MD15G1161500.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014522
Physical Location & Seq
Forward (+)
12146094 .. 12147778
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1161500.v1.1.491

Sequence Viewer

Length: 768 bp
ATGGGAATTCAGAAGCCTGCATGGTTGGAAGCCCTCTACACTGAGAAGTTCTTCGCCGGCTGCTCATTCCACGAAACTGCGAAAAAGAACGAAAAAAACATCTGCTGTTTGGATTGTTGCATCAGCATATGCCCCCATTGTCTTCCCTCCCATCGATTCCACAGGCTCCTTCAAATTCGCCGCTATGTCTACCATGACGTTGTCCGATTGGAAGATCTTCAGAAGCTCATCGACTGCTCCAACGTTCAGGCATATACAATCAATAGTGCCAAAGTAGTGTTCATCAAGAAAAGACCTCAAAATCGGCAATTCAAGGGTTCCGGAAACTACTGCACATCGTGTGACAGAAGTCTTCAAGAGCCTTATATCCATTGCTCTCTCGGGTGCAAGGTGGATTACGTGCTTAAATTCAAGAAAGACCTCTCTCCTTACTTGAAAACATGCAAGTCCCTTCAACTGAGTCCTGACTTCTTAGTTCCACTTTCCGATATGGGAGACGAGGAGATAACCAGTGATCAGACCAACCCTCATTCCACAATTGTGGACCTCGATGACCCGATGAGCTCGTCATCATCATCTGGGTCTGAGACCATGAGCATGACCATGCACATGGCGTACATGCATCATGATGTCGTCAGGAAAAAGAGAAGCGGGCTTAATTACGCGTCGTTATGTGGAAGATCGGCTCATAAAGTTTCCGACGAGGACATGGCCACAAGCATGATTAGTAGAAGAAAACGCATTCCTCATAGATCTCCTTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

256

Amino Acids

29.1

Weight (kDa)

8.75

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 131 8.4e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 665
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 2 cut(s) 181, 651
AclI AACGTT 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 3 cut(s) 6, 174, 407
AcuI CTGAAG 1 cut(s) 203
AdeI CACNNNGTG 1 cut(s) 339
AfaI GTAC 1 cut(s) 617
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 6 cut(s) 173, 313, 356, 412, 436, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 2 cut(s) 226, 564
AluI AGCT 2 cut(s) 226, 564
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 2 cut(s) 489, 581
Ama87I CYCGRG 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 320
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 3 cut(s) 6, 174, 407
Asp700I GAANNNNTTC 2 cut(s) 50, 216
AspS9I GGNCC 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 713
BanII GRGCYC 1 cut(s) 566
BbsI GAAGAC 2 cut(s) 134, 344
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 159
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 2 cut(s) 489, 581
BglII AGATCT 2 cut(s) 214, 752
BisI GCNGC 2 cut(s) 61, 181
BlsI GCNGC 2 cut(s) 62, 182
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 167, 319
BmsI GCATC 2 cut(s) 129, 631
BoxI GACNNNNGTC 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 134, 344
Bsa29I ATCGAT 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 581
BsaWI WCCGGW 1 cut(s) 320
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 154
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 33, 449, 576
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 2 cut(s) 57, 321
BslFI GGGAC 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 489, 581
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 1 cut(s) 713
Bso31I GGTCTC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 566
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 4 cut(s) 214, 514, 680, 752
BspACI CCGC 2 cut(s) 181, 651
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 3 cut(s) 34, 450, 577
BspDI ATCGAT 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 320
BspFNI CGCG 1 cut(s) 665
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 167, 319
BspTNI GGTCTC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 4 cut(s) 214, 514, 680, 752
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 18, 58, 653
BstDEI CTNAG 4 cut(s) 42, 458, 472, 585
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 4 cut(s) 217, 517, 683, 755
BstMAI GTCTC 2 cut(s) 489, 581
BstMBI GATC 4 cut(s) 214, 514, 680, 752
BstNSI RCATGY 2 cut(s) 444, 622
BstPAI GACNNNNGTC 1 cut(s) 348
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 2 cut(s) 134, 344
BstX2I RGATCY 2 cut(s) 214, 752
BstXI CCANNNNNNTGG 2 cut(s) 541, 610
BstYI RGATCY 2 cut(s) 214, 752
Bsu15I ATCGAT 1 cut(s) 154
BsuRI GGCC 1 cut(s) 713
BsuTUI ATCGAT 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 39, 517
Cac8I GCNNGC 3 cut(s) 18, 58, 653
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 154
CseI GACGC 1 cut(s) 654
Csp6I GTAC 1 cut(s) 616
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 4 cut(s) 42, 458, 472, 585
DpnI GATC 4 cut(s) 216, 516, 682, 754
DpnII GATC 4 cut(s) 214, 514, 680, 752
DraIII CACNNNGTG 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 581
Eco47I GGWCC 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 564
EcoRI GAATTC 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 624
EcoT38I GRGCYC 1 cut(s) 566
Esp3I CGTCTC 1 cut(s) 489
FaqI GGGAC 1 cut(s) 433
FauI CCCGC 1 cut(s) 644
FauNDI CATATG 1 cut(s) 128
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 61, 181
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 2 cut(s) 61, 181
GluI GCNGC 2 cut(s) 61, 181
HaeIII GGCC 1 cut(s) 713
HapII CCGG 2 cut(s) 57, 321
HgaI GACGC 1 cut(s) 654
HinfI GANTC 2 cut(s) 156, 460
HpaII CCGG 2 cut(s) 57, 321
Hpy166II GTNNAC 2 cut(s) 190, 544
Hpy188I TCNGA 7 cut(s) 12, 206, 222, 487, 519, 586, 700
Hpy188III TCNNGA 7 cut(s) 286, 321, 356, 412, 464, 626, 637
Hpy8I GTNNAC 2 cut(s) 190, 544
Hpy99I CGWCG 2 cut(s) 670, 704
HpyAV CCTTC 2 cut(s) 179, 461
HpyCH4IV ACGT 3 cut(s) 198, 243, 399
HpyCH4V TGCA 7 cut(s) 20, 120, 333, 387, 444, 607, 622
HpyF3I CTNAG 4 cut(s) 42, 458, 472, 585
HpySE526I ACGT 3 cut(s) 198, 243, 399
Kpn2I TCCGGA 1 cut(s) 320
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 214, 514, 680, 752
LmnI GCTCC 2 cut(s) 171, 242
LpnPI CCDG 9 cut(s) 30, 70, 148, 233, 334, 477, 523, 564, 622
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 129, 631
MaeII ACGT 3 cut(s) 198, 243, 399
MaeIII GTNAC 1 cut(s) 341
MalI GATC 4 cut(s) 216, 516, 682, 754
MboI GATC 4 cut(s) 214, 514, 680, 752
MboII GAAGA 7 cut(s) 43, 134, 209, 224, 344, 690, 744
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 214, 752
MhlI GDGCHC 1 cut(s) 566
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 6 cut(s) 6, 174, 308, 407, 537, 658
MluI ACGCGT 1 cut(s) 663
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 3 cut(s) 6, 264, 723
MnlI CCTC 9 cut(s) 44, 157, 306, 431, 493, 537, 557, 697, 756
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 1 cut(s) 624
MroI TCCGGA 1 cut(s) 320
MroNI GCCGGC 1 cut(s) 56
MroXI GAANNNNTTC 2 cut(s) 50, 216
MscI TGGCCA 1 cut(s) 713
MseI TTAA 2 cut(s) 405, 657
MslI CAYNNNNRTG 6 cut(s) 539, 596, 602, 608, 627, 719
Msp20I TGGCCA 1 cut(s) 713
MspI CCGG 2 cut(s) 57, 321
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 741
MvnI CGCG 1 cut(s) 665
NaeI GCCGGC 1 cut(s) 58
NdeI CATATG 1 cut(s) 128
NdeII GATC 4 cut(s) 214, 514, 680, 752
NgoMIV GCCGGC 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 167, 319
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 624
NspI RCATGY 2 cut(s) 444, 622
OliI CACNNNNGTG 1 cut(s) 539
PagI TCATGA 1 cut(s) 625
PctI GAATGC 1 cut(s) 741
PdiI GCCGGC 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 50, 216
PfeI GAWTC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 62, 182
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
Ppu21I YACGTR 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 566
Psp1406I AACGTT 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 167, 319
PspPI GGNCC 1 cut(s) 544
PsuI RGATCY 2 cut(s) 214, 752
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 6 cut(s) 539, 596, 602, 608, 627, 719
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 2 cut(s) 405, 657
SatI GCNGC 2 cut(s) 61, 181
Sau3AI GATC 4 cut(s) 214, 514, 680, 752
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 469
SduI GDGCHC 1 cut(s) 566
SetI ASST 9 cut(s) 201, 228, 246, 298, 393, 402, 423, 549, 566
SfaNI GCATC 2 cut(s) 129, 631
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 6 cut(s) 539, 596, 602, 608, 627, 719
Sse9I AATT 6 cut(s) 6, 174, 308, 407, 537, 658
SsiI CCGC 2 cut(s) 181, 651
SstI GAGCTC 1 cut(s) 566
TaiI ACGT 3 cut(s) 201, 246, 402
TaqI TCGA 3 cut(s) 154, 231, 549
TasI AATT 6 cut(s) 6, 174, 308, 407, 537, 658
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 405, 657
Tru9I TTAA 2 cut(s) 405, 657
TscAI CASTG 2 cut(s) 46, 517
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 271
TspRI CASTG 2 cut(s) 46, 517
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 3 cut(s) 6, 174, 407
XceI RCATGY 2 cut(s) 444, 622
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 2 cut(s) 50, 216
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.