pycom02g01530

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014522
Physical Location & Seq
Forward (+)
916856 .. 919297
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01530.1

Sequence Viewer

Length: 879 bp
ATGGCTGGTAAGAAAATGGCGGAGCAGCTCCTTCAAGAAGGTGCCTTGGTTAGTTTAGAATTAGAGCTCTTCAGCCAAGGAGATGAGCAGCATTTGTTTATAGGCATGGGAATTCAGAAGCCTGCATGGTTGGATGCCCTTTACACCGAGAAGTTCTTCGCCGGCTGTTCATTCCACGAAACTGCGAAAAAGAACGAAAAAAACGTCTGCTGCTTGGATTGTTGCATCAGTATATGCCCCCATTGTCTTCCCTCCCATCGATTCCACAGGCTCCTTCAAATTCGCCGTTACGTTTACCATGACGTTGTCCGATTGGAAGATCTTCAGAAGCTCATCGACTGCTCCAACGTTCAGGCATATACCATCAATAGTGCCAAAGTAGTGTTCATCCAGAAAAGACCTCAAAATCGGCAATTCAAGGGTTCCGGAAACTACTGCACATCGTGTGATAGAAGTCTTCAAGAGCCATATATCCATTGCTCTCTCGGTTGCAAGGTGGATTACTTGCTTAAATTCAAGAAAGACCTCTCTCCTTACTTGAAAACATGCAACTCCCTTCAACTGAGTCCTGACTTCTTAGTTCCACTTTCCGACATGGGAGACGAGGAGATGACCAGCGATCAGACCAACCCTAATTCCACAATTGTGGACCTCGATGACCCGATGAGCTCATCATCATCAGAGTCGTGGGGGTCTGAGACCATGAGCATGAGCATGCACATGGCATACATGCATCATGAGGTCGTCAGAAAGAAGAGAAGCGGGCTTAATTACGCGTCAATATGTGGAAGGTCAGCTCATAAAGTTTCCCACGAGGACATGGCCACAAACATGATCAGTAGAAGAAAACGCATTCCTCATAGATCTCCGTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

293

Amino Acids

33.28

Weight (kDa)

7.88

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 95 - 166 1.3e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 776
AccIII TCCGGA 1 cut(s) 425
AciI CCGC 2 cut(s) 20, 762
AclI AACGTT 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 822
AcsI RAATTY 3 cut(s) 111, 279, 512
AcuI CTGAAG 2 cut(s) 55, 308
AdeI CACNNNGTG 1 cut(s) 444
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 7 cut(s) 35, 278, 418, 461, 517, 541, 560
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AleI CACNNNNGTG 1 cut(s) 644
AluBI AGCT 5 cut(s) 28, 67, 331, 669, 797
AluI AGCT 5 cut(s) 28, 67, 331, 669, 797
Alw21I GWGCWC 2 cut(s) 69, 671
Alw26I GTCTC 2 cut(s) 594, 692
Aor13HI TCCGGA 1 cut(s) 425
AoxI GGCC 1 cut(s) 822
ApeKI GCWGC 3 cut(s) 25, 88, 210
ApoI RAATTY 3 cut(s) 111, 279, 512
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
Asp700I GAANNNNTTC 2 cut(s) 155, 321
AspS9I GGNCC 1 cut(s) 649
AvaII GGWCC 1 cut(s) 649
BalI TGGCCA 1 cut(s) 824
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 69, 671
BauI CACGAG 1 cut(s) 812
BbsI GAAGAC 2 cut(s) 239, 449
Bbv12I GWGCWC 2 cut(s) 69, 671
BbvI GCAGC 3 cut(s) 37, 100, 197
BccI CCATC 2 cut(s) 264, 371
BceAI ACGGC 1 cut(s) 270
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 594, 692
BglII AGATCT 2 cut(s) 319, 863
BisI GCNGC 3 cut(s) 26, 89, 211
BlsI GCNGC 3 cut(s) 27, 90, 212
Bme18I GGWCC 1 cut(s) 649
BmgT120I GGNCC 1 cut(s) 649
BmiI GGNNCC 3 cut(s) 43, 272, 424
BmsI GCATC 3 cut(s) 124, 234, 742
BpiI GAAGAC 2 cut(s) 239, 449
Bsa29I ATCGAT 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 2 cut(s) 45, 76
BsaWI WCCGGW 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 475
BseAI TCCGGA 1 cut(s) 425
BseCI ATCGAT 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 45, 76
BseGI GGATG 2 cut(s) 139, 387
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 2 cut(s) 554, 687
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 3 cut(s) 37, 100, 197
BsgI GTGCAG 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 776
BshFI GGCC 1 cut(s) 824
BshNI GGYRCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 69, 671
BsiSI CCGG 2 cut(s) 162, 426
BsmAI GTCTC 2 cut(s) 594, 692
BsmBI CGTCTC 1 cut(s) 594
BsmI GAATGC 1 cut(s) 852
BsnI GGCC 1 cut(s) 824
Bso31I GGTCTC 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 69, 671
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 4 cut(s) 319, 619, 834, 863
BspACI CCGC 2 cut(s) 20, 762
BspANI GGCC 1 cut(s) 824
BspCNI CTCAG 2 cut(s) 555, 688
BspDI ATCGAT 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 425
BspFNI CGCG 1 cut(s) 776
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 43, 272, 424
BspQI GCTCTTC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 475
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 45, 76
BssMI GATC 4 cut(s) 319, 619, 834, 863
BssSI CACGAG 1 cut(s) 812
BssT1I CCWWGG 2 cut(s) 45, 76
Bst2BI CACGAG 1 cut(s) 812
Bst6I CTCTTC 2 cut(s) 74, 749
BstC8I GCNNGC 4 cut(s) 123, 163, 716, 764
BstDEI CTNAG 3 cut(s) 563, 577, 696
BstF5I GGATG 2 cut(s) 139, 387
BstFNI CGCG 1 cut(s) 776
BstKTI GATC 4 cut(s) 322, 622, 837, 866
BstMAI GTCTC 2 cut(s) 594, 692
BstMBI GATC 4 cut(s) 319, 619, 834, 863
BstNSI RCATGY 3 cut(s) 549, 718, 733
BstUI CGCG 1 cut(s) 776
BstV1I GCAGC 3 cut(s) 37, 100, 197
BstV2I GAAGAC 2 cut(s) 239, 449
BstX2I RGATCY 2 cut(s) 319, 863
BstXI CCANNNNNNTGG 1 cut(s) 646
BstYI RGATCY 2 cut(s) 319, 863
Bsu15I ATCGAT 1 cut(s) 259
BsuRI GGCC 1 cut(s) 824
BsuTUI ATCGAT 1 cut(s) 259
BtsCI GGATG 2 cut(s) 139, 387
Cac8I GCNNGC 4 cut(s) 123, 163, 716, 764
CciI TCATGA 1 cut(s) 736
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 649
ClaI ATCGAT 1 cut(s) 259
CseI GACGC 1 cut(s) 765
DdeI CTNAG 3 cut(s) 563, 577, 696
DpnI GATC 4 cut(s) 321, 621, 836, 865
DpnII GATC 4 cut(s) 319, 619, 834, 863
DraIII CACNNNGTG 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 822
Eam1104I CTCTTC 2 cut(s) 74, 749
EarI CTCTTC 2 cut(s) 74, 749
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 2 cut(s) 67, 669
Eco130I CCWWGG 2 cut(s) 45, 76
Eco24I GRGCYC 2 cut(s) 69, 671
Eco31I GGTCTC 1 cut(s) 692
Eco47I GGWCC 1 cut(s) 649
Eco53kI GAGCTC 2 cut(s) 67, 669
Eco57I CTGAAG 2 cut(s) 55, 308
EcoICRI GAGCTC 2 cut(s) 67, 669
EcoRI GAATTC 1 cut(s) 111
EcoT14I CCWWGG 2 cut(s) 45, 76
EcoT22I ATGCAT 1 cut(s) 735
EcoT38I GRGCYC 2 cut(s) 69, 671
ErhI CCWWGG 2 cut(s) 45, 76
Esp3I CGTCTC 1 cut(s) 594
FauI CCCGC 1 cut(s) 755
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 3 cut(s) 26, 89, 211
FokI GGATG 2 cut(s) 146, 374
FriOI GRGCYC 2 cut(s) 69, 671
Fsp4HI GCNGC 3 cut(s) 26, 89, 211
GluI GCNGC 3 cut(s) 26, 89, 211
HaeIII GGCC 1 cut(s) 824
HapII CCGG 2 cut(s) 162, 426
HgaI GACGC 1 cut(s) 765
HinfI GANTC 3 cut(s) 261, 565, 683
HpaII CCGG 2 cut(s) 162, 426
Hpy166II GTNNAC 2 cut(s) 295, 649
Hpy188I TCNGA 8 cut(s) 117, 311, 327, 592, 624, 682, 697, 749
Hpy188III TCNNGA 7 cut(s) 35, 391, 426, 461, 517, 569, 737
Hpy8I GTNNAC 2 cut(s) 295, 649
HpyAV CCTTC 5 cut(s) 32, 41, 284, 566, 783
HpyCH4IV ACGT 4 cut(s) 204, 291, 303, 348
HpyCH4V TGCA 7 cut(s) 125, 225, 438, 492, 549, 718, 733
HpyF3I CTNAG 3 cut(s) 563, 577, 696
HpySE526I ACGT 4 cut(s) 204, 291, 303, 348
Kpn2I TCCGGA 1 cut(s) 425
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 4 cut(s) 319, 619, 834, 863
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 4 cut(s) 22, 33, 276, 347
LpnPI CCDG 8 cut(s) 135, 175, 253, 338, 404, 439, 582, 628
Lsp1109I GCAGC 3 cut(s) 37, 100, 197
LweI GCATC 3 cut(s) 124, 234, 742
MaeII ACGT 4 cut(s) 204, 291, 303, 348
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 321, 621, 836, 865
MboI GATC 4 cut(s) 319, 619, 834, 863
MboII GAAGA 8 cut(s) 61, 148, 239, 314, 329, 449, 766, 855
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 2 cut(s) 319, 863
MhlI GDGCHC 2 cut(s) 69, 671
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 8 cut(s) 59, 111, 279, 413, 512, 634, 642, 769
MluI ACGCGT 1 cut(s) 774
MluNI TGGCCA 1 cut(s) 824
MlyI GAGTC 2 cut(s) 574, 692
MmeI TCCRAC 3 cut(s) 111, 369, 615
MnlI CCTC 8 cut(s) 262, 411, 536, 598, 662, 733, 808, 867
Mox20I TGGCCA 1 cut(s) 824
Mph1103I ATGCAT 1 cut(s) 735
MroI TCCGGA 1 cut(s) 425
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 2 cut(s) 155, 321
MscI TGGCCA 1 cut(s) 824
MseI TTAA 2 cut(s) 510, 768
MslI CAYNNNNRTG 5 cut(s) 644, 707, 713, 719, 830
Msp20I TGGCCA 1 cut(s) 824
MspI CCGG 2 cut(s) 162, 426
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 852
MvnI CGCG 1 cut(s) 776
NaeI GCCGGC 1 cut(s) 163
NdeII GATC 4 cut(s) 319, 619, 834, 863
NgoMIV GCCGGC 1 cut(s) 161
NlaIV GGNNCC 3 cut(s) 43, 272, 424
NsiI ATGCAT 1 cut(s) 735
NspI RCATGY 3 cut(s) 549, 718, 733
OliI CACNNNNGTG 1 cut(s) 644
PaeI GCATGC 1 cut(s) 718
PagI TCATGA 1 cut(s) 736
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 852
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 155, 321
PfeI GAWTC 1 cut(s) 261
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 27, 90, 212
PleI GAGTC 2 cut(s) 573, 691
PpsI GAGTC 2 cut(s) 573, 691
Psp124BI GAGCTC 2 cut(s) 69, 671
Psp1406I AACGTT 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 43, 272, 424
PspPI GGNCC 1 cut(s) 649
PsuI RGATCY 2 cut(s) 319, 863
PsyI GACNNNGTC 1 cut(s) 305
RseI CAYNNNNRTG 5 cut(s) 644, 707, 713, 719, 830
SacI GAGCTC 2 cut(s) 69, 671
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 510, 768
SatI GCNGC 3 cut(s) 26, 89, 211
Sau3AI GATC 4 cut(s) 319, 619, 834, 863
Sau96I GGNCC 1 cut(s) 649
SchI GAGTC 2 cut(s) 574, 692
SduI GDGCHC 2 cut(s) 69, 671
SfaNI GCATC 3 cut(s) 124, 234, 742
SinI GGWCC 1 cut(s) 649
SmiMI CAYNNNNRTG 5 cut(s) 644, 707, 713, 719, 830
SphI GCATGC 1 cut(s) 718
Sse9I AATT 8 cut(s) 59, 111, 279, 413, 512, 634, 642, 769
SsiI CCGC 2 cut(s) 20, 762
SstI GAGCTC 2 cut(s) 69, 671
StyI CCWWGG 2 cut(s) 45, 76
TaiI ACGT 4 cut(s) 207, 294, 306, 351
TaqI TCGA 3 cut(s) 259, 336, 654
TasI AATT 8 cut(s) 59, 111, 279, 413, 512, 634, 642, 769
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 2 cut(s) 510, 768
Tru9I TTAA 2 cut(s) 510, 768
TseI GCWGC 3 cut(s) 25, 88, 210
TspDTI ATGAA 2 cut(s) 159, 376
TspGWI ACGGA 1 cut(s) 858
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 649
XapI RAATTY 3 cut(s) 111, 279, 512
XceI RCATGY 3 cut(s) 549, 718, 733
XmnI GAANNNNTTC 2 cut(s) 155, 321
Zsp2I ATGCAT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.