Rroxscaffold_2G00154030

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014522
Physical Location & Seq
Reverse (-)
90729407 .. 90730990
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154030.1

Sequence Viewer

Length: 810 bp
ATGGTGAGTCACAGAGGCAGCTCCTTCAAGAAGAACTTGGGAATTCAGAAGCCTGCATGGTTGGAAGCCCTCTATACCCAGACGTTCTTTGCAGCTTGCTCCTTTCATGAAACTGCAAAGAAGAACGAAAAGAACGTTTACTGTTTGGATTGTTGCACCAGTATATGCCCCCATTGTCTACCTTCCCACCGTTTCCATAGGCTCCTTCAAATTCGTCGCTATGTTTACCATGATGTTGTAAGATTGGAAGATCTTCAAAAGCTCGTCGACTGCAATAATGTTCAGTCATATACCATAAATAATGCCAAAGTGGTGTTCATCAAGAAGAGACCCCAGAATAGGCAATTCAAGGGTTCAGGAAACTATTGCACTTCTTGTGACAGAAGTCTTCAAGAACCTTATATCCATTGCTCTCTTGGGTGCAAGGTGGATTATGTGGTTACATTGAAGCGGGGGCTCTCTCCTTACCTGAGGAAATGTGAATCACTCCAACTGAGTCCAGACTTCTTAGTTCCTCTCCAGTCCGAGTCTGATGATCAGGACATGACCAGTGATCAGACTCTCCATTCCACAATTGTGGACTGCGACGATCCAATGAGCTATTCGTCATCATCAGGCTCCGAAAACATGAGCATGAGCATGGCATACACAAATCGTGATCAGATTGTCCGAAAGAAGAGAAGCGGACTCAATTACAGTTACGTGTACTGCTCAAGATCAGCTCATAAAGTTTCCCACAATGATCAAGACATGTCCTCAAACATGATCAGTAGAAGAAAAAGCATTCCTCATAGATCTCCTCTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

269

Amino Acids

30.92

Weight (kDa)

8.97

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 72 - 143 7.7e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 178, 267
AciI CCGC 2 cut(s) 451, 684
AclI AACGTT 1 cut(s) 135
AclWI GGATC 1 cut(s) 584
AcsI RAATTY 2 cut(s) 42, 210
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 1 cut(s) 339
AflIII ACRYGT 2 cut(s) 702, 750
AgsI TTSAA 6 cut(s) 28, 209, 257, 349, 392, 448
AjuI GAANNNNNNNTTGG 4 cut(s) 299, 331, 586, 618
AleI CACNNNNGTG 1 cut(s) 575
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 5 cut(s) 21, 95, 262, 600, 722
AluI AGCT 5 cut(s) 21, 95, 262, 600, 722
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 18, 92
ApoI RAATTY 2 cut(s) 42, 210
Asp700I GAANNNNTTC 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 470
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 30, 104
BclI TGATCA 5 cut(s) 535, 553, 658, 742, 765
BcoDI GTCTC 1 cut(s) 322
BglII AGATCT 2 cut(s) 250, 794
BisI GCNGC 2 cut(s) 19, 93
BlsI GCNGC 2 cut(s) 20, 94
BmiI GGNNCC 2 cut(s) 203, 619
BoxI GACNNNNGTC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 697
BsaAI YACGTR 1 cut(s) 703
BsaI GGTCTC 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 3 cut(s) 159, 520, 549
Bse21I CCTNAGG 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 461, 485
BseNI ACTGG 3 cut(s) 159, 520, 549
BseRI GAGGAG 1 cut(s) 789
BseXI GCAGC 2 cut(s) 30, 104
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 783
Bso31I GGTCTC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
BspACI CCGC 2 cut(s) 451, 684
BspCNI CTCAG 2 cut(s) 462, 486
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 203, 619
BspPI GGATC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 406
BsrI ACTGG 3 cut(s) 159, 520, 549
BssMI GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
Bst4CI ACNGT 3 cut(s) 143, 191, 698
Bst6I CTCTTC 2 cut(s) 320, 671
BstBAI YACGTR 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 54, 97
BstDEI CTNAG 3 cut(s) 470, 494, 508
BstKTI GATC 9 cut(s) 253, 538, 556, 592, 661, 719, 745, 768, 797
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
BstNSI RCATGY 1 cut(s) 754
BstPAI GACNNNNGTC 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 30, 104
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 250, 794
BstXI CCANNNNNNTGG 1 cut(s) 577
BstYI RGATCY 2 cut(s) 250, 794
Bsu36I CCTNAGG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 54, 97
CciI TCATGA 1 cut(s) 106
Csp6I GTAC 1 cut(s) 706
CviAII CATG 9 cut(s) 57, 107, 230, 544, 628, 634, 640, 751, 763
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 3 cut(s) 470, 494, 508
DpnI GATC 9 cut(s) 252, 537, 555, 591, 660, 718, 744, 767, 796
DpnII GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
Eam1104I CTCTTC 2 cut(s) 320, 671
EarI CTCTTC 2 cut(s) 320, 671
Eco24I GRGCYC 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 459
FaeI CATG 9 cut(s) 60, 110, 233, 547, 631, 637, 643, 754, 766
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 9 cut(s) 56, 106, 229, 543, 627, 633, 639, 750, 762
FauI CCCGC 1 cut(s) 444
FbaI TGATCA 5 cut(s) 535, 553, 658, 742, 765
FblI GTMKAC 2 cut(s) 178, 267
Fnu4HI GCNGC 2 cut(s) 19, 93
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 2 cut(s) 19, 93
GluI GCNGC 2 cut(s) 19, 93
GsuI CTGGAG 1 cut(s) 503
Hin1II CATG 9 cut(s) 60, 110, 233, 547, 631, 637, 643, 754, 766
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 6 cut(s) 7, 482, 496, 527, 559, 687
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 6 cut(s) 139, 179, 226, 268, 580, 706
Hpy188I TCNGA 7 cut(s) 48, 526, 532, 558, 622, 663, 671
Hpy8I GTNNAC 6 cut(s) 139, 179, 226, 268, 580, 706
Hpy99I CGWCG 3 cut(s) 219, 269, 590
HpyAV CCTTC 3 cut(s) 34, 192, 215
HpyCH4III ACNGT 3 cut(s) 143, 191, 698
HpyCH4IV ACGT 3 cut(s) 83, 135, 702
HpyCH4V TGCA 7 cut(s) 56, 92, 116, 156, 273, 369, 423
HpyF3I CTNAG 3 cut(s) 470, 494, 508
HpySE526I ACGT 3 cut(s) 83, 135, 702
Hsp92II CATG 9 cut(s) 60, 110, 233, 547, 631, 637, 643, 754, 766
Ksp22I TGATCA 5 cut(s) 535, 553, 658, 742, 765
Kzo9I GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
LmnI GCTCC 4 cut(s) 26, 104, 207, 623
Lsp1109I GCAGC 2 cut(s) 30, 104
MaeII ACGT 3 cut(s) 83, 135, 702
MaeIII GTNAC 4 cut(s) 8, 377, 439, 698
MalI GATC 9 cut(s) 252, 537, 555, 591, 660, 718, 744, 767, 796
MboI GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
MboII GAAGA 8 cut(s) 43, 133, 245, 260, 337, 380, 688, 786
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 2 cut(s) 250, 794
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 5 cut(s) 42, 210, 344, 573, 691
MlyI GAGTC 5 cut(s) 16, 505, 536, 553, 681
MmeI TCCRAC 2 cut(s) 42, 514
MnlI CCTC 7 cut(s) 8, 80, 465, 525, 766, 798, 810
MroXI GAANNNNTTC 1 cut(s) 252
MslI CAYNNNNRTG 3 cut(s) 575, 632, 638
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 783
NdeII GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
NlaIII CATG 9 cut(s) 60, 110, 233, 547, 631, 637, 643, 754, 766
NlaIV GGNNCC 2 cut(s) 203, 619
NmuCI GTSAC 2 cut(s) 8, 377
NspI RCATGY 1 cut(s) 754
OliI CACNNNNGTG 1 cut(s) 575
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 482
PkrI GCNGC 2 cut(s) 20, 94
PleI GAGTC 5 cut(s) 15, 504, 535, 553, 681
PpsI GAGTC 5 cut(s) 15, 504, 535, 553, 681
Ppu21I YACGTR 1 cut(s) 703
PscI ACATGT 1 cut(s) 750
PshAI GACNNNNGTC 1 cut(s) 384
Psp1406I AACGTT 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 203, 619
PsuI RGATCY 2 cut(s) 250, 794
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
RseI CAYNNNNRTG 3 cut(s) 575, 632, 638
SalI GTCGAC 1 cut(s) 266
SatI GCNGC 2 cut(s) 19, 93
Sau3AI GATC 9 cut(s) 250, 535, 553, 589, 658, 716, 742, 765, 794
SchI GAGTC 5 cut(s) 16, 505, 536, 553, 681
SduI GDGCHC 1 cut(s) 459
SmiMI CAYNNNNRTG 3 cut(s) 575, 632, 638
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
Sse9I AATT 5 cut(s) 42, 210, 344, 573, 691
SsiI CCGC 2 cut(s) 451, 684
TaaI ACNGT 3 cut(s) 143, 191, 698
TaiI ACGT 3 cut(s) 86, 138, 705
TaqI TCGA 1 cut(s) 267
TasI AATT 5 cut(s) 42, 210, 344, 573, 691
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 1 cut(s) 482
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 2 cut(s) 8, 377
TseI GCWGC 2 cut(s) 18, 92
Tsp45I GTSAC 2 cut(s) 8, 377
TspDTI ATGAA 3 cut(s) 95, 123, 307
TspRI CASTG 1 cut(s) 556
XapI RAATTY 2 cut(s) 42, 210
XceI RCATGY 1 cut(s) 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XmiI GTMKAC 2 cut(s) 178, 267
XmnI GAANNNNTTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.