 603, 609, 720, 732
FauI CCCGC 1 cut(s) 647
FbaI TGATCA 5 cut(s) 499, 517, 628, 712, 735
FblI GTMKAC 2 cut(s) 142, 231
Fnu4HI GCNGC 2 cut(s) 57, 118
FriOI GRGCYC 2 cut(s) 423, 660
Fsp4HI GCNGC 2 cut(s) 57, 118
GluI GCNGC 2 cut(s) 57, 118
GsuI CTGGAG 1 cut(s) 467
HapII CCGG 1 cut(s) 321
Hin1II CATG 9 cut(s) 24, 74, 511, 595, 601, 607, 613, 724, 736
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 460, 491
HpaII CCGG 1 cut(s) 321
Hpy166II GTNNAC 6 cut(s) 103, 143, 190, 232, 544, 676
Hpy188I TCNGA 9 cut(s) 12, 45, 300, 490, 496, 586, 633, 641, 706
Hpy188III TCNNGA 9 cut(s) 71, 286, 321, 356, 464, 503, 626, 684, 716
Hpy8I GTNNAC 6 cut(s) 103, 143, 190, 232, 544, 676
Hpy99I CGWCG 3 cut(s) 183, 233, 554
HpyAV CCTTC 2 cut(s) 156, 227
HpyCH4III ACNGT 3 cut(s) 107, 155, 668
HpyCH4IV ACGT 2 cut(s) 99, 672
HpyCH4V TGCA 6 cut(s) 20, 56, 80, 120, 237, 387
HpyF3I CTNAG 4 cut(s) 42, 297, 458, 472
HpySE526I ACGT 2 cut(s) 99, 672
Hsp92II CATG 9 cut(s) 24, 74, 511, 595, 601, 607, 613, 724, 736
Kpn2I TCCGGA 1 cut(s) 320
Ksp22I TGATCA 5 cut(s) 499, 517, 628, 712, 735
Kzo9I GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
LmnI GCTCC 2 cut(s) 68, 587
LpnPI CCDG 9 cut(s) 30, 136, 334, 446, 477, 488, 497, 526, 564
Lsp1109I GCAGC 2 cut(s) 68, 104
MaeII ACGT 2 cut(s) 99, 672
MaeIII GTNAC 3 cut(s) 341, 403, 668
MalI GATC 8 cut(s) 501, 519, 555, 630, 688, 714, 737, 766
MboI GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
MboII GAAGA 9 cut(s) 97, 161, 224, 301, 344, 424, 448, 658, 756
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 764
MhlI GDGCHC 2 cut(s) 423, 660
MluCI AATT 5 cut(s) 6, 174, 308, 537, 661
MlyI GAGTC 2 cut(s) 469, 500
MmeI TCCRAC 2 cut(s) 6, 478
MnlI CCTC 6 cut(s) 44, 306, 408, 736, 768, 780
MroI TCCGGA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 216
MslI CAYNNNNRTG 4 cut(s) 382, 596, 602, 608
MspI CCGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 753
NdeII GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
NlaIII CATG 9 cut(s) 24, 74, 511, 595, 601, 607, 613, 724, 736
NlaIV GGNNCC 2 cut(s) 319, 583
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 724
OliI CACNNNNGTG 1 cut(s) 382
PagI TCATGA 1 cut(s) 70
PciI ACATGT 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 216
PkrI GCNGC 2 cut(s) 58, 119
PleI GAGTC 2 cut(s) 468, 499
PpsI GAGTC 2 cut(s) 468, 499
Ppu21I YACGTR 1 cut(s) 673
PscI ACATGT 1 cut(s) 720
PshAI GACNNNNGTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 319, 583
PsuI RGATCY 1 cut(s) 764
RsaI GTAC 3 cut(s) 334, 431, 677
RsaNI GTAC 3 cut(s) 333, 430, 676
RseI CAYNNNNRTG 4 cut(s) 382, 596, 602, 608
SalI GTCGAC 1 cut(s) 230
SatI GCNGC 2 cut(s) 57, 118
Sau3AI GATC 8 cut(s) 499, 517, 553, 628, 686, 712, 735, 764
SchI GAGTC 2 cut(s) 469, 500
SduI GDGCHC 2 cut(s) 423, 660
SmiMI CAYNNNNRTG 4 cut(s) 382, 596, 602, 608
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 5 cut(s) 6, 174, 308, 537, 661
SsiI CCGC 1 cut(s) 654
TaaI ACNGT 3 cut(s) 107, 155, 668
TaiI ACGT 2 cut(s) 102, 675
TaqI TCGA 2 cut(s) 231, 533
TasI AATT 5 cut(s) 6, 174, 308, 537, 661
TatI WGTACW 2 cut(s) 332, 675
TscAI CASTG 2 cut(s) 414, 520
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 56, 117
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 59, 87, 271
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 414, 520
XapI RAATTY 2 cut(s) 6, 174
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 142, 231
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.