Rorug01G0470600

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014522
Physical Location & Seq
Forward (+)
56198855 .. 56201276
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0470600.1

Sequence Viewer

Length: 897 bp
ATGGACACAGCTCACTGGCCACAGGGGATTGGAGTGGTTAAATCCATGGGAGTTGAAGTTTCTGATTCAAGGCCCATCTTAGAGAGAAGAGGAAGACCTCAGAAGGATCAAGCTTTGAATTGTCCAAGGTGCAACTCAACAACCACTAAATTCTGTTACTATAACAATTACAGTCTCTCTCAGCCAAGGTACTTCTGTAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGGAAGAATAACAAGAGATCTTCAACTTCATCATCTTCGTCACCATCAACTTCCAATTCATCTAAGAAGCTTGCTCATCATGATCTGGTGATGACCCAACAAAGTGCTGATTCTCAAAACCCTAAGATCCATCAAGGTCAAGATCTCAACCTAGCATACCCACCAACATCTGATCAGGACTATGATCATCATAGCATCTTTAATCCTAGCTCTTCTAGAATTAGTACTTCATCCCCTCATAATCTCTCGGCTATGGAGCTCCTCAAGAGTACTGGGATCAATGCATCAAGGGGATTAATGAACTCTTTCATGGCTCCCATATCTGTAGCAGATTCGAATACTATCACGATGTTCTCTACTGGTAATCATGGGTATCCAAATTTGCAAGAATTTAAGCCAAGGCTCAGTTTTTCTCTTGATGGGTATGAGAGTGGCTATGGAAGTCTTCAAGGCGTTCAAGATGGTACAAGTCATCATCATGCAAGGCTCTTGTTTCCTACTGATCAGGATTTGAAGCAGATTCCAAGCAGTACTACTAATACTACTACAAGCACTGAATTTGAGCAAAATGGAGGGGAAGGAGATCATTCTGGTGTGTATTGGAATGGAATGTTAGGTGGAGGATCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

298

Amino Acids

32.7

Weight (kDa)

8.54

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 36 - 93 6.9e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12646 AT2G12646 AT2G12646
fragaria_vesca FvH4_1g01900
malus_domestica MD02G1017000.v1.1 MD15G1161500.v1.1
prunus_persica Prupe.7G256600_v2.0.a1
pyrus_communis pycom02g01530
rosa_chinensis RchiOBHm_Chr2g0086911
rosa_laevigata RLG00000015815
rosa_roxburghii Rroxscaffold_2G00154030
rosa_rugosa Rorug01G0470600
rosa_samantha Rh2AG023400 Rh2BG024100 Rh2CG024300 Rh2DG024200
rosa_wichuraiana Rw2G001850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 254
AclWI GGATC 4 cut(s) 114, 385, 548, 895
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 4 cut(s) 149, 643, 653, 821
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 5 cut(s) 191, 490, 535, 730, 796
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 7 cut(s) 56, 69, 118, 288, 713, 722, 778
AluBI AGCT 5 cut(s) 11, 113, 334, 474, 523
AluI AGCT 5 cut(s) 11, 113, 334, 474, 523
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 4 cut(s) 114, 385, 548, 895
AoxI GGCC 2 cut(s) 17, 71
ApoI RAATTY 4 cut(s) 149, 643, 653, 821
AseI ATTAAT 1 cut(s) 560
Asp700I GAANNNNTTC 1 cut(s) 569
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 297, 364
AsuII TTCGAA 1 cut(s) 599
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BalI TGGCCA 1 cut(s) 19
BanII GRGCYC 1 cut(s) 525
BbsI GAAGAC 2 cut(s) 100, 701
Bbv12I GWGCWC 1 cut(s) 525
BccI CCATC 5 cut(s) 83, 316, 402, 677, 719
BciVI GTATCC 1 cut(s) 648
BclI TGATCA 3 cut(s) 436, 448, 766
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 3 cut(s) 416, 471, 480
BfmI CTRYAG 1 cut(s) 588
BfuI GTATCC 1 cut(s) 648
BglII AGATCT 2 cut(s) 281, 406
BmcAI AGTACT 3 cut(s) 490, 535, 796
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 2 cut(s) 468, 557
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 2 cut(s) 100, 701
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 2 cut(s) 247, 512
BsaJI CCNNGG 4 cut(s) 45, 125, 185, 662
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 4 cut(s) 20, 248, 541, 628
BseDI CCNNGG 4 cut(s) 45, 125, 185, 662
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 3 cut(s) 113, 194, 682
BseNI ACTGG 4 cut(s) 20, 248, 541, 628
BseRI GAGGAG 1 cut(s) 515
BshFI GGCC 2 cut(s) 19, 73
BsiHKAI GWGCWC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 2 cut(s) 19, 73
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 525
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 2 cut(s) 19, 73
BspCNI CTCAG 3 cut(s) 112, 193, 681
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 4 cut(s) 114, 385, 548, 895
BspQI GCTCTTC 1 cut(s) 481
BspT104I TTCGAA 1 cut(s) 599
BsrI ACTGG 4 cut(s) 20, 248, 541, 628
BssECI CCNNGG 4 cut(s) 45, 125, 185, 662
BssT1I CCWWGG 4 cut(s) 45, 125, 185, 662
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 2 cut(s) 82, 481
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 6 cut(s) 79, 99, 180, 327, 387, 668
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 494
BstMAI GTCTC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 588
BstV2I GAAGAC 2 cut(s) 100, 701
BstX2I RGATCY 3 cut(s) 281, 390, 406
BstYI RGATCY 3 cut(s) 281, 390, 406
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 2 cut(s) 19, 73
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 3 cut(s) 13, 255, 816
Cac8I GCNNGC 1 cut(s) 336
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 5 cut(s) 190, 489, 534, 729, 795
CviAII CATG 6 cut(s) 46, 344, 574, 632, 743, 891
CviQI GTAC 5 cut(s) 190, 489, 534, 729, 795
DdeI CTNAG 6 cut(s) 79, 99, 180, 327, 387, 668
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 2 cut(s) 82, 481
EarI CTCTTC 2 cut(s) 82, 481
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 4 cut(s) 45, 125, 185, 662
Eco24I GRGCYC 1 cut(s) 525
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 523
EcoT14I CCWWGG 4 cut(s) 45, 125, 185, 662
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 4 cut(s) 45, 125, 185, 662
FaeI CATG 6 cut(s) 49, 347, 577, 635, 746, 894
FatI CATG 6 cut(s) 45, 343, 573, 631, 742, 890
FbaI TGATCA 3 cut(s) 436, 448, 766
FokI GGATG 1 cut(s) 481
FriOI GRGCYC 1 cut(s) 525
FspBI CTAG 3 cut(s) 416, 471, 480
HaeIII GGCC 2 cut(s) 19, 73
Hin1II CATG 6 cut(s) 49, 347, 577, 635, 746, 894
HindIII AAGCTT 2 cut(s) 111, 332
HinfI GANTC 4 cut(s) 65, 374, 596, 784
HphI GGTGA 2 cut(s) 297, 364
Hpy188I TCNGA 3 cut(s) 64, 102, 436
Hpy188III TCNNGA 9 cut(s) 344, 404, 440, 480, 529, 610, 680, 722, 770
HpyAV CCTTC 4 cut(s) 97, 204, 218, 836
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 132, 548, 649, 746
HpyF3I CTNAG 6 cut(s) 79, 99, 180, 327, 387, 668
Hsp92II CATG 6 cut(s) 49, 347, 577, 635, 746, 894
Ksp22I TGATCA 3 cut(s) 436, 448, 766
LguI GCTCTTC 1 cut(s) 481
LmnI GCTCC 3 cut(s) 520, 528, 583
LpnPI CCDG 8 cut(s) 8, 261, 335, 425, 522, 609, 755, 840
LweI GCATC 2 cut(s) 468, 557
MaeI CTAG 3 cut(s) 416, 471, 480
MaeIII GTNAC 2 cut(s) 155, 303
MboII GAAGA 7 cut(s) 99, 105, 276, 280, 291, 468, 701
MflI RGATCY 3 cut(s) 281, 390, 406
MhlI GDGCHC 1 cut(s) 525
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 8 cut(s) 118, 149, 166, 319, 483, 643, 653, 821
MluNI TGGCCA 1 cut(s) 19
MnlI CCTC 7 cut(s) 83, 108, 251, 510, 536, 830, 878
Mox20I TGGCCA 1 cut(s) 19
Mph1103I ATGCAT 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 569
MscI TGGCCA 1 cut(s) 19
MseI TTAA 4 cut(s) 39, 465, 560, 657
MslI CAYNNNNRTG 2 cut(s) 741, 855
Msp20I TGGCCA 1 cut(s) 19
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 6 cut(s) 49, 347, 577, 635, 746, 894
NlaIV GGNNCC 1 cut(s) 579
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 303
NsiI ATGCAT 1 cut(s) 550
NspV TTCGAA 1 cut(s) 599
PagI TCATGA 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 4 cut(s) 65, 374, 596, 784
PflMI CCANNNNNTGG 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 525
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 3 cut(s) 281, 390, 406
RsaI GTAC 5 cut(s) 191, 490, 535, 730, 796
RsaNI GTAC 5 cut(s) 190, 489, 534, 729, 795
RseI CAYNNNNRTG 2 cut(s) 741, 855
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 481
SaqAI TTAA 4 cut(s) 39, 465, 560, 657
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 3 cut(s) 490, 535, 796
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 2 cut(s) 468, 557
SfcI CTRYAG 1 cut(s) 588
SfuI TTCGAA 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 741, 855
SmlI CTYRAG 2 cut(s) 262, 527
SmoI CTYRAG 2 cut(s) 262, 527
Sse9I AATT 8 cut(s) 118, 149, 166, 319, 483, 643, 653, 821
SspMI CTAG 3 cut(s) 416, 471, 480
SstI GAGCTC 1 cut(s) 525
StyI CCWWGG 4 cut(s) 45, 125, 185, 662
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 599
TasI AATT 8 cut(s) 118, 149, 166, 319, 483, 643, 653, 821
TatI WGTACW 3 cut(s) 488, 533, 794
TfiI GAWTC 4 cut(s) 65, 374, 596, 784
Tru1I TTAA 4 cut(s) 39, 465, 560, 657
Tru9I TTAA 4 cut(s) 39, 465, 560, 657
TscAI CASTG 3 cut(s) 20, 255, 823
TseFI GTSAC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 5 cut(s) 282, 312, 483, 562, 578
TspRI CASTG 3 cut(s) 20, 255, 823
Van91I CCANNNNNTGG 1 cut(s) 254
VspI ATTAAT 1 cut(s) 560
XapI RAATTY 4 cut(s) 149, 643, 653, 821
XbaI TCTAGA 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 3 cut(s) 416, 471, 480
ZrmI AGTACT 3 cut(s) 490, 535, 796
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.