Rh2AG023400

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014522
Physical Location & Seq
Forward (+)
1662099 .. 1663701
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG023400.1

Sequence Viewer

Length: 768 bp
ATGGGAATACAGAAGCCTGCATGGTTGGAAGCCCTCTATACTCAGAAGTTCTTTGCAGCTTGCTCCTTTCATGAAACTGCAAAGAAGAACGAAAAGAACGTTTACTGTTTGGATTGTTGCACCAGTATATGCCCCCATTGTCTACCTTCCCACCGTTTCCATAGGCTCCTTCAAATTCGTCGCTATGTTTACCATGATGTTGTAAGACTGGAAGATCTTCAAAAGCTCGTCGACTGCAATAATGTTCAGTCATATACCATAAATAATGCCAAAGTGGTGTTCATCAAGAAGAGACCTCAGAATAGGCAATTCAAGGGTTCAGGAAACTATTGCACTTCTTGTGACAGAAGTCTTCAAGAACCTTATATCCATTGCTCTCTTGGGTGCAAGGTGGATTATGTGGTTACATTGAAGAGGGGGCTCTCTCCTTACCTGAGGAAATGTGAATCACTCCAACTGAGTCCAGACTTCTTAGTTCCTCTCCAGTCTGAGTCTGATGATCAGGACATGACCAGTGATCAGACTCTCCATTCCACAATTGTGGACTGCGATGATCCAATGAGCTATTCGTCATCATCAGGCTCCGAAAACATGAGCATGGCATACACAAATCGTGATCAGATTGTCCGAAAGAAGAGAAGCGGACTCAATTACAGTTACGTGTACTGCTCAAGATCAGCTCATAAAGTTTCCAACGATGATCAAGACATGTCCTCAAACATGATCAGTAGAAGAAAAAGCATTCCTCATAGATCTCCTCTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

255

Amino Acids

29.36

Weight (kDa)

8.75

Isoelectric Point (pI)

62.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 131 7e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 142, 231
AciI CCGC 1 cut(s) 642
AclI AACGTT 1 cut(s) 99
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 1 cut(s) 665
AflIII ACRYGT 2 cut(s) 660, 708
AgsI TTSAA 5 cut(s) 173, 221, 313, 356, 412
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 295, 550, 582
AleI CACNNNNGTG 1 cut(s) 539
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 4 cut(s) 59, 226, 564, 680
AluI AGCT 4 cut(s) 59, 226, 564, 680
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 1 cut(s) 548
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 216
AxyI CCTNAGG 1 cut(s) 434
BanII GRGCYC 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 68
BclI TGATCA 5 cut(s) 499, 517, 616, 700, 723
BcoDI GTCTC 1 cut(s) 286
BglII AGATCT 2 cut(s) 214, 752
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 167, 583
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 661
BsaI GGTCTC 1 cut(s) 286
Bse1I ACTGG 4 cut(s) 123, 213, 484, 513
Bse21I CCTNAGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 5 cut(s) 56, 311, 425, 449, 480
BseNI ACTGG 4 cut(s) 123, 213, 484, 513
BseRI GAGGAG 1 cut(s) 747
BseXI GCAGC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 741
Bso31I GGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
BspACI CCGC 1 cut(s) 642
BspCNI CTCAG 5 cut(s) 55, 310, 426, 450, 481
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 167, 583
BspPI GGATC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 4 cut(s) 123, 213, 484, 513
BssMI GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
Bst4CI ACNGT 3 cut(s) 107, 155, 656
Bst6I CTCTTC 3 cut(s) 284, 407, 629
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 18, 61
BstDEI CTNAG 6 cut(s) 42, 297, 434, 458, 472, 489
BstKTI GATC 9 cut(s) 217, 502, 520, 556, 619, 677, 703, 726, 755
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
BstNSI RCATGY 1 cut(s) 712
BstPAI GACNNNNGTC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 214, 752
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 214, 752
Bsu36I CCTNAGG 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 18, 61
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 1 cut(s) 664
CviAII CATG 8 cut(s) 21, 71, 194, 508, 592, 598, 709, 721
CviJI RGCY 9 cut(s) 16, 32, 59, 166, 226, 421, 564, 582, 680
CviKI_1 RGCY 9 cut(s) 16, 32, 59, 166, 226, 421, 564, 582, 680
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 6 cut(s) 42, 297, 434, 458, 472, 489
DpnI GATC 9 cut(s) 216, 501, 519, 555, 618, 676, 702, 725, 754
DpnII GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
Eam1104I CTCTTC 3 cut(s) 284, 407, 629
EarI CTCTTC 3 cut(s) 284, 407, 629
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 8 cut(s) 24, 74, 197, 511, 595, 601, 712, 724
FatI CATG 8 cut(s) 20, 70, 193, 507, 591, 597, 708, 720
FbaI TGATCA 5 cut(s) 499, 517, 616, 700, 723
FblI GTMKAC 2 cut(s) 142, 231
Fnu4HI GCNGC 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 467
Hin1II CATG 8 cut(s) 24, 74, 197, 511, 595, 601, 712, 724
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 446, 460, 491, 523, 645
Hpy166II GTNNAC 6 cut(s) 103, 143, 190, 232, 544, 664
Hpy188I TCNGA 8 cut(s) 45, 300, 490, 496, 522, 586, 621, 629
Hpy188III TCNNGA 9 cut(s) 71, 286, 321, 356, 464, 503, 614, 672, 704
Hpy8I GTNNAC 6 cut(s) 103, 143, 190, 232, 544, 664
Hpy99I CGWCG 2 cut(s) 183, 233
HpyAV CCTTC 2 cut(s) 156, 179
HpyCH4III ACNGT 3 cut(s) 107, 155, 656
HpyCH4IV ACGT 2 cut(s) 99, 660
HpyCH4V TGCA 7 cut(s) 20, 56, 80, 120, 237, 333, 387
HpyF3I CTNAG 6 cut(s) 42, 297, 434, 458, 472, 489
HpySE526I ACGT 2 cut(s) 99, 660
Hsp92II CATG 8 cut(s) 24, 74, 197, 511, 595, 601, 712, 724
Ksp22I TGATCA 5 cut(s) 499, 517, 616, 700, 723
Kzo9I GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
LmnI GCTCC 3 cut(s) 68, 171, 587
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 2 cut(s) 99, 660
MaeIII GTNAC 3 cut(s) 341, 403, 656
MalI GATC 9 cut(s) 216, 501, 519, 555, 618, 676, 702, 725, 754
MboI GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
MboII GAAGA 8 cut(s) 97, 209, 224, 301, 344, 424, 646, 744
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 214, 752
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 4 cut(s) 174, 308, 537, 649
MlyI GAGTC 4 cut(s) 469, 500, 517, 639
MmeI TCCRAC 3 cut(s) 6, 478, 717
MnlI CCTC 8 cut(s) 44, 306, 408, 429, 489, 724, 756, 768
MroXI GAANNNNTTC 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 539, 596
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 741
NdeII GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
NlaIII CATG 8 cut(s) 24, 74, 197, 511, 595, 601, 712, 724
NlaIV GGNNCC 2 cut(s) 167, 583
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 712
OliI CACNNNNGTG 1 cut(s) 539
PagI TCATGA 1 cut(s) 70
PciI ACATGT 1 cut(s) 708
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 741
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 4 cut(s) 468, 499, 517, 639
PpsI GAGTC 4 cut(s) 468, 499, 517, 639
Ppu21I YACGTR 1 cut(s) 661
PscI ACATGT 1 cut(s) 708
PshAI GACNNNNGTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 167, 583
PsuI RGATCY 2 cut(s) 214, 752
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
RseI CAYNNNNRTG 2 cut(s) 539, 596
SalI GTCGAC 1 cut(s) 230
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 9 cut(s) 214, 499, 517, 553, 616, 674, 700, 723, 752
SchI GAGTC 4 cut(s) 469, 500, 517, 639
SduI GDGCHC 1 cut(s) 423
SmiMI CAYNNNNRTG 2 cut(s) 539, 596
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 4 cut(s) 174, 308, 537, 649
SsiI CCGC 1 cut(s) 642
TaaI ACNGT 3 cut(s) 107, 155, 656
TaiI ACGT 2 cut(s) 102, 663
TaqI TCGA 1 cut(s) 231
TasI AATT 4 cut(s) 174, 308, 537, 649
TatI WGTACW 1 cut(s) 663
TfiI GAWTC 1 cut(s) 446
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 59, 87, 271
TspRI CASTG 1 cut(s) 520
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 142, 231
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.